Metagenome / Metatranscriptome Family F092178

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092178
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Number of Associated Samples	90
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.35 %
% of genes near scaffold ends (potentially truncated)	94.39 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.654 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.037 % of family members)
Environment Ontology (ENVO)	Unclassified (36.449 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.860 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.65% β-sheet: 0.00% Coil/Unstructured: 51.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07331	TctB	66.36
PF01970	TctA	7.48
PF06155	GBBH-like_N	2.80
PF12307	DUF3631	1.87
PF13607	Succ_CoA_lig	1.87
PF11150	DUF2927	0.93
PF03459	TOBE	0.93
PF13643	DUF4145	0.93
PF00589	Phage_integrase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1784	TctA family transporter	General function prediction only [R]	7.48
COG3333	TctA family transporter	General function prediction only [R]	7.48
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	2.80

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.65 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.05 %
Unclassified	root	N/A	9.35 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.49 %
Unclassified	root	N/A	9.35 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	52.34 %
Unclassified	root	N/A	9.35 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.74 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.34 %
Unclassified	root	N/A	9.35 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
unclassified Chromatiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.34 %
Unclassified	root	N/A	9.35 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.34 %
Unclassified	root	N/A	9.35 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	52.34 %
Unclassified	root	N/A	9.35 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Chromatiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10014028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2202	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1101728	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10127258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300000890\|JGI11643J12802_10939677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300000953\|JGI11615J12901_10694440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300002074\|JGI24748J21848_1036255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300004156\|Ga0062589_101534650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300005171\|Ga0066677_10446652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300005332\|Ga0066388_104222290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300005334\|Ga0068869_100012740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5561	Open in IMG/M
3300005341\|Ga0070691_10040843	Not Available	2192	Open in IMG/M
3300005436\|Ga0070713_100071455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2932	Open in IMG/M
3300005549\|Ga0070704_100766510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300005557\|Ga0066704_10265453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1165	Open in IMG/M
3300005557\|Ga0066704_10382912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	938	Open in IMG/M
3300005558\|Ga0066698_10567664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	769	Open in IMG/M
3300005764\|Ga0066903_100071997	All Organisms → cellular organisms → Bacteria	4432	Open in IMG/M
3300005764\|Ga0066903_100423384	Not Available	2206	Open in IMG/M
3300005764\|Ga0066903_102781251	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300005764\|Ga0066903_108556324	Not Available	521	Open in IMG/M
3300006031\|Ga0066651_10473324	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300006046\|Ga0066652_100167088	All Organisms → cellular organisms → Bacteria → Proteobacteria	1862	Open in IMG/M
3300006058\|Ga0075432_10498487	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300006353\|Ga0075370_10753337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300006573\|Ga0074055_11787672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300006854\|Ga0075425_100971357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	970	Open in IMG/M
3300006854\|Ga0075425_101630943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	726	Open in IMG/M
3300007076\|Ga0075435_100329011	All Organisms → cellular organisms → Bacteria → Proteobacteria	1308	Open in IMG/M
3300007076\|Ga0075435_101574255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	576	Open in IMG/M
3300009038\|Ga0099829_10120991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2061	Open in IMG/M
3300010043\|Ga0126380_11593394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300010046\|Ga0126384_10932257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	786	Open in IMG/M
3300010046\|Ga0126384_11606139	Not Available	612	Open in IMG/M
3300010366\|Ga0126379_10218152	All Organisms → cellular organisms → Bacteria	1850	Open in IMG/M
3300010400\|Ga0134122_12764467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300011269\|Ga0137392_10652564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300012199\|Ga0137383_11067273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	586	Open in IMG/M
3300012355\|Ga0137369_11112907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	515	Open in IMG/M
3300012363\|Ga0137390_11036567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300012915\|Ga0157302_10156282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	780	Open in IMG/M
3300012948\|Ga0126375_11254279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300015373\|Ga0132257_100670906	All Organisms → cellular organisms → Bacteria → Proteobacteria	1286	Open in IMG/M
3300015373\|Ga0132257_102360893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	690	Open in IMG/M
3300016294\|Ga0182041_11024451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	747	Open in IMG/M
3300016357\|Ga0182032_10061026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2499	Open in IMG/M
3300016357\|Ga0182032_10686475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300016371\|Ga0182034_10801374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	806	Open in IMG/M
3300016371\|Ga0182034_10904988	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	759	Open in IMG/M
3300016445\|Ga0182038_10710777	All Organisms → cellular organisms → Bacteria	876	Open in IMG/M
3300018027\|Ga0184605_10353207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	664	Open in IMG/M
3300018031\|Ga0184634_10478232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300018066\|Ga0184617_1103290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300018433\|Ga0066667_10867720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300018433\|Ga0066667_10867721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300019867\|Ga0193704_1016380	All Organisms → cellular organisms → Bacteria → Proteobacteria	1504	Open in IMG/M
3300021444\|Ga0213878_10021992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2355	Open in IMG/M
3300021560\|Ga0126371_10552738	All Organisms → cellular organisms → Bacteria → Proteobacteria	1300	Open in IMG/M
3300021560\|Ga0126371_13097198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300025893\|Ga0207682_10142347	Not Available	1077	Open in IMG/M
3300025928\|Ga0207700_10073041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2648	Open in IMG/M
3300026377\|Ga0257171_1032576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300026446\|Ga0257178_1041262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300026542\|Ga0209805_1437191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	508	Open in IMG/M
3300027633\|Ga0208988_1038820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → unclassified Chromatiales → Chromatiales bacterium	1224	Open in IMG/M
3300028713\|Ga0307303_10100197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	663	Open in IMG/M
3300028814\|Ga0307302_10138004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1177	Open in IMG/M
3300028824\|Ga0307310_10071861	All Organisms → cellular organisms → Bacteria → Proteobacteria	1488	Open in IMG/M
3300028885\|Ga0307304_10388208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300031152\|Ga0307501_10111665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	703	Open in IMG/M
3300031170\|Ga0307498_10015782	All Organisms → cellular organisms → Bacteria → Proteobacteria	1626	Open in IMG/M
3300031184\|Ga0307499_10280224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300031543\|Ga0318516_10038631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2555	Open in IMG/M
3300031549\|Ga0318571_10037476	All Organisms → cellular organisms → Bacteria → Proteobacteria	1386	Open in IMG/M
3300031549\|Ga0318571_10265257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300031564\|Ga0318573_10466357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300031572\|Ga0318515_10001176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9002	Open in IMG/M
3300031572\|Ga0318515_10167547	All Organisms → cellular organisms → Bacteria → Proteobacteria	1173	Open in IMG/M
3300031640\|Ga0318555_10410782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	733	Open in IMG/M
3300031719\|Ga0306917_10132724	All Organisms → cellular organisms → Bacteria → Proteobacteria	1828	Open in IMG/M
3300031747\|Ga0318502_10870403	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300031763\|Ga0318537_10126202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300031764\|Ga0318535_10037555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1973	Open in IMG/M
3300031770\|Ga0318521_10192684	All Organisms → cellular organisms → Bacteria → Proteobacteria	1174	Open in IMG/M
3300031781\|Ga0318547_10205146	All Organisms → cellular organisms → Bacteria → Proteobacteria	1178	Open in IMG/M
3300031798\|Ga0318523_10575081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300031805\|Ga0318497_10371156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300031820\|Ga0307473_10600660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300031831\|Ga0318564_10050126	All Organisms → cellular organisms → Bacteria → Proteobacteria	1816	Open in IMG/M
3300031833\|Ga0310917_10245314	All Organisms → cellular organisms → Bacteria → Proteobacteria	1204	Open in IMG/M
3300031845\|Ga0318511_10105854	All Organisms → cellular organisms → Bacteria → Proteobacteria	1200	Open in IMG/M
3300031879\|Ga0306919_11019477	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	632	Open in IMG/M
3300031897\|Ga0318520_10103344	All Organisms → cellular organisms → Bacteria → Proteobacteria	1601	Open in IMG/M
3300031910\|Ga0306923_11658917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	662	Open in IMG/M
3300031912\|Ga0306921_10557154	All Organisms → cellular organisms → Bacteria → Proteobacteria	1329	Open in IMG/M
3300031912\|Ga0306921_10893069	Not Available	1009	Open in IMG/M
3300031942\|Ga0310916_10461930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1081	Open in IMG/M
3300031959\|Ga0318530_10093856	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186	Open in IMG/M
3300032013\|Ga0310906_10998205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300032035\|Ga0310911_10576734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300032035\|Ga0310911_10856567	Not Available	525	Open in IMG/M
3300032039\|Ga0318559_10345236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	692	Open in IMG/M
3300032090\|Ga0318518_10087837	All Organisms → cellular organisms → Bacteria → Proteobacteria	1538	Open in IMG/M
3300032091\|Ga0318577_10178040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1015	Open in IMG/M
3300032094\|Ga0318540_10134218	All Organisms → cellular organisms → Bacteria → Proteobacteria	1180	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.72%
Host-Associated	Host-Associated	10.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.92%
Plants	Host-Associated → Plants	10.28%
Aquatic	Environmental → Aquatic	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Sediment	Environmental → Aquatic → Sediment	2.80%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.64%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.36%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026377	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100140281	3300000597	Forest Soil	MQARERDGAGTAAPSLEQSFFRSAVTTLQAKSLAIVGASERARWPSEIFRNLR
AF_2010_repII_A100DRAFT_11017282	3300000655	Forest Soil	MQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASER
AF_2010_repII_A001DRAFT_101272582	3300000793	Forest Soil	MQARERDGAGTAAPSLEQSFFRSAVTTLQAKSLAIVGASERARWPSEIFRN
JGI11643J12802_109396773	3300000890	Soil	MQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGA
JGI11615J12901_106944402	3300000953	Soil	MQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLH
JGI24748J21848_10362551	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	MQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0062589_1015346501	3300004156	Soil	MQAWERNVRGTGVARAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0066677_104466522	3300005171	Soil	MQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWP
Ga0066388_1042222902	3300005332	Tropical Forest Soil	MQAQERDVPVTRTAAATESLFRSAVSTLTANSLAIVGASERARWPSEIFKN
Ga0068869_1000127404	3300005334	Miscanthus Rhizosphere	MQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERAR
Ga0070691_100408431	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERA
Ga0070713_1000714552	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MQAWERDVPGSDAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR*
Ga0070704_1007665102	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MQAQERDVPGTGAATASESLFRSAVSTLQAKSIAIVGASERARWPSEIFK
Ga0066704_102654532	3300005557	Soil	MQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWPSGIFKNLREFGYP
Ga0066704_103829121	3300005557	Soil	MQARERDVASTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIF
Ga0066698_105676641	3300005558	Soil	MQGQERNAPVTETPTATASLFRSAVSTLTAKSLAI
Ga0066903_1000719971	3300005764	Tropical Forest Soil	MQGQERNVPVTETPTATESLFRSAVSTLTAKSLAI
Ga0066903_1004233841	3300005764	Tropical Forest Soil	MQAQERDLSGTEAATATESLFRSAVSTLTAKSLAI
Ga0066903_1027812511	3300005764	Tropical Forest Soil	MQAQERNVPVTETASATESLFRSAVSTLTAKSLAIVGASERARWPSEIFKNL
Ga0066903_1085563241	3300005764	Tropical Forest Soil	MQAQERDVPVTGIATATESLFRSAVSTLTAKSLAI
Ga0066651_104733241	3300006031	Soil	MHSLELDGSVAGAPKAPDLFRSAVSTLQARSLAIVGASERARW
Ga0066652_1001670882	3300006046	Soil	MQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIF
Ga0075432_104984871	3300006058	Populus Rhizosphere	MQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLREFGYP
Ga0075370_107533372	3300006353	Populus Endosphere	MQAWERDVPGSGVAKAEQSLFRSAVSTLQAKSLAIVGASER
Ga0074055_117876722	3300006573	Soil	MQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSE
Ga0075425_1009713571	3300006854	Populus Rhizosphere	MQARERDVAGTQAASVSGSLFRSVATTLAAKSLAIVGASER
Ga0075425_1016309431	3300006854	Populus Rhizosphere	MQGQERNVPVRETPTATASLFRSAVSTLTAKSLAIIGASERA
Ga0075435_1003290112	3300007076	Populus Rhizosphere	MQGQERNVPVTETATATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLR
Ga0075435_1015742552	3300007076	Populus Rhizosphere	MQGQERNAPVTETPTATASLFRSAVSTLTAKSLAIIGASERARWPSEIFKNLR
Ga0099829_101209911	3300009038	Vadose Zone Soil	MQAWEREVPGPGGAKAKKTLFRSAVSTLQAKSLAIVGVSERARWPS*
Ga0126380_115933941	3300010043	Tropical Forest Soil	MQARERDVAGTQAASVSGSLFRSVATTLAGKSLAIVGASERARW
Ga0126384_109322571	3300010046	Tropical Forest Soil	MQAQERNVPVIETAIATETLFRSAVSTLTAKSLAIVGAS
Ga0126384_116061391	3300010046	Tropical Forest Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGA
Ga0126379_102181525	3300010366	Tropical Forest Soil	MQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIV
Ga0134122_127644672	3300010400	Terrestrial Soil	MTTDDKGLFRSAVSTLQPKSLAIVGASERAKWPSEIYKNLR
Ga0137392_106525641	3300011269	Vadose Zone Soil	VPGAGAATADNNTLFRQAASTLQAKSLAIVGASERARWPSEIYRNLR
Ga0137383_110672731	3300012199	Vadose Zone Soil	MQARERDVAGTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNLRE
Ga0137369_111129071	3300012355	Vadose Zone Soil	MQARERDLSGTEAASAAKSLFRSAVSTLQAKSLAI
Ga0137390_109857131	3300012363	Vadose Zone Soil	MTALVKTRDSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0137390_110365672	3300012363	Vadose Zone Soil	VPGAGAATADNNTLFRQAASTLQAKSLAIVGASERARWPSEIYR
Ga0157302_101562821	3300012915	Soil	MQAWERDVPGSGAAKADHSLFRSAVSTLQAKSLAIVGASERARWPSE
Ga0126375_112542792	3300012948	Tropical Forest Soil	MERDASGTGAAKAETNLFRSAVSTLQAKSVAIVGASERARWPSDIY
Ga0132257_1006709061	3300015373	Arabidopsis Rhizosphere	MQAQERNVPVTEIATATESLFRSAVSTLTAKSLAI
Ga0132257_1023608932	3300015373	Arabidopsis Rhizosphere	MHSGELEASEAGVVKTGEGLFRSVVSTLQAKSLAIVGASERARWPS
Ga0182041_110244512	3300016294	Soil	MQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPSEIF
Ga0182032_100610264	3300016357	Soil	MQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVGASER
Ga0182032_106864752	3300016357	Soil	MQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWP
Ga0182034_108013742	3300016371	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARWPS
Ga0182034_109049882	3300016371	Soil	MQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIF
Ga0182038_107107771	3300016445	Soil	MQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVGASERARWP
Ga0184605_103532071	3300018027	Groundwater Sediment	MQAWERDVPGMSAAKAEQSLFRSAVSTLQARSLAIVGASERARWPS
Ga0184634_104782322	3300018031	Groundwater Sediment	MQAWERDVPGMSAAKAEQGLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0184617_11032901	3300018066	Groundwater Sediment	MQAWERDVLGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNL
Ga0066667_108677202	3300018433	Grasslands Soil	MQARERDVASTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNL
Ga0066667_108677212	3300018433	Grasslands Soil	MQARERDVAGTQATSASLFRSVATTLAGKSLAIVGASERARWPSEIFRNL
Ga0193704_10163801	3300019867	Soil	MQAWERDVPGMSAAKTEQSLFRSAVSTLQAKSLAIVGASER
Ga0213878_100219922	3300021444	Bulk Soil	MQGQERNVPVTETTAATESLFRSAVSTLTAKSLAIVGASERARWPSEIF
Ga0126371_105527382	3300021560	Tropical Forest Soil	MQAQERDLPGTEAAVAGKSLFRSAVSTLTAKSLAIV
Ga0126371_130971982	3300021560	Tropical Forest Soil	MQAQERDLPGTETAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0207682_101423472	3300025893	Miscanthus Rhizosphere	MQVWERDVPGSGAAKADHSLFRSAVSTLQATSLAIV
Ga0207700_100730413	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MQAWERDVPGSDAAKADQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0257171_10325761	3300026377	Soil	MQARERDVAGTQAASASQGLFRSVATTLAAKSLAIVGASERARW
Ga0257178_10412621	3300026446	Soil	MQGQERNVPVTETATATESLFRSAVSTLTAKSLAIIGASERARWPSEIFK
Ga0209805_14371912	3300026542	Soil	MQAWERDGAQTGAAKADPNLFRSAVSTLRPASLAIVGASERARWPSEIFSNL
Ga0208988_10388202	3300027633	Forest Soil	VSGKSATIENNLFRSAVSALQAKSIAIVGASERAR
Ga0307303_101001971	3300028713	Soil	MQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERA
Ga0307302_101380042	3300028814	Soil	MQAWERDVPGMSAAKAEQSLFRSAVSTLQAESLAIV
Ga0307310_100718612	3300028824	Soil	MQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIV
Ga0307304_103882081	3300028885	Soil	MQAWERDVPGSGEAKADQSLFRSVVSTLQAKSLAIVGASERARWP
Ga0307501_101116652	3300031152	Soil	MQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERARWPSEIFKNLR
Ga0307498_100157822	3300031170	Soil	MQAWERDVPGMSAAKAEQGLFRSAISTLQAKSLAIVGASERARWPSE
Ga0307499_102802241	3300031184	Soil	MQAWERDVPGMSAAKAEQSLFRSAVSTLQAKSLAIVGASERARWPS
Ga0318516_100386311	3300031543	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVG
Ga0318571_100374761	3300031549	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASE
Ga0318571_102652571	3300031549	Soil	MHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASERARWPCEIFS
Ga0318573_104663572	3300031564	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARW
Ga0318515_100011761	3300031572	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIV
Ga0318515_101675472	3300031572	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0318555_104107821	3300031640	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAI
Ga0306917_101327241	3300031719	Soil	MQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPS
Ga0318502_108704031	3300031747	Soil	MQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPS
Ga0318537_101262022	3300031763	Soil	MQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVGA
Ga0318535_100375552	3300031764	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAQSLAIIGASERARWPSEIFKNLREFGY
Ga0318554_102925601	3300031765	Soil	VGVTDVVKAGENLFRSAVSTLQPASLAIVGASERARWPSEIF
Ga0318521_101926841	3300031770	Soil	MQGQERNVPVTETAAATESLFRSAVSTLTAKSLAIIGASERA
Ga0318547_102051462	3300031781	Soil	MQAQERDLLGTEAAIAGENLFRSAASTLTAKSLAIVGASER
Ga0318523_105750811	3300031798	Soil	MHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASERARWPCEIFSNLREF
Ga0318497_103711561	3300031805	Soil	MQAQERDVLVTGTATATESLFRSAVSTLTAKSLAIVG
Ga0307473_106006601	3300031820	Hardwood Forest Soil	MQGQERNVPVTETPTATESLFRSAVSTLTAKSLAIIGASE
Ga0318564_100501261	3300031831	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASERARW
Ga0310917_102453141	3300031833	Soil	MQAQERDLPGTEAAIAGESLFRSAVSTLTAKSLAIVGASE
Ga0318511_101058542	3300031845	Soil	MQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIFK
Ga0306919_110194771	3300031879	Soil	MQAQERDLPGTEAAIAGENLFRSAASTLTAKSLAIVGASERARWPSEIFKN
Ga0318520_101033442	3300031897	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAQSLAIIGASERARW
Ga0306923_116589171	3300031910	Soil	MQAQERDLPGTEAAVAGQNLFRSAVSTLTAKSLAIV
Ga0306921_105571541	3300031912	Soil	MQAQKRDVLVTGTATATESLFRSAVSTLTAKSLAIVG
Ga0306921_108930691	3300031912	Soil	MQARERDVPVTGTATATESLFRSAVSTLTAKSLAI
Ga0310916_104619302	3300031942	Soil	MQARERDVPVTGTATATESLFRSAVSTLTAKSLAIVGASERARWPSEIFKN
Ga0318530_100938562	3300031959	Soil	MQAQERDLLGTEAAIAGENLFRSAASTLTAKSLAIVGASERARW
Ga0310906_109982052	3300032013	Soil	MQAWERDVPGSGAAKADQSLFRSAVSTLQAKSLAIVGASERARW
Ga0310911_105767341	3300032035	Soil	MHAWEREGAQSGPAKADANLFRSAVSTLKPASLAIVGASER
Ga0310911_108565672	3300032035	Soil	MQAQERDVLVTGTATATESLFRSAVSTLTAKSLAI
Ga0318559_103452362	3300032039	Soil	MQAQERDLSGTEAATATESLFRSAVSTLTAKSLAIVGA
Ga0318504_105524902	3300032063	Soil	MDVGVTDVVKAGDNLFRSAVSTLQPASLAIVGASERARWPS
Ga0318518_100878372	3300032090	Soil	MQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASERARW
Ga0318577_101780401	3300032091	Soil	MQAQERDLPGTEAAITGKSLFRSAVSTLTAKSLAIVGASERARWPSEI
Ga0318540_101342182	3300032094	Soil	MQARERDGAGTAAPSLEQSLFRSAVTTLQAKSLAIVGASE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092178

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences