Metagenome Family F092148

Overview

Basic Information

• Family ID: F092148
• Family Type: Metagenome
• Number of Sequences: 107
• Average Sequence Length: 53 residues
• Representative Sequence: MNNNKKREDLSDKIKTALDKAIKNVIAETKAKNSYLVIADKKGNIKKIPAKDL
• Number of Associated Samples: 102
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 7.48 %
• % of genes near scaffold ends (potentially truncated): 12.15 %
• % of genes from short scaffolds (< 2000 bps): 71.96 %
• Associated GOLD sequencing projects: 88
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (79.439 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere (7.477 % of family members)
• Environment Ontology (ENVO): Unclassified (34.579 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (26.168 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 29.63%
  β-sheet: 12.35%
  Coil/Unstructured: 58.02%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF06414	Zeta_toxin	25.23
PF02780	Transketolase_C	12.15
PF00155	Aminotran_1_2	3.74
PF01261	AP_endonuc_2	3.74
PF00294	PfkB	1.87
PF07969	Amidohydro_3	1.87
PF12679	ABC2_membrane_2	1.87
PF13715	CarbopepD_reg_2	1.87
PF04020	Phage_holin_4_2	0.93
PF13366	PDDEXK_3	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0020	Undecaprenyl pyrophosphate synthase	Lipid transport and metabolism [I]	0.93
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.93
COG0746	Molybdopterin-guanine dinucleotide biosynthesis protein A	Coenzyme transport and metabolism [H]	0.93
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.93
COG1207	Bifunctional protein GlmU, N-acetylglucosamine-1-phosphate-uridyltransferase/glucosamine-1-phosphate-acetyltransferase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	Lipid transport and metabolism [I]	0.93
COG1884	Methylmalonyl-CoA mutase, N-terminal domain/subunit	Lipid transport and metabolism [I]	0.93
COG1950	Uncharacterized membrane protein YvlD, DUF360 family	Function unknown [S]	0.93
COG2068	CTP:molybdopterin cytidylyltransferase MocA	Coenzyme transport and metabolism [H]	0.93
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.37 %
Unclassified	root	N/A	19.63 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.37 %
Unclassified	root	N/A	19.63 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.44 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %
Unclassified	root	N/A	19.63 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	71.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
Unclassified	root	N/A	19.63 %

Level 5

Name	Rank	Taxonomy	Distribution
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.93 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	71.03 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	19.63 %

Level 6

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	71.03 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Unclassified	root	N/A	19.63 %

Level 7

Name	Rank	Taxonomy	Distribution
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	11.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sphingobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia	3.74 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.93 %
Unclassified	root	N/A	19.63 %

Level 8

Name	Rank	Taxonomy	Distribution
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	11.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sphingobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales	3.74 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.93 %
Unclassified	root	N/A	19.63 %

Level 9

Name	Rank	Taxonomy	Distribution
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	11.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.93 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.93 %
Unclassified	root	N/A	19.63 %

Level 10

Name	Rank	Taxonomy	Distribution
Ferruginibacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sediminibacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium	1.87 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.93 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.93 %
Unclassified	root	N/A	19.63 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	1.87 %

Level 11

Name	Rank	Taxonomy	Distribution
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1.87 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sediminibacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium	1.87 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.93 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.93 %
Unclassified	root	N/A	19.63 %
unclassified Ferruginibacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter	0.93 %

Level 12

Name	Rank	Taxonomy	Distribution
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	1.87 %
Ferruginibacter sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Ferruginibacter → unclassified Ferruginibacter → Ferruginibacter sp.	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Sediminibacterium	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Sediminibacterium	1.87 %
Sphingobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Sphingobacteriia → Sphingobacteriales → Sphingobacteriaceae	0.93 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	0.93 %
Unclassified	root	N/A	19.63 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300031150|Ga0255311_1077014	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	712
(restricted) 3300031197|Ga0255310_10018912	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1774
3300002100|JGI24809J26612_1003611	All Organisms → cellular organisms → Bacteria	4622
3300004778|Ga0062383_10279974	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	795
3300004778|Ga0062383_10573813	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	570
3300005205|Ga0068999_10094610	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	587
3300005328|Ga0070676_10596196	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	796
3300005331|Ga0070670_100050547	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	3572
3300005334|Ga0068869_100138127	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1879
3300005338|Ga0068868_100266772	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1445

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	10.28%
Environmental	Environmental	62.62%
Host-Associated	Host-Associated	27.10%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	30.84%
Plants	Host-Associated → Plants	27.10%
Terrestrial	Environmental → Terrestrial	31.78%
Wastewater	Engineered → Wastewater	10.28%

Category

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge	4.67%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	5.61%
Cave	Environmental → Terrestrial → Cave	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.93%
Freshwater	Environmental → Aquatic → Freshwater	27.10%
Marine	Environmental → Aquatic → Marine	1.87%
Peat	Environmental → Terrestrial → Peat	0.93%
Peat Moss	Host-Associated → Plants → Peat Moss	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.95%
Roots	Host-Associated → Plants → Roots	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%
Soil	Environmental → Terrestrial → Soil	28.04%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.35%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.61%
Ice	Environmental → Aquatic → Freshwater → Ice	11.21%
Lake	Environmental → Aquatic → Freshwater → Lake	2.80%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	1.87%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	7.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	10.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.82%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.67%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.61%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%

Subtype

Habitat	Taxonomy	Distribution
Acid Mine Drainage	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.87%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	2.80%
Glacier	Environmental → Aquatic → Freshwater → Ice → Glacier	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.35%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	5.61%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	5.61%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.67%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	4.67%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%
Active Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Active Sludge	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.80%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	5.61%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.87%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	2.80%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.87%
Glacier Valley	Environmental → Aquatic → Freshwater → Ice → Glacier → Glacier Valley	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	4.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.93%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	6.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Sand	3.74%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Sediment	Environmental → Aquatic → Freshwater → Groundwater → Acid Mine Drainage → Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	7.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	1.87%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	5.61%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300002100	Soil microbial communities from Manhattan, Kansas, USA - Sample 500um MDA	Environmental
3300004778	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh	Environmental
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24809J26612_10036114	3300002100	Soil	MNNNKKREDLSDKIKIALDKAIKDVIAETKSKNSYLVVADKKGNIKKIPAKDL*
Ga0062383_102799741	3300004778	Wetland Sediment	MIKKVKREDLSGKIKIALDKAIKNVIAETKAKNSYMVIADKNGNIQKIPAKDL*
Ga0062383_105738132	3300004778	Wetland Sediment	MNNRPKREDLSGKIKIALDKAISKVVAETKAKNSYLVIADKKGNIKKIPAKDL*
Ga0068999_100946102	3300005205	Natural And Restored Wetlands	MSIIKKREDLSDKIKVALDKAIKKVIAETKEKNSYMVVADKNGKIRKIPAKDL*
Ga0070676_105961962	3300005328	Miscanthus Rhizosphere	VINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNIKKIPARDL*
Ga0070670_1000505472	3300005331	Switchgrass Rhizosphere	MSEGNKRENLTGKIKIALDNAIKKVIAETKAKNSYMVIADKKGNVKKIPASDL*
Ga0068869_1001381271	3300005334	Miscanthus Rhizosphere	MSKLQKREDLSDKIKIALDKAIQKVIAETKATNTYMVYSDKKGNIIKVPAKDL*
Ga0068868_1002667721	3300005338	Miscanthus Rhizosphere	LVINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNIKKIPARDL*
Ga0070689_1001506613	3300005340	Switchgrass Rhizosphere	MIDPKKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPASDL*
Ga0070673_1004114502	3300005364	Switchgrass Rhizosphere	MSNRKKEKIAPKIKIALDNAIKKIIAETKAKNSYLVIADKKGNIKKIPARDL*
Ga0070667_1002964162	3300005367	Switchgrass Rhizosphere	MSEPKKREDLSDKIQIALDKAIQKVIAETKATNTYMVYSDKKGNIIKVPAKDL*
Ga0070685_114881982	3300005466	Switchgrass Rhizosphere	MIDPKKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPASDL**
Ga0074211_1224851	3300005487	Sediment	MRNLRKREDSAMIKIALDKAIKNVIAETKAKNSYLVIADKKGNIKKVPAKDL*
Ga0070665_1005641533	3300005548	Switchgrass Rhizosphere	MDNAKKREDLSDKIQIALDKAIQKVIAETKAKNSYLVYADKDGKIIKVPAKDL*
Ga0068861_1005170952	3300005719	Switchgrass Rhizosphere	MSNGKKRENPAPKIKIALDNAIKKIIAETKAKNSYLVIADKKGNIKKIPARDL*
Ga0068862_1026669581	3300005844	Switchgrass Rhizosphere	KKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPARDL*
Ga0073926_100131241	3300005943	Sand	EDLSDKIKVALDKAIKNVIAETKAKNSFLVVADKKGNIKKIPAKDL*
Ga0073922_10067153	3300005955	Sand	MSIIKQREDLSDKIKVALDKAIKNVIAETKAKNSFLVVADKKGNIKKIPAKDL*
Ga0068871_1001634361	3300006358	Miscanthus Rhizosphere	LVINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNIKKIP
Ga0079216_106999422	3300006918	Agricultural Soil	MSNLKKREDLSDKIKIALDKAIKNVIAETKTKNSFLVIADKKGNIKKIPAKDL*
Ga0079216_119926442	3300006918	Agricultural Soil	MEKVSKKRDLSSKIKTALDKAVKKVIADQKAKDGYLITGDKAGNIKKIPAK
Ga0079218_124202612	3300007004	Agricultural Soil	MNKKEREDLSSKIKIALDKAIQKVIAEEKARNGFLVISDRDGNIKKIPAKDF*
Ga0105679_105686294	3300007790	Soil	MEKVSKKSDLSEKIKTALDKAVKKVITDQKAKNGYLITGDAQGNIKKIPAKDL*
Ga0105049_104838632	3300007799	Freshwater	MSIAKEKKDLSAQIKKALDKATKKVIAETKAKNSYMVIADKNGTIKKIPAKDL*
Ga0105047_104604113	3300009083	Freshwater	MSIAKEKQDLSAQIKKALDKATQKVIAETKAKNSYMVIAGKNGSIKKIPAKDL*
Ga0114962_101392932	3300009151	Freshwater Lake	MIKQKKREDLSAKIQVALDKAIQQVKADTKAKNSFFVIADENGNIKKIPAKDL*
Ga0114938_100003581	3300009430	Groundwater	MKINKKPGDLRGKIKVALDKAIKKVIAEEKARNGYLVVADKEGKIKKIPAKDL*
Ga0114939_100130185	3300009455	Groundwater	MINVENKKDLSDKIQIALDKAKQNLIAETKAKNSYLVIADEKGNIKKIPAKDL*
Ga0123337_101818323	3300009695	Glacier Valley	MKPTNKRGDLSDKIQIALDKATQKIIAEAKANNSFIVVSDDKGGVKKIYAKDL*
Ga0116192_11774722	3300009710	Anaerobic Digestor Sludge	VNDLSSKIKIALDKAIEKVIAETKAKNSYMVVSDKKGNIKKIPASEL
Ga0116191_11001853	3300009716	Anaerobic Digestor Sludge	VNDLSSKIKIALDKAIEKVIAEIKAKNSYMVVSDKKGNIKKIPASEL*
Ga0116193_10874062	3300009768	Anaerobic Digestor Sludge	VNDLSSKIKIALDKAIEKVIAETKAKNSYMVVSDKKGNIKKIPASEL*
Ga0116226_105957782	3300009787	Host-Associated	MINQKKREDLSAKIQVALDKAIEQVKAETKAKNSFFVYSDKKGNIIKIAGKDL*
Ga0131077_1000234933	3300009873	Wastewater	MNNLKKKESLVPKIQEALDKAIQKVIAETKAKNSYLVIADKDGKITKIPAKDL*
Ga0131077_100877444	3300009873	Wastewater	MSNGNNRESRLGKIEIALAKAIQNVIAETKAKNSFLVIADKKGNIKKIPAKDL*
Ga0116255_107412462	3300010348	Anaerobic Digestor Sludge	MKPHLKANDLSSKIKVALDKAIEKVIAETKAKNSYMVVSDKKGNIKKIPASEL*
Ga0116248_102296642	3300010351	Anaerobic Digestor Sludge	MGPSDKREDLSVKIKIALDKATQKIIAEAKASGSYIVVSDKKGGVKKIYAKDL*
Ga0151623_10117481	3300011264	Sediment	MNNINKREDLSDKIKLALDKAIKKVIAETKAKNSYLVIADKDGKIKKIPAKDL*
Ga0136636_103401882	3300012044	Polar Desert Sand	MSIVKKREDLSGKIKVALDKAIQNLEVETKAKNSYLVIADKRGNIKKIPAKDL*
Ga0136623_100234082	3300012045	Polar Desert Sand	MNTPKKREDLSDKIKIALDKAIKNVIAETKSKNSYLVIADKDGNITRIPAKDL*
Ga0136634_100226611	3300012046	Polar Desert Sand	MSIAKETKDLSAQIKKALDKATQKVIAETRAKNSYMVIADKNGSIKKIPAKDL*
Ga0136632_105271671	3300012093	Polar Desert Sand	KKREDLSDKIKIALDKAIKNVIAETKSKNSFLVVADKDGNIIKIPAKDL*
Ga0136635_100248313	3300012530	Polar Desert Sand	MNTPKKREDLSDKIKVALDKAIKNVIAETKSKNSYLVIADKDGNITRIPAKDL*
Ga0138256_100421034	3300012533	Active Sludge	MNNNKKREDLSEKIKVALDKAIINVIAETKAKNSYLVIADKQGNIKKIPAKDL*
Ga0164241_112659272	3300012943	Soil	MNNTNKREDLSDKIKGALDKAIKKVIAETKAKNSYLVIADKDGKIKKIPARDL*
Ga0136639_100818113	3300013097	Polar Desert Sand	MSIAKETKDLSAQIKKALDKATQKVIAETKAKNSYMVIADKNGSIKKIPAKDL*
Ga0157374_101239863	3300013296	Miscanthus Rhizosphere	VINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNSKKIPARDL*
Ga0157375_134355031	3300013308	Miscanthus Rhizosphere	DPKKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPASDL*
Ga0120158_103624212	3300013772	Permafrost	MSTSKKREDLSPKITVALHKAIQRVIAEEKAHNGYLVISDHKGNIKKIPAKDFMNSNPFHLISM*
Ga0167666_10316353	3300015194	Glacier Forefield Soil	MSTVKKQEDLSGKIKIALDKAIKKVVEETKAKNSYFVFSDKNGVIKKIPAKDL*
Ga0167625_10296892	3300015198	Glacier Forefield Soil	MSTVKKQEDLSEKIKIALDKAIKKVVEETKAKNSYFVFSDKNGNIKKIPAKDL*
Ga0183260_108339141	3300017787	Polar Desert Sand	MVIDGSPKIKIALDKAIQKIIAEEKARNGYLVVSDSNGNIKRIPAKDL
Ga0184615_100275942	3300018059	Groundwater Sediment	MADKKKNKSFSAKIKIALSKAIEKVIAEEKARNGYLVVSDKKGNIKKIPASEL
Ga0184629_103447791	3300018084	Groundwater Sediment	MVNNKNSKDLSGKIKIALDKAIKKVIAEEKARDGYLVVSDKKGNIKKIPAREL
Ga0193609_10422261	3300018906	Soil	MSKLKKREDLSDKIKIALDKAITNVIAETKSKNTYLVIADDDGNIKKIPAKDL
Ga0187893_1000233827	3300019487	Microbial Mat On Rocks	MKNNSKKVEDLSDKIKVALDKAIENVIAETKAKNSYLVIADKNGKIKKIPAKDL
Ga0193726_11366022	3300020021	Soil	MIKKKSEDLSDKIQIALDKAIQKVIAETKAKNSYLVIADKKGNIKKIPAKDL
Ga0193752_11388222	3300020027	Soil	MSSKKKREDLSAKIKIALDKAIQGVIAETKAKNSYLVIADKKGSIIKIPAKDL
Ga0193753_100025629	3300020034	Soil	MNTGKKIEDLSDKIKIALDKAIQGVIAETKAKNSYLVIADKKGNIIKIPAKDL
Ga0193753_100131702	3300020034	Soil	MSSKKKREDLSAKIKIALDKAIQGVIAETKAKNSYLVVSDKKGSIIKIPAKDL
Ga0210377_100532182	3300021090	Groundwater Sediment	MADKKKNKDLSAKIKIALSKAIEKVIAEEKARNGYLVVSDKKGNIKKIPASEL
Ga0210406_10000018212	3300021168	Soil	MNSDNKGKDLSGKIKIALDKAIQNVIAETKAKNSYMVISDKNGGIKKIPARDL
Ga0193699_102492282	3300021363	Soil	MNNGKKREDLSDKIKIALDEAIKDVIAETKAKNSYMVIADKKGNIKKIPAKDL
Ga0210390_103925152	3300021474	Soil	MNSDNKSKDLSGKIKIALDKAIQGVIAETKAKNSYMVISDKNGGVKKIPAKDL
Ga0193742_10931922	3300021976	Soil	MSSKKKREDLSAKIKIALDKAIQGVIAETKAKNSYMVIADKKGNIKKIPARDL
Ga0212090_101457483	3300022561	Glacier Valley	MKPTNKRGDLSDKIQIALDKATQKIIAEAKANNSFIVVSDDKGGVKKIYAKDL
Ga0247813_101117672	3300023171	Plant Litter	MIIKKKREDLSGKIKTALDKGIQKLIAETKATNSYIVVSDKNGKVKKIPAKDL
Ga0256612_12818792	3300023194	Activated Sludge	MDSSKKAEDLSAKIQVALDKAIQGVIAETKAKNSYMVIADKKGHIKKIPAKDL
Ga0179589_104640802	3300024288	Vadose Zone Soil	KSLILSYTKKSLAMPNKQKREDLSEKIKIALDKGIQKLIAETKAKNSYLVIADKNGKIKKIYAKDL
Ga0233391_10094461	3300024304	Deep Subsurface Sediment	MSNIKKREDLSGKIKIALDKAIVKVVAETKAKNSYLVVADKKGNIKKIPAKDL
Ga0209398_100000281	3300025106	Groundwater	MYIQDLQGMKINKKPGDLRGKIKVALDKAIKKVIAEEKARNGYLVVADKEGKIKKIPAKD
Ga0209594_10262934	3300025130	Groundwater	MVNGKKQEDLSGKIKIALDKAIKKVIAEEKARNGYLVVTDKEGKIKKIPAKDL
Ga0209594_10510452	3300025130	Groundwater	MINVENKKDLSDKIQIALDKAKQNLIAETKAKNSYLVIADEKGNIKKIPAKDL
Ga0208826_10632202	3300025691	Anaerobic Digestor Sludge	MKPHTKVNDLSSKIKIALDKAIEKVIAETKAKNSYMVVSDKKGNIKKIPASEL
Ga0207710_100043035	3300025900	Switchgrass Rhizosphere	MIDPKKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPASDL
Ga0207680_1000004850	3300025903	Switchgrass Rhizosphere	VINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNIKKIPARDL
Ga0207647_101361772	3300025904	Corn Rhizosphere	MIDPKKVEDLSDKIQIALEKAIKVVIAEAKARNSYLVIADKKGNIKKIPARDL
Ga0207650_113643991	3300025925	Switchgrass Rhizosphere	MSEGNKRENLTGKIKIALDNAIKKVIAETKAKNSYMVIADKKGNVKKIPASDL
Ga0207689_102948062	3300025942	Miscanthus Rhizosphere	MVIKEKREDLSGKIKIALDKGIKKLIAETKATNSYLVVSDKNGKIKKISAKDL
Ga0207651_102632571	3300025960	Switchgrass Rhizosphere	KGKKRENPAPKIKIALDNAIKKIIAETKAKNSYLVIADKKGNIKKIPARDL
Ga0207712_100610962	3300025961	Switchgrass Rhizosphere	MSEPKKREDLSDKIQIALDKAIQKVIAETKATNTYMVYSDKKGNIIKVPAKDL
Ga0210145_10344922	3300025973	Natural And Restored Wetlands	MSIIKKREDLSDKIKVALDKAIKKVIAETKEKNSYMVVADKNGKIRKIPAKDL
Ga0207703_119104621	3300026035	Switchgrass Rhizosphere	VINKEKKRENLSPKIKIALDNAIKKVIAETKARNSYLVIADKKGNIKKIPA
Ga0207639_118318302	3300026041	Corn Rhizosphere	VINKEKKRENLSPKIKIALDNAIKKVIAETKAKNSYLVIADKKGNIKKIPARDL
Ga0207641_101339542	3300026088	Switchgrass Rhizosphere	MANKKQREDLSAKIKIALDKGIQKLIAETKAKNSYLVIADKNGNIKEIPAKDL
Ga0207675_10001299310	3300026118	Switchgrass Rhizosphere	MSKLQKREDLSDKIKIALDKAIQKVIAETKATNTYMVYSDKKGNIIKVPAKDL
Ga0209850_10064852	3300026931	Sand	MSIIKQREDLSDKIKVALDKAIKNVIAETKAKNSFLVVADKKGNIKKIPAKDL
Ga0209867_10224812	3300027393	Sand	EDLSDKIKVALDKAIKNVIAETKAKNSFLVVADKKGNIKKIPAKDL
Ga0209464_102714881	3300027778	Wetland Sediment	MNNRPKREDLSGKIKIALDKAISKVVAETKAKNSYLVIADKKGNIKKIPAKDL
Ga0209476_102155961	3300027802	Activated Sludge	MNNNKKREDLSEKIKVALDKAIINVIAETKAKNSYLVIADKQGNIKKIPAKDL
Ga0209797_102188201	3300027831	Wetland Sediment	MSNSSKREDLSGKIQIALDKAIKNVIAETKAKNSYMVVADKKGNIKKIPAKDL
Ga0209683_102198702	3300027840	Wetland Sediment	MKNSSKREDLSSKIKIALDKAIKNVIAETKAKNSYMVVADKKGNIKKIPAKDL
Ga0209798_102258431	3300027843	Wetland Sediment	MIKKVKREDLSGKIKIALDKAIKNVIAETKAKNSYMVIADKNGNIQKIPAKDL
Ga0268266_103480493	3300028379	Switchgrass Rhizosphere	MDNAKKREDLSDKIQIALDKAIQKVIAETKAKNSYLVYADKDGKIIKVPAKDL
Ga0302164_101823092	3300028664	Fen	MVIKQKREDLSGKIKTALDKGIQKLIAETKATNSYIVVSDKSGKVKKIPAKDL
Ga0265338_100646212	3300028800	Rhizosphere	MITQKNTEDLSTKIKIALDKAVEKVIAETKTKNCYLVFADDKGNIKKVFAKDL
(restricted) Ga0255311_10770142	3300031150	Sandy Soil	MNTAKKTEDLSDKIKVALDKAIKNVIAETKAKNSYMDIADKNGKIKKIPAKDL
(restricted) Ga0255310_100189122	3300031197	Sandy Soil	MNTAKKTEDLSDKIKVALDKAIKNVIAETKAKNSYMVIADKNGKIKKIPAKDL
Ga0265316_100666891	3300031344	Rhizosphere	DLSTKIKIALDKAVEKVIAETKTKNCYLVFADDKGNIKKVFAKDL
Ga0307509_101603103	3300031507	Ectomycorrhiza	MSSKKKVEDLSDKIKIALDEAIKEVIAETKAKNSYLVVADKKGNIKKIPAKDL
Ga0315290_116062982	3300031834	Sediment	MSTSKKREDLSGKIQIALDKAIKNVIAETKAKNSYLVIADKDGKVKKIPAKDL
Ga0308174_109130732	3300031939	Soil	MEKVKNKKDLSSKMKTALDKAVKKIIAEEKSRNGHLVVGDENGNIKKIPAKDLK
Ga0307414_103654413	3300032004	Rhizosphere	MNNNKKREDLSDKIKTALDKAIKNVIAETKAKNSYLVIADKKGNIKKIPAKDL
Ga0335397_103489632	3300032420	Freshwater	MSIAKEKQDLSAQIKKALDKATQKVIAETKAKNSYMVIAGKNGSIKKIPAKDL
Ga0334991_0004883_2808_2969	3300034013	Freshwater	MNAVKTREDLSPKITAALKKAIEKVIAETKEKNSYMVISDKNGKIKKIPAKDL
Ga0370506_005871_2167_2328	3300034157	Untreated Peat Soil	MENKDKPGDLRDKIKIALDKAIQKVIAEEKASNGYLVVADKDGNIKKIPASEL
Ga0370487_0007774_470_631	3300034170	Untreated Peat Soil	MVIKQKREDLSGKIKTALDKGIQKLIAETKATNSYIVVSDKNGKVKKIPAKDL