Metagenome Family F092227

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092227
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	36 residues
Representative Sequence	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMLLV
Number of Associated Samples	92
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	84.11 %
% of genes near scaffold ends (potentially truncated)	15.89 %
% of genes from short scaffolds (< 2000 bps)	49.53 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Animal → Animal distal gut (67.290 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1STU_0018.00001280 2EM039_10287713 3EM148_10092339 4EM268_10258123 5EM283_10682918 6EM308_10103895 7EM338_10066582 8EM172_10292122 9EM175_10023954 10EM177_10191192 11chfec4_1000040726 12chfec4_101248652 13chfe1id_101041872 14Ga0099618_1010665 15Ga0099618_1023453 16Ga0099626_1083502 17Ga0100176_10162532 18Ga0101793_1049093 19Ga0102633_1279552 20Ga0104830_1277772 21Ga0104319_10516222 22Ga0105481_10125012 23Ga0105758_10205522 24Ga0110941_11728791 25Ga0110941_12262812 26Ga0114155_10374072 27Ga0114156_10202352 28Ga0115417_1162982 29Ga0111272_1029922 30Ga0113869_10012618 31Ga0113869_10071042 32Ga0115670_10424362 33Ga0114310_1229402 34Ga0129313_10000896 35Ga0117817_10679902 36Ga0116652_10036932 37Ga0117818_10188032 38Ga0116653_10053982 39Ga0116653_10059662 40Ga0116653_10397242 41Ga0116653_10564392 42Ga0134454_1266272 43Ga0134394_1009457 44Ga0134384_10017485 45Ga0134447_10195061 46Ga0134572_1033372 47Ga0134487_1087513 48Ga0134421_10054903 49Ga0134421_10269152 50Ga0256630_1004438 51Ga0256628_10039050 52Ga0256721_1025983 53Ga0257034_111012 54Ga0257042_10014761 55Ga0257042_10020647 56Ga0257030_1012164 57Ga0257053_1021502 58Ga0257037_1016897 59Ga0257037_1043722 60Ga0257046_10098316 61Ga0257046_1068124 62Ga0257038_10150419 63Ga0257036_130917 64Ga0169625_1056002 65Ga0169598_1009382 66Ga0169614_1014682 67Ga0169654_1002512 68Ga0169702_1061583 69Ga0169710_1047862 70Ga0169753_1015422 71Ga0169649_10017059 72Ga0169649_1196752 73Ga0169611_1052146 74Ga0169182_1152552 75Ga0169199_10298472 76Ga0168819_1043075 77Ga0168844_10068025 78Ga0168740_1155862 79Ga0168686_1042046 80Ga0168707_1061833 81Ga0168710_1236862 82Ga0167477_10136310 83Ga0167490_1255191 84Ga0168719_10080712 85Ga0242823_100089038 86Ga0243845_10029165 87Ga0243978_10849271 88Ga0243978_11001261 89Ga0244792_1029645 90Ga0244835_10292762 91Ga0245113_1360042 92Ga0244934_1172741 93Ga0244893_1132193 94Ga0245194_1123242 95Ga0245265_1162341 96Ga0245233_1308341 97Ga0245206_1377841 98Ga0245237_10654641 99Ga0245229_10786272 100Ga0243768_1389351 101Ga0243738_10534982 102Ga0116648_1058382 103Ga0116648_1128152 104Ga0369856_1179952 105SRS054956_LANL_scaffold_13711__gene_28500 106SRS063985_LANL_scaffold_22860__gene_37759 107SRS063985_LANL_scaffold_5254__gene_6377
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1STU_0018.00001280 2EM039_10287713 3chfec4_101248652 4chfe1id_101041872 5Ga0129313_10000896 6Ga0134394_1009457 7Ga0245113_1360042 8Ga0245194_1123242
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50. 1STU_0018.00001280 2EM039_10287713 3chfec4_101248652 4chfe1id_101041872 5Ga0129313_10000896 6Ga0134394_1009457 7Ga0245113_1360042 8Ga0245194_1123242
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 88.57% β-sheet: 0.00% Coil/Unstructured: 11.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13180	PDZ_2	31.78
PF01551	Peptidase_M23	28.97
PF00398	RrnaAD	6.54
PF02687	FtsX	3.74
PF00005	ABC_tran	2.80
PF10397	ADSL_C	2.80
PF13556	HTH_30	1.87
PF13507	GATase_5	1.87
PF08352	oligo_HPY	1.87
PF00466	Ribosomal_L10	0.93

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COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	6.54
COG0244	Ribosomal protein L10	Translation, ribosomal structure and biogenesis [J]	0.93
COG4506	Uncharacterized beta-barrel protein YwiB, DUF1934 family	Function unknown [S]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Oscillospiraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	99.07 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Faecalibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium	98.13 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Faecalibacterium prausnitzii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	93.46 %
Unclassified	root	N/A	0.00 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2149837021\|STU__NODE_25248_len_861_cov_12_962834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	919	Open in IMG/M
3300000273\|EM039_1028771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1588	Open in IMG/M
3300000275\|EM148_1009233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	13409	Open in IMG/M
3300000286\|EM268_1025812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2183	Open in IMG/M
3300000289\|EM283_1068291	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3692	Open in IMG/M
3300000293\|EM308_1010389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4429	Open in IMG/M
3300000297\|EM338_1006658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	8864	Open in IMG/M
3300000329\|EM172_1029212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	828	Open in IMG/M
3300000330\|EM175_1002395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3579	Open in IMG/M
3300000357\|EM177_1019119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1396	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Engineered	Engineered	1.87%
Host-Associated	Host-Associated	98.13%

Habitat	Taxonomy	Distribution
Human	Host-Associated → Human	87.85%
Mammals	Host-Associated → Mammals	10.28%
Wastewater	Engineered → Wastewater	1.87%

Habitat	Taxonomy	Distribution
Digestive System	Host-Associated → Human → Digestive System	87.85%
Digestive System	Host-Associated → Mammals → Digestive System	10.28%
Unclassified	Engineered → Wastewater → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	85.98%
Large Intestine	Host-Associated → Mammals → Digestive System → Large Intestine	10.28%
Unclassified	Host-Associated → Human → Digestive System → Unclassified	1.87%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	85.98%
Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal	10.28%
Unclassified	Host-Associated → Human → Digestive System → Unclassified → Unclassified	1.87%
Unclassified	Engineered → Wastewater → Unclassified → Unclassified → Unclassified	1.87%

Habitat	Taxonomy	Distribution
Baboon Gut	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Baboon Gut	6.54%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	8.41%
Human	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human	19.63%
Human Adult Male Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Adult Male Fecal	0.93%
Human Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal	27.10%
Human Feces	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces	5.61%
Human Gut	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Gut	13.08%
Human Gut	Host-Associated → Human → Digestive System → Unclassified → Unclassified → Human Gut	1.87%
Human Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated	11.21%
Orangutan Group Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Orangutan Group Fecal	0.93%
Primate Fecal	Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Primate Fecal	2.80%
Wastewater	Engineered → Wastewater → Unclassified → Unclassified → Unclassified → Wastewater	1.87%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2149837021	Human fecal microbial communities from the University of Arizona (HMP) - UAf1	Host-Associated	Open in IMG/M
3300000273	Human fecal microbial communities from Cork, Ireland - EM039	Host-Associated	Open in IMG/M
3300000275	Human fecal microbial communities from Cork, Ireland - EM148	Host-Associated	Open in IMG/M
3300000286	Human fecal microbial communities from Cork, Ireland - EM268	Host-Associated	Open in IMG/M
3300000289	Human fecal microbial communities from Cork, Ireland - EM283	Host-Associated	Open in IMG/M
3300000293	Human fecal microbial communities from Cork, Ireland - EM308	Host-Associated	Open in IMG/M
3300000297	Human fecal microbial communities from Cork, Ireland - EM338	Host-Associated	Open in IMG/M
3300000329	Human fecal microbial communities from Cork, Ireland - EM172	Host-Associated	Open in IMG/M
3300000330	Human fecal microbial communities from Cork, Ireland - EM175	Host-Associated	Open in IMG/M
3300000357	Human fecal microbial communities from Cork, Ireland - EM177	Host-Associated	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
STU_0018.00001280	2149837021	Human Fecal	MKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV
EM039_10287713	3300000273	Human Fecal	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLPL*
EM148_10092339	3300000275	Human Fecal	MNEQKRKRALRIGCLVLAGVFVLSLLGSIFMMLPL*
EM268_10258123	3300000286	Human Fecal	MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF*
EM283_10682918	3300000289	Human Fecal	MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV*
EM308_10103895	3300000293	Human Fecal	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY*
EM338_10066582	3300000297	Human Fecal	MKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV*
EM172_10292122	3300000329	Human Fecal	MNEQKRKRALRIGCLVLAGVFVLSLLGSILMMLLL*
EM175_10023954	3300000330	Human Fecal	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV*
EM177_10191192	3300000357	Human Fecal	MKEQKQKRWLRIGCLVLAGVFALSLLGSVVMMLLY*
chfec4_1000040726	3300001525	Primate Fecal	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV*
chfec4_101248652	3300001525	Primate Fecal	MNEQKHKRWLRIGCLILAGVFALSLLSSVIMMLLF*
chfe1id_101041872	3300001528	Primate Fecal	MNEEKRKRFLRIGCLLLAGVFLLSVLGSVVLMLLA*
Ga0099618_1010665	3300006298	Human	MNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV*
Ga0099618_1023453	3300006298	Human	MNEQKRKRVLRIGCLVLAGVFVLSLLGSILMMLLL*
Ga0099626_1083502	3300006312	Human	MNEEKRKRFLRIGCLLLAGVFLLSVLGSVVLMLLV*
Ga0100176_10162532	3300006463	Human	MNEQKHKRLLRIGCLLLAGLFALSLLGSVLMMLLF*
Ga0101793_1049093	3300006739	Human	MNEQKRKRILRAGCLLLAGIFLLSVLGSVVLMLLV*
Ga0102633_1279552	3300007109	Human	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMLLV*
Ga0104830_1277772	3300007296	Human	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLLF*
Ga0104319_10516222	3300007299	Human	MNEQKHKRLLRIGCLLLAGVFALSLLGSVLMMLLF*
Ga0105481_10125012	3300007524	Human	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMFLV*
Ga0105758_10205522	3300007742	Human	MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY*
Ga0110941_11728791	3300008067	Wastewater	LMKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV*
Ga0110941_12262812	3300008067	Wastewater	MNEQKRKRTLRVGCLILAGVFLLSVLGSVILMFLV*
Ga0114155_10374072	3300008096	Human	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMLLLY*
Ga0114156_10202352	3300008282	Human	MNDKKRKRILRVGCLILACVFGLSLLGSLVMMLLV*
Ga0115417_1162982	3300008421	Human	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMFLV*
Ga0111272_1029922	3300008620	Human	MKEEKRKRILRVGCLILAGIFALSMLGSVVMLLLV*
Ga0113869_10012618	3300008705	Human	MKEEKRKRILRVGCLILAGIFALSVLGSVVMMLLV*
Ga0113869_10071042	3300008705	Human	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMLLV*
Ga0115670_10424362	3300008725	Human	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMLLV*
Ga0114310_1229402	3300009343	Human	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMFLV*
Ga0129313_10000896	3300010279	Orangutan Group Fecal	MKERKRKNAMRIACLVMAGVFVLSLLASILVMLF*
Ga0117817_10679902	3300013752	Human Gut	SMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY*
Ga0116652_10036932	3300013901	Baboon Gut	MKEQKQKRWLRIGCLILAGVFALSLLGSVIMMLLY*
Ga0117818_10188032	3300013946	Human Gut	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLL*
Ga0116653_10053982	3300013947	Baboon Gut	MNEEKRKRFLRIGCLLLAGVFLLSVVGSVLLMLLA*
Ga0116653_10059662	3300013947	Baboon Gut	MNEEKRKRFLRLGCLLLAGVFLLSVLGSVVLMLLV*
Ga0116653_10397242	3300013947	Baboon Gut	MNEQKRKRVLRIGCLILAGVFALSLLGSVVVMLLA*
Ga0116653_10564392	3300013947	Baboon Gut	MNEQKHKRWLRIGCLLLAGVFALSLLGSVIMMLLY*
Ga0134454_1266272	3300014542	Human Fecal	MNEQKRKRILRAGCLLLAGVFLLSVLGSVILMFLV*
Ga0134394_1009457	3300014560	Human Fecal	MKEDKRKRLLRLGCLVLAGVFVLSLVGSLAMMLLF*
Ga0134384_10017485	3300014787	Human Fecal	MKEEKRKRILRVGCLILACVFGLSLLGSLVMMLLV*
Ga0134447_10195061	3300014791	Human Fecal	MNEQKRKRMLRIACLLLAGVFVLSLLGSILMMLLL*
Ga0134572_1033372	3300014931	Human Fecal	MNEQKRKRVLRIGCLVLAGVFVLPLLGSIFMMLPL*
Ga0134487_1087513	3300014948	Human Fecal	DKGGHLAIMNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV*
Ga0134421_10054903	3300014958	Human Fecal	MNKQKRKRVLRIGCLVLAGVFVLSLLGSILMMLLL*
Ga0134421_10269152	3300014958	Human Fecal	MNEEKRKRFLRVGGLLLAGVFLLSVLGSVVLMLLV*
Ga0256630_1004438	3300023289	Human Gut	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
Ga0256628_10039050	3300023290	Human Gut	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMLLV
Ga0256721_1025983	3300023312	Human Gut	MNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV
Ga0257034_111012	3300023479	Human Gut	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMLLV
Ga0257042_10014761	3300023487	Human Gut	MNEQKHKRLLRIGCLLLAGLFALSLLGSVLMMLLF
Ga0257042_10020647	3300023487	Human Gut	MNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0257030_1012164	3300023489	Human Gut	MNEQKRKRILRAGCLLLAGVFLLSVLGSVVLMLLV
Ga0257053_1021502	3300023490	Human Gut	MNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0257037_1016897	3300023492	Human Gut	MKEEKRKRILRVGCLILAGIFALSMLGSVIMMLLV
Ga0257037_1043722	3300023492	Human Gut	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFMMLPL
Ga0257046_10098316	3300023498	Human Gut	MKEEKRKRILRVGCLILAGIFALSVLGSVVMMLLV
Ga0257046_1068124	3300023498	Human Gut	MNEQKRKRALRIGCLVLAGVFVLSLLGSIFMMLPL
Ga0257038_10150419	3300023504	Human Gut	MNEEKRKRFLRIGCLLLAGVFLLSVLGSVVLMLLV
Ga0257036_130917	3300023718	Human Gut	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMFLV
Ga0169625_1056002	3300029010	Human Host-Associated	MNEQKRKRILRAGCLLLAGIFLLSVLGSVVLMLLV
Ga0169598_1009382	3300029013	Human Host-Associated	MNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV
Ga0169614_1014682	3300029016	Human Host-Associated	MNEQKRKRILRVGCLILAGAFLLSVLGSVILMFLV
Ga0169654_1002512	3300029019	Human Host-Associated	MNEQKHKRLLRIGCLLLAGVFALSLLGSVLMMLLF
Ga0169702_1061583	3300029020	Human Host-Associated	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMFLV
Ga0169710_1047862	3300029021	Human Host-Associated	MNEQKHKRWLRIGCLVLAGVFALSLLSSVIMLLLY
Ga0169753_1015422	3300029032	Human Host-Associated	MNDKKRKRILRVGCLILACVFGLSLLGSLVMMLLV
Ga0169649_10017059	3300029039	Human Host-Associated	MNEQKHKRWMRIGCLVLAGVFALSLLSSVIMMLLY
Ga0169649_1196752	3300029039	Human Host-Associated	MNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0169611_1052146	3300029058	Human Host-Associated	MNEQKRKRVLRIGCLVLAGVFVLLLLGSILMMLLL
Ga0169182_1152552	3300029092	Human Host-Associated	MNEQKRKHILRVGCLILAGVFLLSVLGSVILMFLV
Ga0169199_10298472	3300029105	Human Host-Associated	MNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLI
Ga0168819_1043075	3300029114	Host-Associated	MNEQKRKRALRIGCLVLAGVFVLSLLGSISMMLPL
Ga0168844_10068025	3300029118	Host-Associated	MKEQKQKRWLRIGCLVLAGVFALSLLGSVVMMLLY
Ga0168740_1155862	3300029135	Host-Associated	MNEQKHKRLLRIGCLVLAGVFALSLLGSVLMMLLF
Ga0168686_1042046	3300029204	Host-Associated	MNEQKRKRVLRIGCLVLAGVFVLSLLGSIFXXXXXXX
Ga0168707_1061833	3300029220	Host-Associated	MKEEKRKRILRVGCLILAGIFALSMLGSMVMMLLV
Ga0168710_1236862	3300029232	Host-Associated	MNEQKRKRVLRIGCLVLAGVFVLSLLGSILMMLPL
Ga0167477_10136310	3300029237	Host-Associated	MNEQKRKCVLRIGCLVLAGVFVLSLLGSILMMLLL
Ga0167490_1255191	3300029241	Host-Associated	FMNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0168719_10080712	3300029247	Host-Associated	MKEQKQKRWLRIGCLILAGIFTLSVLGSVVMMLLY
Ga0242823_100089038	3300029339	Human Feces	MNDKKRKRILRVGCLILAFVFGLSLLGSLVMMLLV
Ga0243845_10029165	3300029353	Human Feces	MKEEKRKRILRVGCLILAGIFALSMLGSVVMLLLV
Ga0243978_10849271	3300029378	Human Feces	VFMNEQKRKRMLRIACLLLAGVFVLSLLGSIFMMLLF
Ga0243978_11001261	3300029378	Human Feces	HLAIMNEEKRKRFLRVGCLLLAGVFLLSVLGSVVLMLLV
Ga0244792_1029645	3300029517	Human Fecal	MNEQKRKRALRIGCLVLAGVFVLSLLXXXGSIFMMLPL
Ga0244835_10292762	3300029522	Human Fecal	VWYSMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
Ga0245113_1360042	3300029552	Human Fecal	MNEQKRKRVLRIGXXXXXXXXXFVLSLLGSILMMLLL
Ga0244934_1172741	3300029566	Human Fecal	EMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0244893_1132193	3300029579	Human Fecal	MKEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0245194_1123242	3300029684	Human Fecal	QRRPQGEMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
Ga0245265_1162341	3300029702	Human Fecal	YQRRPFGPMNEEKRKRILRWGCLILAGVFTLSLLGSVVVMLLV
Ga0245233_1308341	3300029710	Human Fecal	SGLMKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV
Ga0245206_1377841	3300029712	Human Fecal	GVWYSMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
Ga0245237_10654641	3300029718	Human Fecal	PSGLMKEEKRKRILRVGCLILAGIFALSMLGSVVMMLLV
Ga0245229_10786272	3300029720	Human Fecal	MNEQKRKRILRAGCLLLAGVFLLSVLGSVILMFLV
Ga0243768_1389351	3300029774	Human Feces	RGQRRPQGEMNEQKRKRILRVGCLLLAGVFLLSVLGSVILMLLV
Ga0243738_10534982	3300029793	Human Feces	MNEQKRKRILRVGCLILAGVFLLSVLGSVVLMLLV
Ga0116648_1058382	3300029946	Baboon Gut	MNEQKHKRWLRIGCLLLAGVFALSLLGSVIMMLLY
Ga0116648_1128152	3300029946	Baboon Gut	MKEQKQKRWLRIGCLILAGVFALSLLGSVVMMLLY
Ga0369856_1179952	3300033157	Human Adult Male Fecal	MKEEKRKRILRVGCLILAGIFVLSMLGSVVMMLLV
SRS054956_LANL_scaffold_13711__gene_28500	7000000006	Human	GEMNEQKRKRILRVGCLILAGVFLLSVLGSVILMFLV
SRS063985_LANL_scaffold_22860__gene_37759	7000000444	Human	YSMNEQKHKRWLRIGCLVLAGVFALSLLSSVIMMLLY
SRS063985_LANL_scaffold_5254__gene_6377	7000000444	Human	YSMNEQKHKRLLRIGCLLLAGLFALSLLGSVLMMLLF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092227

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences