NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F092178

Metagenome / Metatranscriptome Family F092178

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092178
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 44 residues
Representative Sequence MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Number of Associated Samples 90
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 91.35 %
% of genes near scaffold ends (potentially truncated) 94.39 %
% of genes from short scaffolds (< 2000 bps) 85.98 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.654 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.037 % of family members)
Environment Ontology (ENVO) Unclassified
(36.449 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(44.860 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.
1AF_2010_repII_A1DRAFT_100140281
2AF_2010_repII_A100DRAFT_11017282
3AF_2010_repII_A001DRAFT_101272582
4JGI11643J12802_109396773
5JGI11615J12901_106944402
6JGI24748J21848_10362551
7Ga0062589_1015346501
8Ga0066677_104466522
9Ga0066388_1042222902
10Ga0068869_1000127404
11Ga0070691_100408431
12Ga0070713_1000714552
13Ga0070704_1007665102
14Ga0066704_102654532
15Ga0066704_103829121
16Ga0066698_105676641
17Ga0066903_1000719971
18Ga0066903_1004233841
19Ga0066903_1027812511
20Ga0066903_1085563241
21Ga0066651_104733241
22Ga0066652_1001670882
23Ga0075432_104984871
24Ga0075370_107533372
25Ga0074055_117876722
26Ga0075425_1009713571
27Ga0075425_1016309431
28Ga0075435_1003290112
29Ga0075435_1015742552
30Ga0099829_101209911
31Ga0126380_115933941
32Ga0126384_109322571
33Ga0126384_116061391
34Ga0126379_102181525
35Ga0134122_127644672
36Ga0137392_106525641
37Ga0137383_110672731
38Ga0137369_111129071
39Ga0137390_109857131
40Ga0137390_110365672
41Ga0157302_101562821
42Ga0126375_112542792
43Ga0132257_1006709061
44Ga0132257_1023608932
45Ga0182041_110244512
46Ga0182032_100610264
47Ga0182032_106864752
48Ga0182034_108013742
49Ga0182034_109049882
50Ga0182038_107107771
51Ga0184605_103532071
52Ga0184634_104782322
53Ga0184617_11032901
54Ga0066667_108677202
55Ga0066667_108677212
56Ga0193704_10163801
57Ga0213878_100219922
58Ga0126371_105527382
59Ga0126371_130971982
60Ga0207682_101423472
61Ga0207700_100730413
62Ga0257171_10325761
63Ga0257178_10412621
64Ga0209805_14371912
65Ga0208988_10388202
66Ga0307303_101001971
67Ga0307302_101380042
68Ga0307310_100718612
69Ga0307304_103882081
70Ga0307501_101116652
71Ga0307498_100157822
72Ga0307499_102802241
73Ga0318516_100386311
74Ga0318571_100374761
75Ga0318571_102652571
76Ga0318573_104663572
77Ga0318515_100011761
78Ga0318515_101675472
79Ga0318555_104107821
80Ga0306917_101327241
81Ga0318502_108704031
82Ga0318537_101262022
83Ga0318535_100375552
84Ga0318554_102925601
85Ga0318521_101926841
86Ga0318547_102051462
87Ga0318523_105750811
88Ga0318497_103711561
89Ga0307473_106006601
90Ga0318564_100501261
91Ga0310917_102453141
92Ga0318511_101058542
93Ga0306919_110194771
94Ga0318520_101033442
95Ga0306923_116589171
96Ga0306921_105571541
97Ga0306921_108930691
98Ga0310916_104619302
99Ga0318530_100938562
100Ga0310906_109982052
101Ga0310911_105767341
102Ga0310911_108565672
103Ga0318559_103452362
104Ga0318504_105524902
105Ga0318518_100878372
106Ga0318577_101780401
107Ga0318540_101342182
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 48.65%    β-sheet: 0.00%    Coil/Unstructured: 51.35%
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Variant

51015202530354045MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARWPSSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
90.7%9.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Bulk Soil
Soil
Soil
Grasslands Soil
Soil
Forest Soil
Soil
Hardwood Forest Soil
Soil
Soil
Tropical Forest Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Corn, Switchgrass And Miscanthus Rhizosphere
Populus Endosphere
Populus Rhizosphere
Miscanthus Rhizosphere
2.8%8.4%5.6%6.5%7.5%28.0%2.8%10.3%4.7%3.7%4.7%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A1DRAFT_1001402813300000597Forest SoilMQARERDGAGTAAPSLEQSFFRSAVTTLQAKSLAIVGASERARWPSEIFRNLR
AF_2010_repII_A100DRAFT_110172823300000655Forest SoilMQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASER
AF_2010_repII_A001DRAFT_1012725823300000793Forest SoilMQARERDGAGTAAPSLEQSFFRSAVTTLQAKSLAIVGASERARWPSEIFRN
JGI11643J12802_1093967733300000890SoilMQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGA
JGI11615J12901_1069444023300000953SoilMQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLH
JGI24748J21848_103625513300002074Corn, Switchgrass And Miscanthus RhizosphereMQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0062589_10153465013300004156SoilMQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0066677_1044665223300005171SoilMQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWP
Ga0066388_10422229023300005332Tropical Forest SoilMQAQERDVPVTRTAAATESLFRSAVSTLTANSLAIVGASERARWPSEIFKN
Ga0068869_10001274043300005334Miscanthus RhizosphereMQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERAR
Ga0070691_1004084313300005341Corn, Switchgrass And Miscanthus RhizosphereMQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERA
Ga0070713_10007145523300005436Corn, Switchgrass And Miscanthus RhizosphereMQAWERDVPGSDAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR*
Ga0070704_10076651023300005549Corn, Switchgrass And Miscanthus RhizosphereMQAQERDVPGTGAATASESLFRSAVSTLQAKSIAIVGASERARWPSEIFK
Ga0066704_1026545323300005557SoilMQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWPSGIFKNLREFGYP
Ga0066704_1038291213300005557SoilMQARERDVASTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIF
Ga0066698_1056766413300005558SoilMQGQERNAPVTETPTATASLFRSAVSTLTAKSLAI
Ga0066903_10007199713300005764Tropical Forest SoilMQGQERNVPVTETPTATESLFRSAVSTLTAKSLAI
Ga0066903_10042338413300005764Tropical Forest SoilMQAQERDLSGTEAATATESLFRSAVSTLTAKSLAI
Ga0066903_10278125113300005764Tropical Forest SoilMQAQERNVPVTETASATESLFRSAVSTLTAKSLAIVGASERARWPSEIFKNL
Ga0066903_10855632413300005764Tropical Forest SoilMQAQERDVPVTGIATATESLFRSAVSTLTAKSLAI
Ga0066651_1047332413300006031SoilMHSLELDGSVAGAPKAPDLFRSAVSTLQARSLAIVGASERARW
Ga0066652_10016708823300006046SoilMQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIF
Ga0075432_1049848713300006058Populus RhizosphereMQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLREFGYP
Ga0075370_1075333723300006353Populus EndosphereMQAWERDVPGSGVAKAEQSLFRSAVSTLQAKSLAIVGASER
Ga0074055_1178767223300006573SoilMQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSE
Ga0075425_10097135713300006854Populus RhizosphereMQARERDVAGTQAASVSGSLFRSVATTLAAKSLAIVGASER
Ga0075425_10163094313300006854Populus RhizosphereMQGQERNVPVRETPTATASLFRSAVSTLTAKSLAIIGASERA
Ga0075435_10032901123300007076Populus RhizosphereMQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLR
Ga0075435_10157425523300007076Populus RhizosphereMQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLR
Ga0099829_1012099113300009038Vadose Zone SoilMQAWEREVPGPGGAKAKKTLFRSAVSTLQAKSLAIVGVSERARWPS*
Ga0126380_1159339413300010043Tropical Forest SoilMQARERDVAGTQAASVSGSLFRSVATTLAGKSLAIVGASERARW
Ga0126384_1093225713300010046Tropical Forest SoilMQAQERNVPVIETAIATETLFRSAVSTLTAKSLAIVGAS
Ga0126384_1160613913300010046Tropical Forest SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGA
Ga0126379_1021815253300010366Tropical Forest SoilMQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIV
Ga0134122_1276446723300010400Terrestrial SoilMTTDDKGLFRSAVSTLQPKSLAIVGASERAKWPSEIYKNLR
Ga0137392_1065256413300011269Vadose Zone SoilVPGAGAATADNNTLFRQAASTLQAKSLAIVGASERARWPSEIYRNLR
Ga0137383_1106727313300012199Vadose Zone SoilMQARERDVAGTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNLRE
Ga0137369_1111290713300012355Vadose Zone SoilMQARERDLSGTEAASAAKSLFRSAVSTLQAKSLAI
Ga0137390_1098571313300012363Vadose Zone SoilMTALVKTRDSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0137390_1103656723300012363Vadose Zone SoilVPGAGAATADNNTLFRQAASTLQAKSLAIVGASERARWPSEIYR
Ga0157302_1015628213300012915SoilMQAWERDVPGSGAAKADHSLFRSAVSTLQAKSLAIVGASERARWPSE
Ga0126375_1125427923300012948Tropical Forest SoilMERDASGTGAAKAETNLFRSAVSTLQAKSVAIVGASERARWPSDIY
Ga0132257_10067090613300015373Arabidopsis RhizosphereMQAQERNVPVTEIATATESLFRSAVSTLTAKSLAI
Ga0132257_10236089323300015373Arabidopsis RhizosphereMHSGELEASEAGVVKTGEGLFRSVVSTLQAKSLAIVGASERARWPS
Ga0182041_1102445123300016294SoilMQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPSEIF
Ga0182032_1006102643300016357SoilMQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVGASER
Ga0182032_1068647523300016357SoilMQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWP
Ga0182034_1080137423300016371SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARWPS
Ga0182034_1090498823300016371SoilMQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIF
Ga0182038_1071077713300016445SoilMQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVGASERARWP
Ga0184605_1035320713300018027Groundwater SedimentMQAWERDVPGMSAAKAEQSLFRSAVSTLQARSLAIVGASERARWPS
Ga0184634_1047823223300018031Groundwater SedimentMQAWERDVPGMSAAKAEQGLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0184617_110329013300018066Groundwater SedimentMQAWERDVLGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0066667_1086772023300018433Grasslands SoilMQARERDVASTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNL
Ga0066667_1086772123300018433Grasslands SoilMQARERDVAGTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNL
Ga0193704_101638013300019867SoilMQAWERDVPGMSAAKTEQSLFRSAVSTLQAKSLAIVGASER
Ga0213878_1002199223300021444Bulk SoilMQGQERNVPVTETTAATESLFRSAVSTLTAKSLAIVGASERARWPSEIF
Ga0126371_1055273823300021560Tropical Forest SoilMQAQERDLPGTEAAVAGKSLFRSAVSTLTAKSLAIV
Ga0126371_1309719823300021560Tropical Forest SoilMQAQERDLPGTETAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0207682_1014234723300025893Miscanthus RhizosphereMQVWERDVPGSGAAKADHSLFRSAVSTLQATSLAIV
Ga0207700_1007304133300025928Corn, Switchgrass And Miscanthus RhizosphereMQAWERDVPGSDAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0257171_103257613300026377SoilMQARERDVAGTQAASASQGLFRSVATTLAAKSLAIVGASERARW
Ga0257178_104126213300026446SoilMQGQERNVPVTETATATESLFRSAVSTLTAKSLAIIGASERARWPSEIFK
Ga0209805_143719123300026542SoilMQAWERDGAQTGAAKADPNLFRSAVSTLRPASLAIVGASERARWPSEIFSNL
Ga0208988_103882023300027633Forest SoilVSGKSATIENNLFRSAVSALQAKSIAIVGASERAR
Ga0307303_1010019713300028713SoilMQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERA
Ga0307302_1013800423300028814SoilMQAWERDVPGMSAAKAEQSLFRSAVSTLQAESLAIV
Ga0307310_1007186123300028824SoilMQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIV
Ga0307304_1038820813300028885SoilMQAWERDVPGSGEAKADQSLFRSVVSTLQAKSLAIVGASERARWP
Ga0307501_1011166523300031152SoilMQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0307498_1001578223300031170SoilMQAWERDVPGMSAAKAEQGLFRSAISTLQAKSLAIVGASERARWPSE
Ga0307499_1028022413300031184SoilMQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERARWPS
Ga0318516_1003863113300031543SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVG
Ga0318571_1003747613300031549SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASE
Ga0318571_1026525713300031549SoilMHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASERARWPCEIFS
Ga0318573_1046635723300031564SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARW
Ga0318515_1000117613300031572SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIV
Ga0318515_1016754723300031572SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0318555_1041078213300031640SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAI
Ga0306917_1013272413300031719SoilMQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPS
Ga0318502_1087040313300031747SoilMQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0318537_1012620223300031763SoilMQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVGA
Ga0318535_1003755523300031764SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAQSLAIIGASERARWPSEIFKNLREFGY
Ga0318554_1029256013300031765SoilVGVTDVVKAGENLFRSAVSTLQPASLAIVGASERARWPSEIF
Ga0318521_1019268413300031770SoilMQGQERNVPVTETAAATESLFRSAVSTLTAKSLAIIGASERA
Ga0318547_1020514623300031781SoilMQAQERDLLGTEAAIAGENLFRSAASTLTAKSLAIVGASER
Ga0318523_1057508113300031798SoilMHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASERARWPCEIFSNLREF
Ga0318497_1037115613300031805SoilMQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVG
Ga0307473_1060066013300031820Hardwood Forest SoilMQGQERNVPVTETPTATESLFRSAVSTLTAKSLAIIGASE
Ga0318564_1005012613300031831SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARW
Ga0310917_1024531413300031833SoilMQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASE
Ga0318511_1010585423300031845SoilMQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIFK
Ga0306919_1101947713300031879SoilMQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIFKN
Ga0318520_1010334423300031897SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAQSLAIIGASERARW
Ga0306923_1165891713300031910SoilMQAQERDLPGTEAAVAGQNLFRSAVSTLTAKSLAIV
Ga0306921_1055715413300031912SoilMQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVG
Ga0306921_1089306913300031912SoilMQARERDVPVTGTATATESLFRSAVSTLTAKSLAI
Ga0310916_1046193023300031942SoilMQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPSEIFKN
Ga0318530_1009385623300031959SoilMQAQERDLLGTEAAIAGENLFRSAASTLTAKSLAIVGASERARW
Ga0310906_1099820523300032013SoilMQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARW
Ga0310911_1057673413300032035SoilMHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASER
Ga0310911_1085656723300032035SoilMQAQERDVLVTGTATATESLFRSAVSTLTAKSLAI
Ga0318559_1034523623300032039SoilMQAQERDLSGTEAATATESLFRSAVSTLTAKSLAIVGA
Ga0318504_1055249023300032063SoilMDVGVTDVVKAGDNLFRSAVSTLQPASLAIVGASERARWPS
Ga0318518_1008783723300032090SoilMQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASERARW
Ga0318577_1017804013300032091SoilMQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARWPSEI
Ga0318540_1013421823300032094SoilMQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASE


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