Basic Information | |
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Family ID | F092203 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 45 residues |
Representative Sequence | VLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Number of Associated Samples | 76 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 100.00 % |
% of genes from short scaffolds (< 2000 bps) | 83.18 % |
Associated GOLD sequencing projects | 71 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (71.963 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (22.430 % of family members) |
Environment Ontology (ENVO) | Unclassified (66.355 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (87.850 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 15.56% β-sheet: 26.67% Coil/Unstructured: 57.78% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Marine Seawater Marine Surface Seawater Seawater Marine Seawater Seawater Marine Seawater Salt Marsh Marine Pelagic Marine Pelagic Marine Seawater Deep Subsurface |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI20151J14362_101052591 | 3300001346 | Pelagic Marine | NLVVLARRFRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
JGI20158J14315_100849131 | 3300001355 | Pelagic Marine | VLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS* |
GOS2250_10422912 | 3300001957 | Marine | LARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS* |
GOS2242_10030773 | 3300001967 | Marine | LVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS* |
GOScombined01_1033645471 | 3300002040 | Marine | THPINHFSATQLTFLPLKLEPLGFSLIGQLRVAS* |
GOScombined01_1035362901 | 3300002040 | Marine | NLVVLARRCRRYRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
JGI26380J51729_101275871 | 3300003619 | Marine | SPRNLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS* |
JGI26273J51734_101354421 | 3300003620 | Marine | NLAVLARRFRRYRQAVPMNYSSATRFTFLPFXLEPLGFSLNGQLRVAS* |
Ga0066605_103807782 | 3300004279 | Marine | RLSPRNLAVLARRFRRYRQAVPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
Ga0066364_100160564 | 3300005960 | Marine | RNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS* |
Ga0066364_100262931 | 3300005960 | Marine | YRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS* |
Ga0068472_104149582 | 3300006313 | Marine | RIDLARRCTRYRQATIAHNSSATLQDFLPPKLEPLGFSSDGQLRVAS* |
Ga0068495_16386941 | 3300006337 | Marine | LVVLARRFRRYRQAIPMNYSSATRFIFLPLKLEPLGFSLNGQLRVAS* |
Ga0099954_13050891 | 3300006350 | Marine | ARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSLNGQLRVAS* |
Ga0111541_102546281 | 3300008097 | Marine | RYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
Ga0115551_14072781 | 3300009193 | Pelagic Marine | VLARRFRRYRQAFPMNYSSATRSTFLPFNLEPLGFSLNGQLRVAS* |
Ga0114994_104894361 | 3300009420 | Marine | LVVLARRCRRYRQAILMNYSSATRFIFLSFKLGPLGFSLNGQLTVAF* |
Ga0114932_108674941 | 3300009481 | Deep Subsurface | SPRNLVVLARRFRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
Ga0115568_104443431 | 3300009498 | Pelagic Marine | QAEPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS* |
Ga0114933_106931852 | 3300009703 | Deep Subsurface | RNLVVLARRFRRYRQAVPMNYSSATRSTFLPFELEPLGFSPNGQLRVAS* |
Ga0115012_108420252 | 3300009790 | Marine | RLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS* |
Ga0133547_105032475 | 3300010883 | Marine | SPINLVVLARRFRRYRQAFPMNYSSATRFTFLPFEFEPLGFFSNGQLRVAS* |
Ga0133547_111120281 | 3300010883 | Marine | RYRQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS* |
Ga0160422_102826221 | 3300012919 | Seawater | RYRRTHPINHFSATQLTFLPFKLEPLGFSLIGQLRVAS* |
Ga0163110_106361772 | 3300012928 | Surface Seawater | VLARRFRRYRQAFPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS* |
Ga0163110_110460081 | 3300012928 | Surface Seawater | RRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRIAS* |
Ga0163109_112372711 | 3300012936 | Surface Seawater | PRNLVVLARRFRRYRQAIPMDYSSATRSIFLPFKLEPLGFSLIGQLRVAS* |
Ga0163111_109597851 | 3300012954 | Surface Seawater | QAIPMNYSSATRFIFLPFKLEPLGFSSNGQLRVAS* |
Ga0163111_109695381 | 3300012954 | Surface Seawater | LSPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS* |
Ga0163111_109793331 | 3300012954 | Surface Seawater | ISRLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLDPLGFSLNGQLRVAS* |
Ga0163111_114809272 | 3300012954 | Surface Seawater | LVVLARRFRRYRQAIPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS* |
Ga0181415_11304402 | 3300017732 | Seawater | VLARRCRRYRQAIPVNYSSATRSTFLPFKLEPLGFSLIGQLRVAS |
Ga0187222_11040262 | 3300017734 | Seawater | LSPRNLVVLARRCRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0181421_10867941 | 3300017741 | Seawater | PRNLVVLARRFRRYRQAIPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0181392_12140842 | 3300017749 | Seawater | YRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0181422_10191621 | 3300017762 | Seawater | ISRLSPRNLVVLARRFRRYRQAVSMNYSSATRFTFLPFKLEPLGFSSIGQLRVAS |
Ga0181422_10463342 | 3300017762 | Seawater | PRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0181422_11957651 | 3300017762 | Seawater | RFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVASQLI |
Ga0181423_11240271 | 3300017781 | Seawater | RNLAVLARRFRRYRQAFPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0181424_101730912 | 3300017786 | Seawater | RNLVVLARRFRRYRQAVSVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0181424_103976202 | 3300017786 | Seawater | PRNLVVLARRFRRYRQAFPMNYSSATRSTFLPFKLEPLGFSLIGQLRVAS |
Ga0181565_102265251 | 3300017818 | Salt Marsh | VLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0181565_106005521 | 3300017818 | Salt Marsh | PRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
Ga0181552_105581771 | 3300017824 | Salt Marsh | RNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0181580_106151771 | 3300017956 | Salt Marsh | PRNLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0181582_108089212 | 3300017958 | Salt Marsh | VLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
Ga0181587_109737771 | 3300017968 | Salt Marsh | LSPRNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0181587_109754131 | 3300017968 | Salt Marsh | LSPRNLVVLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0181585_102676451 | 3300017969 | Salt Marsh | VLARRFRRYRQAFPMDYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0181585_104526661 | 3300017969 | Salt Marsh | LSPRNLVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0181585_106933472 | 3300017969 | Salt Marsh | LSPRNLVVLARRFRRYRQAVPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP |
Ga0181567_107487421 | 3300018418 | Salt Marsh | QAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
Ga0181593_105411811 | 3300018423 | Salt Marsh | RRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP |
Ga0181568_109994601 | 3300018428 | Salt Marsh | RYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0181568_110624791 | 3300018428 | Salt Marsh | RNLVVLARRFRRYRQAVPMNYSSATRFIFLPFELAPLGLSSNGQLRVAS |
Ga0181574_104892811 | 3300020056 | Salt Marsh | RQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0211673_10028387 | 3300020323 | Marine | RHALPLRYFSATPQSFLPFRLEPLGFSLNGQLRVAS |
Ga0211508_10804492 | 3300020337 | Marine | NLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0211612_10222701 | 3300020356 | Marine | PNLPINHFSATQLTFLPFELGPLGFSPNGQLRVAS |
Ga0211498_100879581 | 3300020380 | Marine | LARRFRRYRQAIPMNYSSATRSIFLPFKLEPLGFSLNGQLRVAS |
Ga0211678_100075931 | 3300020388 | Marine | RYRQAISMNYSSATRFTFLPLKLEPLGFSLNGQLRVAS |
Ga0211678_101075801 | 3300020388 | Marine | YRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0211678_102438292 | 3300020388 | Marine | NLVVLARRFRRYRQAIPMNYSSATRSIFLPFKLEPLGFSLNGQLRVAS |
Ga0211675_100643491 | 3300020391 | Marine | RQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0211675_101779362 | 3300020391 | Marine | NLVVLARRFRRYRQAVPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAP |
Ga0211666_100073501 | 3300020392 | Marine | NLVVLARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSSNGQLRVAS |
Ga0211587_102816201 | 3300020411 | Marine | PPNLPINHFSATQLTFLPFKLGPLGFSLNGQLRVAS |
Ga0211557_100025521 | 3300020418 | Marine | VRRCRRYRRTHPINHFSATQLTFLPFKLEPLGFSLIGQLRVAS |
Ga0211557_101534401 | 3300020418 | Marine | VRRCRRYRRTHPINHFSATQLTFLPLKLEPLGFSLIGQLRVAS |
Ga0211580_102789811 | 3300020420 | Marine | RQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0211620_104820121 | 3300020424 | Marine | LVVLARRFRRYRQAIPMNYSSATRFIFLPFKLEPLGFSLNGQLRVAS |
Ga0211576_102122391 | 3300020438 | Marine | NLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0211564_100595074 | 3300020445 | Marine | VGATAEPPINHFSATQLTFLPFKLEPLGFSLTGQLRVAS |
Ga0211638_100009811 | 3300020448 | Marine | TVVLARRCRRYRHALPLRYFSATPQSFLPFRLEPLGFSLNGQLRVAS |
Ga0211638_100074511 | 3300020448 | Marine | RQAIPMDYSSATRSTFLPFKLEPLGLSLNGQLRIAS |
Ga0211638_100504011 | 3300020448 | Marine | RQAIPMNYSSATRFTFLPFKLEPLGLSLNGQLRVAS |
Ga0211641_100365896 | 3300020450 | Marine | RRFRRYRQAFPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0211676_101723221 | 3300020463 | Marine | RRYRQAIPMNYSSATRSTFLPLKLEPLGLSLNGQLRVAS |
Ga0211475_105161981 | 3300020468 | Marine | RRFRRYRQAVPMNYSSATRSTFLPFELEPLGFSPNGQLRVAS |
Ga0255783_103258421 | 3300022923 | Salt Marsh | RLSPRNLVVLARRFRRYRQAIPMNYSSATRSTFLPFKLEPLGLSLNGQLRVAS |
Ga0255743_100434531 | 3300023110 | Salt Marsh | RRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
Ga0255761_101767611 | 3300023170 | Salt Marsh | ARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAP |
Ga0255761_102887291 | 3300023170 | Salt Marsh | NLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0255777_100721531 | 3300023175 | Salt Marsh | RRYRQAIPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0255777_103824431 | 3300023175 | Salt Marsh | ARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
Ga0255759_100255049 | 3300023178 | Salt Marsh | RLSPRNLVVLARRFRRYRQAIPMNYSSATRFTFLPFELEPLGLSPNGQLRVAS |
(restricted) Ga0233438_100329091 | 3300024255 | Seawater | ISRLSPRNLAVLARRCRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0228658_11670841 | 3300024297 | Seawater | NLAVLARRCRRYRQAISMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0228652_10517881 | 3300024326 | Seawater | RNLAVLARRFRRYRQAVPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0209309_101840801 | 3300025881 | Pelagic Marine | QAEPMNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0209309_103747022 | 3300025881 | Pelagic Marine | LARRFMRYRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0209631_100123641 | 3300025890 | Pelagic Marine | ISRLSPRNLVVLARRFRRYRQAIPVNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0209425_102749871 | 3300025897 | Pelagic Marine | FWRYRQAIPVNYSSATRSTFLPFELEPLGFSSNGQLRVAS |
Ga0208390_10020951 | 3300026081 | Marine | ISRLSPRNLVVLARRFRRYRQAFPMNYSSATRSTFLPSKLEPLGFSLNGQLRVAS |
Ga0208390_10160001 | 3300026081 | Marine | RRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS |
Ga0209709_102385421 | 3300027779 | Marine | ARRCRSYRQAYPINYFSSTKLIFLPFKLEPLGFFLNGQLRVAS |
Ga0209090_102808541 | 3300027813 | Marine | LVVLARRCRRYRQAILMNYSSATRFIFLSFKLGPLGFSLNGQLTVAF |
Ga0315331_104735671 | 3300031774 | Seawater | ISRLSPRNLAVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0315331_109150942 | 3300031774 | Seawater | SPSNLVVLARRFRRYRQAIPVNYSSATRFTFLPFELEPLGFSPNGQLRVAS |
Ga0310343_105652761 | 3300031785 | Seawater | YRQAFPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0310343_107811131 | 3300031785 | Seawater | RRFRRYRRTCPINHFSATQLTFLPLELEPLGFSSLGQLRVAS |
Ga0315330_100195751 | 3300032047 | Seawater | RRYRQAIPMNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0315330_101266421 | 3300032047 | Seawater | SRLSPRNLVVLARRFRRYRQAFPMNYSSATRFTFLPFKLEPLGFSLIGQLRVAS |
Ga0315330_105644211 | 3300032047 | Seawater | RRFRRYRQAVPMNYSSATRFTFLPSELEPLGFSPNGQLRVAS |
Ga0315315_109315661 | 3300032073 | Seawater | RRFMRYRQAFPMDYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
Ga0315315_111515151 | 3300032073 | Seawater | VLARRCRRYRQAIPMNYSSATRFTFLPFKLEPLGFSLNGQLRVAS |
Ga0315315_112761961 | 3300032073 | Seawater | VLARRFRRYRQAVSVNYSSATRSTFLPFKLEPLGFSLNGQLRVAS |
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