Basic Information | |
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Family ID | F092296 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 44 residues |
Representative Sequence | VLEKLQGYGYAAEGSTPERLLEINRDDLALWRKLVREAGIPLE |
Number of Associated Samples | 94 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 6.54 % |
% of genes near scaffold ends (potentially truncated) | 90.65 % |
% of genes from short scaffolds (< 2000 bps) | 97.20 % |
Associated GOLD sequencing projects | 89 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.45 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (96.262 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.953 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.514 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (37.383 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 39.44% β-sheet: 0.00% Coil/Unstructured: 60.56% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.45 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Sediment Freshwater Wetlands River Water Soil Groundwater Sediment Watersheds Groundwater Sediment Soil Soil Vadose Zone Soil Terrestrial Soil Grasslands Soil Terrestrial Switchgrass Rhizosphere Agricultural Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Sediment Avena Fatua Rhizosphere Miscanthus Rhizosphere Corn, Switchgrass And Miscanthus Rhizosphere Populus Rhizosphere Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
SwBSRL2_0015.00003320 | 2162886013 | Switchgrass Rhizosphere | GYGYSPEGSTPERLTEINRDDLALWRRLVREANIPLE |
C688J14111_100312981 | 3300001305 | Soil | AALKRPEVLEKLQSYGYAAEGSTAERLFEINRDDLALWKKLVAEAGIALE* |
JGI25613J43889_100720583 | 3300002907 | Grasslands Soil | VTAVVKRPDVVAKLQSYGYAAESSTPERMWEINRDDLVLWKKLIAEANLALE* |
Ga0066673_103777972 | 3300005175 | Soil | KLQSYGYAAEGSTPERLLEINRDDLALWRKLVREANIPLE* |
Ga0066673_104664911 | 3300005175 | Soil | VNAALKRPDVLEQLQRYGYAAEGSTPEGLTAINRDDLALWRRLVREAGIALE* |
Ga0066671_100879881 | 3300005184 | Soil | VRRPEVVEKMQSYGYAAEGSTPERLFEINRDDLALWRKLIAEARLELD* |
Ga0066671_107506821 | 3300005184 | Soil | PEVIERMQSYGYAAEGSTPERLLEINRDDLALWRKLITDAGLELD* |
Ga0066676_110589061 | 3300005186 | Soil | KRPDVLEQLQRYGYAAEGSTPEGLTAINRDDLALWRRLVREAGIPLE* |
Ga0066675_110960361 | 3300005187 | Soil | VKRPEVIERMQSYGYAAEGSTPERLLEINRDDLALWRKLITDAGLELD* |
Ga0070689_1005718121 | 3300005340 | Switchgrass Rhizosphere | AALKRPDVIEKLLSYGYSPEGSTPERLTEINRDDLALWRRLVREANIPLE* |
Ga0070668_1015228662 | 3300005347 | Switchgrass Rhizosphere | AKLQSYGYSPEGSTPERLLELNRADLELWRRLVKEAGIPLE* |
Ga0068867_1008715441 | 3300005459 | Miscanthus Rhizosphere | DVLEKLQSYGYAAEGSTPERLLEINRADLELWRKLVKEAGIPLE* |
Ga0070685_106477152 | 3300005466 | Switchgrass Rhizosphere | PEMVEKLQSYGYAPEGSTPERLFEINRDDLALWKKLVQQAKLPLE* |
Ga0070679_1018110901 | 3300005530 | Corn Rhizosphere | QRPDVIAKLQSYGYSPEGSTPERLLELNRADLDLWRRLVKEAGIPLE* |
Ga0070695_1005497173 | 3300005545 | Corn, Switchgrass And Miscanthus Rhizosphere | EKLLGYGYSPEGSTPERLTEINRDDLALWRRLVREASIPLE* |
Ga0066696_105241193 | 3300006032 | Soil | SYGYAAEGSTPERLFEINRDDLALWRKLIADARIELD* |
Ga0075024_1008440261 | 3300006047 | Watersheds | PDVLEKLQSYGYAAEGSTPERLLDINREDLALWRRLVREAGIPLE* |
Ga0079037_1014722802 | 3300006224 | Freshwater Wetlands | VTALKRPEVLDKLLSYGYVVEGSTPEGLATINRDDLVLWRRLVKEAGIPVE* |
Ga0074060_120671612 | 3300006604 | Soil | NAALKRPEVLEKLQSYGYAAEGSTPERLFEINRDDLALWRKLVKQAAIPLE* |
Ga0074057_111620732 | 3300006605 | Soil | LGYGYSPEGSTPERLLEINRDDLALWRKLVKQAAIPLE* |
Ga0066660_103208562 | 3300006800 | Soil | AKLQSYGYAVEGSTPERLLEINRDDLALWRKLVREANIPLE* |
Ga0075420_1007812453 | 3300006853 | Populus Rhizosphere | RPDVIAKLQSYGYSPEGSTPERLLEVNRADLELWRRLVKEAGIPLE* |
Ga0075420_1010978612 | 3300006853 | Populus Rhizosphere | KLLSYGYAAEGSSPERLLEINRDDLALWRKLVGEARIPLE* |
Ga0079218_100322431 | 3300007004 | Agricultural Soil | KLQSYGYAAEGSTPERLLEINRADLELWRKLVKEAGIPLE* |
Ga0099793_103687582 | 3300007258 | Vadose Zone Soil | NAALKRPDVLEQLQRYGYAAEGSTPEGLTAINRADLALWRKLVAEAGIALE* |
Ga0099793_106661622 | 3300007258 | Vadose Zone Soil | PDVLEQLQRYGYAAEGSTPEGLTAINREDLALWRKLVAEAGIALE* |
Ga0105095_101243972 | 3300009053 | Freshwater Sediment | MDRLLKAALPRSDVLEKRQGYGYAAEGSTPERLAAIIRDDLALWRRLVHEAGIPLD* |
Ga0105098_105790502 | 3300009081 | Freshwater Sediment | VLEKLQGYGYAAEGSTPERLLEINRDDLALWRKLVREAGIPLE* |
Ga0105107_100750043 | 3300009087 | Freshwater Sediment | MDRLLKAALPRPDVLEKRQGYGYAAEGSTPERLAAIIRDDLALWRRLVHEAGIPLD* |
Ga0099830_102690771 | 3300009088 | Vadose Zone Soil | VLEQLQRYGYAAEGSTPEGLTAINREDLALWRRLVKEAGIPLE* |
Ga0099828_111780371 | 3300009089 | Vadose Zone Soil | QRYGYAAEGSTPEGLTAINREDLALWRKLVREAGIPLE* |
Ga0099827_114210961 | 3300009090 | Vadose Zone Soil | KRPDVLEQLQRYGYAAEGSTPEGLTAINREDLALWRRLVREAGIPLE* |
Ga0114129_113869062 | 3300009147 | Populus Rhizosphere | YATEGSTPERVLEINREDLALWRRLVKEAGIPLE* |
Ga0105101_100837763 | 3300009171 | Freshwater Sediment | AAILYSDAWKAAMDRLLKAALPRSDVLEKRQGYGYAAEGSTPERLAAIIRDDLALWRRLVHEAGIPLD* |
Ga0103856_100527213 | 3300009233 | River Water | KNFLSFGYAIEGSTPEELAAINRNDLVLWRRLVKEANVTLD* |
Ga0105340_10840541 | 3300009610 | Soil | NAALKRPDVLEKLQGYGYAAEGSTPERLLEINRDDLALWRKLVREAGIPLD* |
Ga0134127_126292291 | 3300010399 | Terrestrial Soil | RADVREKLLSYGYAAEGSTPERLLEINRDDLALWRKLVKEAGIPLE* |
Ga0134121_104879601 | 3300010401 | Terrestrial Soil | RPDVIERMQSYGYVAESSTPERLLEINRDDLALWRKLVADAGMALD* |
Ga0134121_125312971 | 3300010401 | Terrestrial Soil | GYGFAAEGSTPDGLAAINRDDLALWRRLVREANIPLE* |
Ga0134123_134302151 | 3300010403 | Terrestrial Soil | LLSYGYSPEGSTPERLLEINRDDLALWRRLVKEANIPLE* |
Ga0137356_11034531 | 3300011402 | Soil | LQGYGYAAEGSTPERLLEINRDDLALWRKLVNEAGIPLE* |
Ga0137462_10523851 | 3300011421 | Soil | GYSAEGSTPERLLEINRDDLALWRKLVKEAGIPLE* |
Ga0137423_11673121 | 3300011430 | Soil | YGYAAEGSTPERLLEINRDDLALWRKLVREAGIPLE* |
Ga0137423_12447541 | 3300011430 | Soil | VNAALKRPEVLEKMQSYGYAAEGSTAERLLEINRDDLALWRKLVNEAGIPLE* |
Ga0137426_12350301 | 3300011435 | Soil | PEVLEKLQGYGYAAEGSTPERLLEINRDDLALWRKLVNQAGIPLE* |
Ga0137431_12279762 | 3300012038 | Soil | EVNILLKRKDVLDKLQSYGYAAEGSTPERLLEINRADLELWRRLVKEAGIPLE* |
Ga0137389_110835161 | 3300012096 | Vadose Zone Soil | VLEQLQRYGYAAEGSTPEGLTAINREDLALWRKLVKEAGIPLE* |
Ga0137353_10798862 | 3300012157 | Soil | RRPDVLEKLQGYGYAAEGSTPERLAEINRDDLALWRRLVRAAGIPLE* |
Ga0137355_10855372 | 3300012163 | Soil | VLKRPEVLEKLQSYGYAAEGSTPERLLEINRADLALWRKLVKEAGIPLE* |
Ga0150985_1112312503 | 3300012212 | Avena Fatua Rhizosphere | QSYGYAAEGSTPERLFEINRDDLALWKKLVAEAGIALE* |
Ga0137397_113620512 | 3300012685 | Vadose Zone Soil | RPEVLEQLQRYGYAAEGSTPEGLTAINREDLALWRRLVREAGIALE* |
Ga0137419_112351172 | 3300012925 | Vadose Zone Soil | EQLQRYGYAAEGSTPEGLTAINRADLALWRKLVAEAGIALE* |
Ga0137419_113525431 | 3300012925 | Vadose Zone Soil | RADVREKLQSYGYAAEGSTPERLLEINRDDLALWRKLVREANIPLE* |
Ga0137416_115735441 | 3300012927 | Vadose Zone Soil | YAAEGSTPEGLTAINREDLALWRKLVREAGIALE* |
Ga0137416_116541961 | 3300012927 | Vadose Zone Soil | RMQSYGYTAEGSTPERLLEINRDDLALWRKLVADAGLALD* |
Ga0137416_116613762 | 3300012927 | Vadose Zone Soil | LQRYGYAAEGSTPEGLTAINREDLALWRKLVREAGIPLE* |
Ga0134077_100722122 | 3300012972 | Grasslands Soil | LKRPDVLEQLQRYGYAAEGSTPEGLTAINRDDLALWRRLVREAGIPLE* |
Ga0164304_105159852 | 3300012986 | Soil | VLEKLQSYGYAAEGSTPERLFEINRDDLALWQKLVKQAAIPLE* |
Ga0157378_106035441 | 3300013297 | Miscanthus Rhizosphere | KEVNAAVRRPDIAGQLLKYGYQPEGSPPDELLAINRDDLALWRKLVADAKIPLE* |
Ga0157378_123242471 | 3300013297 | Miscanthus Rhizosphere | TEVNGALKRADVLEKLLSNAYVAEGSTPEGLLAINRDDLALWRKLVKEAGIALD* |
Ga0120188_10531402 | 3300013760 | Terrestrial | DVLEKLQPYGYAAEGSTPERLAEINRTDLELWRRLVKEAGLPLD* |
Ga0157377_109345921 | 3300014745 | Miscanthus Rhizosphere | RPEVLEKLQSYGYAAEGSTPERLFEINRDDLALWRKLVAQAGIPLE* |
Ga0180095_10471302 | 3300014871 | Soil | QTYGYSPEGSTPQGLLEINREDLALWRRLIAEAKLPLE* |
Ga0137409_102298682 | 3300015245 | Vadose Zone Soil | NAALKRPEVLEQLQRYGYAAEGSTPEGLTAINREDLALWRKLVREAGIALE* |
Ga0137409_106760823 | 3300015245 | Vadose Zone Soil | KMQSYGYAAEGSTPGELYEINRADLALWRKLIADAGLELD* |
Ga0184628_100944131 | 3300018083 | Groundwater Sediment | GYSAEGSTPERLLEINRDDLALWRKLVKEAGIPLE |
Ga0190265_108558131 | 3300018422 | Soil | KLQSYGYAAEGSTPEGLLEINRVDLELWRKLVKEAGIPLE |
Ga0190272_120407392 | 3300018429 | Soil | VAEKLQSYGYSPEGSTPERLVEVNRADLELWRKLVKEAGIPLE |
Ga0190272_120912991 | 3300018429 | Soil | NAALKRPDVLEKLQGYGYAAEGSTPERLLEINRDDLALWRKLVREAAIPLE |
Ga0066667_108729402 | 3300018433 | Grasslands Soil | VNAALKRPDVLEQLQRYGYAAEGSTPEGLTAINRDDLALWRRLVREAGIPLE |
Ga0190274_137640091 | 3300018476 | Soil | LQGYGYAAEGSTPEGLLAINRDDLALWRRLVREANIPLE |
Ga0137408_11552045 | 3300019789 | Vadose Zone Soil | PLDFGFVKKGPTPEGLLAINRDDLALWRRLVNEAGIPLE |
Ga0222623_103457881 | 3300022694 | Groundwater Sediment | ALRRPEVLEKLQSYGYSAEGSTPERLLEINRDDLALWRKLVGEAGIPLE |
Ga0247686_10149181 | 3300024177 | Soil | ALKRPDVAEKLLGYGYSPEGSTPERLLEINRDDLALWRKLVKEANIPLE |
Ga0247664_10367393 | 3300024232 | Soil | GYAPEGSTPERLFEINRDDLALWKKLVQQAKLPLE |
Ga0207653_102381512 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | VLPDGKRDVIAKLQSYGYSPEGSTPERLLELNRADLDLWRRLVKEAGIPLE |
Ga0207653_102655401 | 3300025885 | Corn, Switchgrass And Miscanthus Rhizosphere | QVVEKMQSYGYAAESSTAAELYEINRADLELWRKLIADARLELD |
Ga0207688_108706781 | 3300025901 | Corn, Switchgrass And Miscanthus Rhizosphere | EKLQSYGYAPEGSTPERLFEINRDDLALWKKLVQQAKLPLE |
Ga0207684_109575292 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | KPRSYGYATEGSTPERLLEINRDDLALWRRLVKDAGIPLE |
Ga0207670_105588861 | 3300025936 | Switchgrass Rhizosphere | IEKLRSYGYATEGSTPERLLEINRNDLALWRRLVKDAGIPLE |
Ga0207711_102713771 | 3300025941 | Switchgrass Rhizosphere | KLQSYGYAAEGSTPERLFEINRDDLALWRKLVAQAGIPLE |
Ga0209438_12287311 | 3300026285 | Grasslands Soil | DVVAKLQSYGYAAESSTPERMWEINRDDLVLWKKLIAEANLALE |
Ga0209470_12731112 | 3300026324 | Soil | VLEQLQRYGYAAEGSTPEGLTAINREDLALWRRLVREAGIPLE |
Ga0209266_12643602 | 3300026327 | Soil | VLEQLQRYGYAAEGSTPEGLTAINRDDLALWRRLVREASIALE |
Ga0209267_12919291 | 3300026331 | Soil | SYGYAAEGSTPEGLAAINRDDLALWRRLVREAGIPLE |
Ga0209286_11405982 | 3300027713 | Freshwater Sediment | MDRLLKAALPRSDVLEKRQGYGYAAEGSTPERLAAIIRDDLALWRRLVHEAGIPLD |
Ga0209683_104208672 | 3300027840 | Wetland Sediment | FLGFGYAIEGSTPEELAAINRNDLVLWRKLVKEANVPLE |
Ga0209486_106640771 | 3300027886 | Agricultural Soil | LQSYGYAAEGSTPERLLEINRADLELWRKLVKEAGIPLE |
Ga0209069_109074801 | 3300027915 | Watersheds | PDVLEKLQSYGYAAEGSTPERLLDINREDLALWRRLVREAGIPLE |
Ga0137415_104986894 | 3300028536 | Vadose Zone Soil | QRYGYAAEGSTPEGLTAINRADLALWRKLVAEAGIALE |
Ga0247819_101379631 | 3300028608 | Soil | DVIAKLQSYGYSPEGSTPERLLELNRADLDLWRRLVKEAGIPLE |
Ga0307503_107548001 | 3300028802 | Soil | RPDVAEQMLKYGYQPEGSTPEGLLEINRADLALWRKLVADAKLPLE |
Ga0247825_113802102 | 3300028812 | Soil | QLLRYGYSPEASTPERLLEINREDLALWRKLIVEAKLPLE |
Ga0307498_103231522 | 3300031170 | Soil | YGYAAEGSTPERLLEINRDDLALWRKLVKEAGIPLE |
Ga0310887_101886401 | 3300031547 | Soil | YGYAAEGTTPERLFEINRDDLALWKKLVAQARIPLE |
Ga0307468_1012365082 | 3300031740 | Hardwood Forest Soil | AKLQSYGYAAESSTPERMWEINRDDLVLWRKLIADANLALE |
Ga0307411_109907783 | 3300032005 | Rhizosphere | VIEKLQSYGYSPEGSTPERLLEVNRADLELWRKLVKEAGIPLE |
Ga0310890_111034031 | 3300032075 | Soil | LLKKPDVIEKLQSYGYSPEGSTPERLLEVNRADLELWRRLVKEAGIPLE |
Ga0310895_103519541 | 3300032122 | Soil | DVIEKLQSYGYSPEGSTPERLLEVNRADLELWRRLVKEAGIPLE |
Ga0315912_102829653 | 3300032157 | Soil | QSSGYSPEGSTPERLSEINRDDLVLWRRLVKEAGIPLE |
Ga0307471_1012270433 | 3300032180 | Hardwood Forest Soil | KMQSYGYAAEASSPERLLEINRDDLALWRKLIAEAGIALD |
Ga0307472_1016184232 | 3300032205 | Hardwood Forest Soil | EVNAALKRPDVVEKLQSYGYAAEGSTSERLLEINREDLALWRRLVREAGIPLE |
Ga0335082_102587392 | 3300032782 | Soil | VSSSRSAAYAAEGSTPEALRAVNREDPALWRKLVKDSGIPLE |
Ga0335080_100034807 | 3300032828 | Soil | VSSSRSAAYAAEGSTPEALRAGNREDPALWRKLVKDSGIPLE |
Ga0335076_110086672 | 3300032955 | Soil | VSSSRPAAYAAEGSTPEALRAVNREDPALWRKLVKDSGIPLE |
Ga0364926_126934_413_538 | 3300033812 | Sediment | EKLQGYGYAAEGSTPERLLEINRADLELWRKLVKEAGIPLE |
Ga0314784_090965_3_134 | 3300034663 | Soil | VIEKLQTYGYAAEGSTPERLAEINRDDLALWKKLVAEARIPLE |
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