NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092203

Metagenome Family F092203

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092203
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 45 residues
Representative Sequence VLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Number of Associated Samples 76
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 83.18 %
Associated GOLD sequencing projects 71
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (71.963 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(22.430 % of family members)
Environment Ontology (ENVO) Unclassified
(66.355 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.850 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58
1JGI20151J14362_101052591
2JGI20158J14315_100849131
3GOS2250_10422912
4GOS2242_10030773
5GOScombined01_1033645471
6GOScombined01_1035362901
7JGI26380J51729_101275871
8JGI26273J51734_101354421
9Ga0066605_103807782
10Ga0066364_100160564
11Ga0066364_100262931
12Ga0068472_104149582
13Ga0068495_16386941
14Ga0099954_13050891
15Ga0111541_102546281
16Ga0115551_14072781
17Ga0114994_104894361
18Ga0114932_108674941
19Ga0115568_104443431
20Ga0114933_106931852
21Ga0115012_108420252
22Ga0133547_105032475
23Ga0133547_111120281
24Ga0160422_102826221
25Ga0163110_106361772
26Ga0163110_110460081
27Ga0163109_112372711
28Ga0163111_109597851
29Ga0163111_109695381
30Ga0163111_109793331
31Ga0163111_114809272
32Ga0181415_11304402
33Ga0187222_11040262
34Ga0181421_10867941
35Ga0181392_12140842
36Ga0181422_10191621
37Ga0181422_10463342
38Ga0181422_11957651
39Ga0181423_11240271
40Ga0181424_101730912
41Ga0181424_103976202
42Ga0181565_102265251
43Ga0181565_106005521
44Ga0181552_105581771
45Ga0181580_106151771
46Ga0181582_108089212
47Ga0181587_109737771
48Ga0181587_109754131
49Ga0181585_102676451
50Ga0181585_104526661
51Ga0181585_106933472
52Ga0181567_107487421
53Ga0181593_105411811
54Ga0181568_109994601
55Ga0181568_110624791
56Ga0181574_104892811
57Ga0211673_10028387
58Ga0211508_10804492
59Ga0211612_10222701
60Ga0211498_100879581
61Ga0211678_100075931
62Ga0211678_101075801
63Ga0211678_102438292
64Ga0211675_100643491
65Ga0211675_101779362
66Ga0211666_100073501
67Ga0211587_102816201
68Ga0211557_100025521
69Ga0211557_101534401
70Ga0211580_102789811
71Ga0211620_104820121
72Ga0211576_102122391
73Ga0211564_100595074
74Ga0211638_100009811
75Ga0211638_100074511
76Ga0211638_100504011
77Ga0211641_100365896
78Ga0211676_101723221
79Ga0211475_105161981
80Ga0255783_103258421
81Ga0255743_100434531
82Ga0255761_101767611
83Ga0255761_102887291
84Ga0255777_100721531
85Ga0255777_103824431
86Ga0255759_100255049
87Ga0233438_100329091
88Ga0228658_11670841
89Ga0228652_10517881
90Ga0209309_101840801
91Ga0209309_103747022
92Ga0209631_100123641
93Ga0209425_102749871
94Ga0208390_10020951
95Ga0208390_10160001
96Ga0209709_102385421
97Ga0209090_102808541
98Ga0315331_104735671
99Ga0315331_109150942
100Ga0310343_105652761
101Ga0310343_107811131
102Ga0315330_100195751
103Ga0315330_101266421
104Ga0315330_105644211
105Ga0315315_109315661
106Ga0315315_111515151
107Ga0315315_112761961
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 15.56%    β-sheet: 26.67%    Coil/Unstructured: 57.78%
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51015202530354045VLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVASSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
28.0%72.0%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Seawater
Marine
Surface Seawater
Seawater
Marine
Seawater
Seawater
Marine
Seawater
Salt Marsh
Marine
Pelagic Marine
Pelagic Marine
Seawater
Deep Subsurface
10.3%6.5%5.6%7.5%20.6%22.4%3.7%3.7%9.3%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI20151J14362_1010525913300001346Pelagic MarineNLVVLARRFRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
JGI20158J14315_1008491313300001355Pelagic MarineVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS*
GOS2250_104229123300001957MarineLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS*
GOS2242_100307733300001967MarineLVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS*
GOScombined01_10336454713300002040MarineTHPINHFSATQLTFLPLKLEPLGFSLIGQLRVAS*
GOScombined01_10353629013300002040MarineNLVVLARRCRRYRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
JGI26380J51729_1012758713300003619MarineSPRNLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS*
JGI26273J51734_1013544213300003620MarineNLAVLARRFRRYRQAVPMNYSSATRFTFLPFXLEPLGFSLNGQLRVAS*
Ga0066605_1038077823300004279MarineRLSPRNLAVLARRFRRYRQAVPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
Ga0066364_1001605643300005960MarineRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS*
Ga0066364_1002629313300005960MarineYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS*
Ga0068472_1041495823300006313MarineRIDLARRCTRYRQATIAHNSSATLQDFLPPKLEPLGFSSDGQLRVAS*
Ga0068495_163869413300006337MarineLVVLARRFRRYRQAIPMNYSSATRFIFLPLKLEPLGFSLNGQLRVAS*
Ga0099954_130508913300006350MarineARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSLNGQLRVAS*
Ga0111541_1025462813300008097MarineRYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
Ga0115551_140727813300009193Pelagic MarineVLARRFRRYRQAFPMNYSSATRSTFLPFNLEPLGFSLNGQLRVAS*
Ga0114994_1048943613300009420MarineLVVLARRCRRYRQAILMNYSSATRFIFLSFKLGPLGFSLNGQLTVAF*
Ga0114932_1086749413300009481Deep SubsurfaceSPRNLVVLARRFRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
Ga0115568_1044434313300009498Pelagic MarineQAEPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS*
Ga0114933_1069318523300009703Deep SubsurfaceRNLVVLARRFRRYRQAVPMNYSSATRSTFLPFELEPLGFSPNGQLRVAS*
Ga0115012_1084202523300009790MarineRLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS*
Ga0133547_1050324753300010883MarineSPINLVVLARRFRRYRQAFPMNYSSATRFTFLPFEFEPLGFFSNGQLRVAS*
Ga0133547_1111202813300010883MarineRYRQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS*
Ga0160422_1028262213300012919SeawaterRYRRTHPINHFSATQLTFLPFKLEPLGFSLIGQLRVAS*
Ga0163110_1063617723300012928Surface SeawaterVLARRFRRYRQAFPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS*
Ga0163110_1104600813300012928Surface SeawaterRRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRIAS*
Ga0163109_1123727113300012936Surface SeawaterPRNLVVLARRFRRYRQAIPMDYSSATRSIFLPFKLEPLGFSLIGQLRVAS*
Ga0163111_1095978513300012954Surface SeawaterQAIPMNYSSATRFIFLPFKLEPLGFSSNGQLRVAS*
Ga0163111_1096953813300012954Surface SeawaterLSPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS*
Ga0163111_1097933313300012954Surface SeawaterISRLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLDPLGFSLNGQLRVAS*
Ga0163111_1148092723300012954Surface SeawaterLVVLARRFRRYRQAIPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS*
Ga0181415_113044023300017732SeawaterVLARRCRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLIGQLRVAS
Ga0187222_110402623300017734SeawaterLSPRNLVVLARRCRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0181421_108679413300017741SeawaterPRNLVVLARRFRRYRQAIPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0181392_121408423300017749SeawaterYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0181422_101916213300017762SeawaterISRLSPRNLVVLARRFRRYRQAVSMNYSSATRFTFLPFKLEPLGFSSIGQLRVAS
Ga0181422_104633423300017762SeawaterPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0181422_119576513300017762SeawaterRFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVASQLI
Ga0181423_112402713300017781SeawaterRNLAVLARRFRRYRQAFPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0181424_1017309123300017786SeawaterRNLVVLARRFRRYRQAVSVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0181424_1039762023300017786SeawaterPRNLVVLARRFRRYRQAFPMNYSSATRSTFLPFKLEPLGFSLIGQLRVAS
Ga0181565_1022652513300017818Salt MarshVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0181565_1060055213300017818Salt MarshPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
Ga0181552_1055817713300017824Salt MarshRNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0181580_1061517713300017956Salt MarshPRNLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0181582_1080892123300017958Salt MarshVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
Ga0181587_1097377713300017968Salt MarshLSPRNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0181587_1097541313300017968Salt MarshLSPRNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0181585_1026764513300017969Salt MarshVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0181585_1045266613300017969Salt MarshLSPRNLVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0181585_1069334723300017969Salt MarshLSPRNLVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP
Ga0181567_1074874213300018418Salt MarshQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
Ga0181593_1054118113300018423Salt MarshRRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP
Ga0181568_1099946013300018428Salt MarshRYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0181568_1106247913300018428Salt MarshRNLVVLARRFRRYRQAVPMNYSSATRFIFLPFELAPLGLSSNGQLRVAS
Ga0181574_1048928113300020056Salt MarshRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0211673_100283873300020323MarineRHALPLRYFSATPQSFLPFRLEPLGFSLNGQLRVAS
Ga0211508_108044923300020337MarineNLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0211612_102227013300020356MarinePNLPINHFSATQLTFLPFELGPLGFSPNGQLRVAS
Ga0211498_1008795813300020380MarineLARRFRRYRQAIPMNYSSATRSIFLPFKLEPLGFSLNGQLRVAS
Ga0211678_1000759313300020388MarineRYRQAISMNYSSATRFTFLPLKLEPLGFSLNGQLRVAS
Ga0211678_1010758013300020388MarineYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0211678_1024382923300020388MarineNLVVLARRFRRYRQAIPMNYSSATRSIFLPFKLEPLGFSLNGQLRVAS
Ga0211675_1006434913300020391MarineRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0211675_1017793623300020391MarineNLVVLARRFRRYRQAVPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAP
Ga0211666_1000735013300020392MarineNLVVLARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSSNGQLRVAS
Ga0211587_1028162013300020411MarinePPNLPINHFSATQLTFLPFKLGPLGFSLNGQLRVAS
Ga0211557_1000255213300020418MarineVRRCRRYRRTHPINHFSATQLTFLPFKLEPLGFSLIGQLRVAS
Ga0211557_1015344013300020418MarineVRRCRRYRRTHPINHFSATQLTFLPLKLEPLGFSLIGQLRVAS
Ga0211580_1027898113300020420MarineRQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0211620_1048201213300020424MarineLVVLARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSLNGQLRVAS
Ga0211576_1021223913300020438MarineNLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0211564_1005950743300020445MarineVGATAEPPINHFSATQLTFLPFKLEPLGFSLTGQLRVAS
Ga0211638_1000098113300020448MarineTVVLARRCRRYRHALPLRYFSATPQSFLPFRLEPLGFSLNGQLRVAS
Ga0211638_1000745113300020448MarineRQAIPMDYSSATRSTFLPFKLEPLGLSLNGQLRIAS
Ga0211638_1005040113300020448MarineRQAIPMNYSSATRFTFLPFKLEPLGLSLNGQLRVAS
Ga0211641_1003658963300020450MarineRRFRRYRQAFPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0211676_1017232213300020463MarineRRYRQAIPMNYSSATRSTFLPLKLEPLGLSLNGQLRVAS
Ga0211475_1051619813300020468MarineRRFRRYRQAVPMNYSSATRSTFLPFELEPLGFSPNGQLRVAS
Ga0255783_1032584213300022923Salt MarshRLSPRNLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS
Ga0255743_1004345313300023110Salt MarshRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
Ga0255761_1017676113300023170Salt MarshARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP
Ga0255761_1028872913300023170Salt MarshNLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0255777_1007215313300023175Salt MarshRRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0255777_1038244313300023175Salt MarshARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
Ga0255759_1002550493300023178Salt MarshRLSPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS
(restricted) Ga0233438_1003290913300024255SeawaterISRLSPRNLAVLARRCRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0228658_116708413300024297SeawaterNLAVLARRCRRYRQAISMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0228652_105178813300024326SeawaterRNLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0209309_1018408013300025881Pelagic MarineQAEPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0209309_1037470223300025881Pelagic MarineLARRFMRYRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0209631_1001236413300025890Pelagic MarineISRLSPRNLVVLARRFRRYRQAIPVNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0209425_1027498713300025897Pelagic MarineFWRYRQAIPVNYSSATRSTFLPFELEPLGFSSNGQLRVAS
Ga0208390_100209513300026081MarineISRLSPRNLVVLARRFRRYRQAFPMNYSSATRSTFLPSKLEPLGFSLNGQLRVAS
Ga0208390_101600013300026081MarineRRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS
Ga0209709_1023854213300027779MarineARRCRSYRQAYPINYFSSTKLIFLPFKLEPLGFFLNGQLRVAS
Ga0209090_1028085413300027813MarineLVVLARRCRRYRQAILMNYSSATRFIFLSFKLGPLGFSLNGQLTVAF
Ga0315331_1047356713300031774SeawaterISRLSPRNLAVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0315331_1091509423300031774SeawaterSPSNLVVLARRFRRYRQAIPVNYSSATRFTFLPFELEPLGFSPNGQLRVAS
Ga0310343_1056527613300031785SeawaterYRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0310343_1078111313300031785SeawaterRRFRRYRRTCPINHFSATQLTFLPLELEPLGFSSLGQLRVAS
Ga0315330_1001957513300032047SeawaterRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0315330_1012664213300032047SeawaterSRLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS
Ga0315330_1056442113300032047SeawaterRRFRRYRQAVPMNYSSATRFTFLPSELEPLGFSPNGQLRVAS
Ga0315315_1093156613300032073SeawaterRRFMRYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS
Ga0315315_1115151513300032073SeawaterVLARRCRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS
Ga0315315_1127619613300032073SeawaterVLARRFRRYRQAVSVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS


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