Basic Information | |
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Family ID | F092262 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 49 residues |
Representative Sequence | EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ |
Number of Associated Samples | 98 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.96 % |
% of genes near scaffold ends (potentially truncated) | 96.26 % |
% of genes from short scaffolds (< 2000 bps) | 87.85 % |
Associated GOLD sequencing projects | 94 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.68 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (73.832 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (8.411 % of family members) |
Environment Ontology (ENVO) | Unclassified (34.579 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (44.860 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 54.67% β-sheet: 0.00% Coil/Unstructured: 45.33% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.68 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Freshwater Sediment Wetland Freshwater Lake Sediment Sediment Wetland Sediment Freshwater Natural And Restored Wetlands Groundwater Sediment Soil Soil Terrestrial Soil Tropical Forest Soil Soil Agricultural Soil Arctic Peat Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Soil Soil Soil Untreated Peat Soil Natural And Restored Wetlands Soil Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Groundwater Sand Fen Bog Arabidopsis Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Arabidopsis Thaliana Rhizosphere Miscanthus Rhizosphere Miscanthus Rhizosphere Populus Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Corn Rhizosphere Switchgrass Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Corn Rhizosphere Active Sludge |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
F14TC_1075222212 | 3300000559 | Soil | SLAHEDAWRTRVALGELFARLGREHDANVHLAAALKLALSELDPE* |
Ga0062590_1023678322 | 3300004157 | Soil | KAQSYLEASLAHDDAWRTRVALGELFARLGSEHEANVHLAAALKLALSELEP* |
Ga0066678_102832411 | 3300005181 | Soil | AQTYLEASLALDNSWRANLALGEMQANLGRTDEANAHLAAALKLALAALNRR* |
Ga0068999_100951471 | 3300005205 | Natural And Restored Wetlands | YFEASLALDDAFETRVALGELFARLDRTDEANAQLAAALKLALAELRARD* |
Ga0070676_100755723 | 3300005328 | Miscanthus Rhizosphere | LEASLALDNHWRAHVALAELFAKLDRPDEANAHRSAALTLALAELAREK* |
Ga0066388_1017085342 | 3300005332 | Tropical Forest Soil | EASLALDDAYETRVALGELFAELGRTDEANTQLAAALRLALAELRERA* |
Ga0070677_102006252 | 3300005333 | Miscanthus Rhizosphere | TYLEASLALDDNWRTHLALGELHGRLDRSDLANTHLAAALKLSLVELERPGR* |
Ga0070677_108287022 | 3300005333 | Miscanthus Rhizosphere | SLAVEDGWRTRVALGELFARLGRVSDANAQLALALKLAIKELNRG* |
Ga0070660_1013742301 | 3300005339 | Corn Rhizosphere | TYLEASLALDNHWRTHVALGELFATLGRTDEANAHLAAALRLALEALRAPRH* |
Ga0070691_108620661 | 3300005341 | Corn, Switchgrass And Miscanthus Rhizosphere | SLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR* |
Ga0070661_1004597042 | 3300005344 | Corn Rhizosphere | YLEASLALDNHWRTHVALGELFTKLGRRDEAQAHLGAALRLALDALTRDEDRGSSV* |
Ga0070674_1003755801 | 3300005356 | Miscanthus Rhizosphere | TYFEASVAVEDTWRTRVALGELFARLGRASDANAQLAAALKLAIRELNRS* |
Ga0070673_1023812411 | 3300005364 | Switchgrass Rhizosphere | ASLALDNDWRAHLALGEMQAKLNHTDEANAHLAAALKLALVALERRG* |
Ga0070688_1006990202 | 3300005365 | Switchgrass Rhizosphere | YLEASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ* |
Ga0070709_110957271 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | LEASLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG* |
Ga0070713_1022184042 | 3300005436 | Corn, Switchgrass And Miscanthus Rhizosphere | ALDNHWRAHVALGEMLEKLDRRAEADAHFAAALRLALAELERS* |
Ga0070711_1011292032 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | QTYLEASLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG* |
Ga0068853_1017220481 | 3300005539 | Corn Rhizosphere | LEASLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR* |
Ga0070665_1000146751 | 3300005548 | Switchgrass Rhizosphere | LEASLALAESWRTHLALGELHAKLGRADEANAHLAAALKLALADLRSKPVEDRG* |
Ga0068857_10000945610 | 3300005577 | Corn Rhizosphere | ASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR* |
Ga0068852_1014617662 | 3300005616 | Corn Rhizosphere | EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ* |
Ga0068870_105648862 | 3300005840 | Miscanthus Rhizosphere | LEASLALDDHWRAHVALGEMLGRLGRDEAANSHLASALSLALAELKRRPR* |
Ga0068858_1003483651 | 3300005842 | Switchgrass Rhizosphere | YLEASLALDDHWRTHVALGELHARLGNAELANTHLAAALKRSLVELGRAQPSAEA* |
Ga0068858_1025127291 | 3300005842 | Switchgrass Rhizosphere | NVWQTRVALGELLVKLGRNDEANAQLAQALKLAIAELNTIRSPG* |
Ga0097621_1005828172 | 3300006237 | Miscanthus Rhizosphere | ASVAVEDAWRTRVALGELFARLNRASDASAQLAAALKLAIKELNRN* |
Ga0097621_1023256171 | 3300006237 | Miscanthus Rhizosphere | ALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG* |
Ga0068871_1011819901 | 3300006358 | Miscanthus Rhizosphere | LALDNHWRAHVALADLFAKLDRPDEANAHRSAALTLALAELAREK* |
Ga0068871_1015351072 | 3300006358 | Miscanthus Rhizosphere | ALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR* |
Ga0074060_115162171 | 3300006604 | Soil | SLALDNHWRAHVALGELLARLGRDDAANAHLATALKLALAELEQVPARNVAV* |
Ga0079221_114370372 | 3300006804 | Agricultural Soil | SLALDNHWRAHVALGELLAELGRHDEANAHLAAALKLALGELTTREG* |
Ga0075434_1005532212 | 3300006871 | Populus Rhizosphere | QSYLEASLAHEDAWRTRVALGELFARLGREHEANLHLAAALKLALSELEEG* |
Ga0079215_106477752 | 3300006894 | Agricultural Soil | AQTYYEASLALDDGWHAHVALGEMLARLGRDQEANAHLAAALKLALSELSDR* |
Ga0075424_1025074982 | 3300006904 | Populus Rhizosphere | KAQTYFEASLALDDAYETRVALGELFARLGRTDEANAQLAAALKQALSELRARS* |
Ga0105244_103791721 | 3300009036 | Miscanthus Rhizosphere | ASLAIENSWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG* |
Ga0105095_102108141 | 3300009053 | Freshwater Sediment | SLALDNTYRTHVALGELFARLGRHDEANAHLAAALKLALAELGTPG* |
Ga0075418_104878793 | 3300009100 | Populus Rhizosphere | SLALDDAWRTHLALGEMLAKLGRHDQANAHLAAALKLALAELERRTG* |
Ga0075423_103896522 | 3300009162 | Populus Rhizosphere | YLEASLALDNHWRAHVALGEMLEKLDRHDEANAHLAAALRLALGELERNES* |
Ga0105101_100829891 | 3300009171 | Freshwater Sediment | QTYYEASLALDDGWRTRVALGEMLARLGRADAANAHLAAALKLALAELERGAAPR* |
Ga0105080_10160231 | 3300009797 | Groundwater Sand | LEASLALDDTWRTRVALGELFGRLGRDSDANAQLAAALKLALAELGK* |
Ga0126379_122496491 | 3300010366 | Tropical Forest Soil | KAQSYLEASLAHEDAWRTRVALGELFARLGREHEANVHLAAALKLALSELAES* |
Ga0134125_123787351 | 3300010371 | Terrestrial Soil | HVALADLFTKLDRPDEASAHRSAALTLALAELARDE* |
Ga0105239_103455281 | 3300010375 | Corn Rhizosphere | QTYLEASLALDNHWRTHVALGELFATLGRTDQANAHLAAALRLAITALDTPAG* |
Ga0126381_1005293391 | 3300010376 | Tropical Forest Soil | SLALDDAYETRVALGELFAQLGRTDEANAQLAAALRLALAELRGRG* |
Ga0134126_127674491 | 3300010396 | Terrestrial Soil | SLALASSWRTHVALGEMLARLDQHDAANAHLAAALKLALSELRARPAP* |
Ga0134122_123323431 | 3300010400 | Terrestrial Soil | TYFEASLAIEDTWRTRVALGEHFAHRGLDGEANIQLAAAFKLALAELRRE* |
Ga0134121_132370182 | 3300010401 | Terrestrial Soil | EASLALDDNWRTHLALGELHGRLDRSDLANTHLAAALKLSLVELERPGR* |
Ga0138256_105394761 | 3300012533 | Active Sludge | TYYEASLALDDHWRSHVLLGNMLARLGREDEANAHLAAGLKLAIAELGEPGHGR* |
Ga0157296_100225631 | 3300012905 | Soil | LEASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR* |
Ga0157301_101251441 | 3300012911 | Soil | TYLEASLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERR* |
Ga0164309_104913561 | 3300012984 | Soil | AQSYLEASLAHEDAWRTRVALGELFARLGREHDANVHLAAALKIALTELEPE* |
Ga0157373_103592742 | 3300013100 | Corn Rhizosphere | EASLALDNHWRAHVALGELLAELGRQDEANAHLAAALQLALGELTTREA* |
Ga0157373_106163522 | 3300013100 | Corn Rhizosphere | LEASLALDNHWRAHVALGEMLSQLGRHDEANAHLAAALKLALADLSRD* |
Ga0157369_104160473 | 3300013105 | Corn Rhizosphere | SLALDNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR* |
Ga0157369_113225421 | 3300013105 | Corn Rhizosphere | TYLEASLALDNHWRAHVALGELLAHLGRDDEANAHLAAALKLALGELAARDGG* |
Ga0075343_11019051 | 3300014317 | Natural And Restored Wetlands | SLALEDGWRTRVALGELMVRLGRNDEANAHLAAALKLALTELRPPDA* |
Ga0157379_109329961 | 3300014968 | Switchgrass Rhizosphere | AVEDTWRTRVALGELFARLGRASDANAQLAAALKLAIRELNRS* |
Ga0132258_114641331 | 3300015371 | Arabidopsis Rhizosphere | LALDDACETRVALGDLLARLGRTDDANTQLAAALKLALAELRSRV* |
Ga0132257_1046426931 | 3300015373 | Arabidopsis Rhizosphere | SLALDNHWRAHVALGELLTELGRQDEANAHLAAALKLALGELEGRDGV* |
Ga0184605_102735971 | 3300018027 | Groundwater Sediment | SLALDHGWRAHLALGEMQAKLGRSDQANAHLAAALRLALAELEQR |
Ga0190274_108867101 | 3300018476 | Soil | SLALDDHWRAHVALGEMLGRLGRNEAANSHLASALSLALAELKRRPR |
Ga0182009_108563111 | 3300021445 | Soil | SLALDNHWRAHVALGEMLEKLDRNEEADAHLSAALKLALAELERGPPTAASTSGSEQ |
Ga0209584_101628422 | 3300025878 | Arctic Peat Soil | SVALDNHWRAHVALGEMQGRLGRDDLANSHLAMALKLALAELKQAPA |
Ga0207645_100824063 | 3300025907 | Miscanthus Rhizosphere | YLEASLALDNHWRAHVALAELFAKLDRPDEANAHRSAALTLALAELAREK |
Ga0207645_109887072 | 3300025907 | Miscanthus Rhizosphere | MTMTINGVAVDDTWRTRVALGELFARLGRASDANAQLAAALKLAIKELNRN |
Ga0207660_110887422 | 3300025917 | Corn Rhizosphere | TYLEASLALDNHWRAHVALGEMLAKLGRTDEANAHLAAALRLALGELTAREG |
Ga0207649_102417242 | 3300025920 | Corn Rhizosphere | LDNHWRAHVALADLFTKLDRPDEASAHRSAALTLALAELARDP |
Ga0207701_100454501 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | ASLAIENRWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG |
Ga0207661_103593083 | 3300025944 | Corn Rhizosphere | DNHWRAHVALGEMLAKLDRNAEADAHFAAALRLALAELERTIR |
Ga0207651_118995532 | 3300025960 | Switchgrass Rhizosphere | EASLALDNHWRAHVALGEMLARLDRHDEANAHLSAALKLALAELERQ |
Ga0207648_116534942 | 3300026089 | Miscanthus Rhizosphere | FEASLAVADTWRTRVALGELFARLNRDSDANAQLAAALKLALAELEK |
Ga0209971_10167983 | 3300027682 | Arabidopsis Thaliana Rhizosphere | ALDNHWRAHVALADLFTKLDRPDEASAHRSAALTLALAELARNE |
Ga0209177_100891052 | 3300027775 | Agricultural Soil | EASVALDNHWRAHVALGELLATLGRHDEANAHLAAALRLALAELSQD |
Ga0209797_100265123 | 3300027831 | Wetland Sediment | EASLALADVCRTHVALGELFARLGRSDEANAHLAAALKLALAELGPL |
Ga0209591_102657291 | 3300027850 | Freshwater | EASLALDTHWRTQVALGELLARLDRHDEANVHLAAALKLTLATLESRKP |
Ga0209496_101317843 | 3300027890 | Wetland | EASLALEDGWRTRVALGEMLARLGRADAANAHLAAALKLALAELEDGAAGR |
Ga0209668_101629494 | 3300027899 | Freshwater Lake Sediment | SLALDDHWRAHVLLGNMLARLGRDDEANAHLAAGLRRALADLGASGLAGNQGP |
Ga0268264_116622702 | 3300028381 | Switchgrass Rhizosphere | ALDDHWRTHVALGELHGRLGQTALANTHLAAALKRSLVALGNPNFPSALEREP |
Ga0247828_105621791 | 3300028587 | Soil | YYEASLALDDGWRARVALGEMLARLGRHDAANAHLAAALKLAIDVLSRDDVPAPFRQ |
Ga0302166_100217932 | 3300028652 | Fen | GKAQTYYEASLALDNHWRAHVALGEMHGKLGRDESANSHLATALKLALAELKRTARP |
Ga0302205_101424782 | 3300028739 | Fen | LALANDWRTHVALGEMLGQLGRVAEANDHLSAAFKLAIAELESAAA |
Ga0302163_101936722 | 3300028868 | Fen | SLALDDHWRTHVALGELHARLDRTDQANAHLAAALSRSLVELGEPRR |
Ga0311332_101148741 | 3300029984 | Fen | YFEASLALDDAYETRVALGELFARLGRTDEANAQLAAALKQALAELRSRG |
Ga0302299_104033652 | 3300030010 | Fen | GKAQTYYEASLALANDWRTHVALGEMLGQLGRVAEANDHLSAAFKLAIAELESAAA |
Ga0302217_101573692 | 3300030052 | Fen | LDNHWRAHVALGEMHGRLGRDESANSHLAAALKLALAELKRTARP |
Ga0311360_109993791 | 3300030339 | Bog | LEASLALDDHWRTHVALGELHARLDRTDQANAHLAAALSRSLVELGEPRR |
Ga0302323_10000733512 | 3300031232 | Fen | EASLALENHWRAHVALGEMQGRLGRDESANSHLAAALRLALAELKRSARP |
Ga0302321_1006286532 | 3300031726 | Fen | SLALDNHWRAHVALGEMHGRLGRDESANSHLAAALKLALAELKRTARP |
Ga0318557_100499321 | 3300031795 | Soil | SYYEASLALSDNWRTRIALGELLGQLGRHEDANAHLAAALKLAVAELERAPSA |
Ga0315297_106773211 | 3300031873 | Sediment | LEASLALDDTWRTRVALGELFGRLGRDFDANAQLAAALKLALAELEK |
Ga0315297_112720812 | 3300031873 | Sediment | EASLALDNHWRTHVALGELHGRLGREDKANPHFATALKLALAELKRPG |
Ga0310912_112694732 | 3300031941 | Soil | LALDDRWRVHLALGELHAKLERPDQANAHLAAALKLALDALERRGD |
Ga0308176_100534016 | 3300031996 | Soil | ASLALDNHWRAHVALGEMLAQLGRHGEANAHLAAALKLALGELEGREGRV |
Ga0315278_109695961 | 3300031997 | Sediment | SLALDNHWRTRVALGEMQARLGREESANSHLAMALKLALAELKRLPR |
Ga0315274_110602941 | 3300031999 | Sediment | SLALDDTWRTRVALGELFGRLGRDAEANAQLAAALKLALAALEK |
Ga0315274_116347421 | 3300031999 | Sediment | LEASLALDDTWRTRVALGELFGRIGRDADANAQLAAALKLALAELKSGSDTQ |
Ga0318562_106423632 | 3300032008 | Soil | TYYEASLALDDRWRVHLALGELHAKLERPDQANAHLAAALKLALDALERRGD |
Ga0310902_112503932 | 3300032012 | Soil | QTYFEASLAIENSWRTRVALGELFARLNRDFDANAQLAAALKLALAELDRG |
Ga0315292_110342652 | 3300032143 | Sediment | SLALGEGYRAHVALGELFARLGRDGEANTHLAAALKLALAELERA |
Ga0315271_105842161 | 3300032256 | Sediment | QTYFEASLALDNHWRAHVALGEMFGRLGRDEAANAHLASALKLALAELRRSPR |
Ga0315287_118872151 | 3300032397 | Sediment | LDDTWRTRVALGELCGRIGRDAEANAQLAAALKLALAELKSGSDTPN |
Ga0335085_125114342 | 3300032770 | Soil | EASLALEEHWRTHLALGELLARLHQAPAANTHLATALRLALDELRAAEQR |
Ga0334722_111390272 | 3300033233 | Sediment | GKAQTYLEASLALDDTWRTRVALGELFARLGRDGEANAHLAAALKLALAELDR |
Ga0316601_1007723232 | 3300033419 | Soil | AQTYLEASLAVDDSWRTRVALGELFGRLGRDGEANAQLAAALKLALAELEK |
Ga0316624_116872582 | 3300033486 | Soil | SLALDNAYATHVALGELLVRLGRTAEANAHLAAALNLALAALKAERRPEERVAAPG |
Ga0247830_111191022 | 3300033551 | Soil | ASLALDNHWRAHVALGEMLAKLDRRTEADAHFAAALRLALAELERR |
Ga0370493_0019627_1860_2018 | 3300034129 | Untreated Peat Soil | QTYLEASLALDDRYRTHVALGELFARLGRHDEANAHLAAALREALGELDAGG |
Ga0370480_0013070_2747_2914 | 3300034169 | Untreated Peat Soil | KAQTYYEASLALAPSYRTHLGLGELHAGLGRDAEANAHLAAALRLALAELDPPDR |
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