Metagenome / Metatranscriptome Family F092143

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092143
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	64 residues
Representative Sequence	RAAIILALADEIEARCPHGRRITVDCEIGRNVTLSVPLLPSWLARDLDKRFERAFGRALIVRH
Number of Associated Samples	90
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.99 %
% of genes near scaffold ends (potentially truncated)	93.46 %
% of genes from short scaffolds (< 2000 bps)	87.85 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.720 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere (13.084 % of family members)
Environment Ontology (ENVO)	Unclassified (41.121 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.87% β-sheet: 13.19% Coil/Unstructured: 54.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00069	Pkinase	6.54
PF03219	TLC	5.61
PF13472	Lipase_GDSL_2	4.67
PF07043	DUF1328	3.74
PF07606	DUF1569	2.80
PF02687	FtsX	2.80
PF13398	Peptidase_M50B	1.87
PF01370	Epimerase	1.87
PF02742	Fe_dep_repr_C	1.87
PF05368	NmrA	1.87
PF00561	Abhydrolase_1	0.93
PF01047	MarR	0.93
PF13676	TIR_2	0.93
PF12704	MacB_PCD	0.93
PF13471	Transglut_core3	0.93
PF12681	Glyoxalase_2	0.93
PF01027	Bax1-I	0.93
PF01895	PhoU	0.93
PF00067	p450	0.93
PF00266	Aminotran_5	0.93
PF13620	CarboxypepD_reg	0.93
PF01243	Putative_PNPOx	0.93
PF16576	HlyD_D23	0.93
PF00440	TetR_N	0.93
PF01790	LGT	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	26.17
COG3202	ATP/ADP translocase	Energy production and conversion [C]	5.61
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	3.74
COG1321	Mn-dependent transcriptional regulator MntR, DtxR family	Transcription [K]	1.87
COG0682	Prolipoprotein diacylglyceryltransferase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG2124	Cytochrome P450	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	67.29 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	3.74 %
unclassified Elusimicrobiota	no rank	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	3.74 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.74 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.74 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	0.93 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.74 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.93 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.74 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.93 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	15.89 %
Unclassified	root	N/A	10.28 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	3.74 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.93 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	0.93 %
Elusimicrobia bacterium GWA2_38_7	species	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908016\|OU_2_1_1_newblercontig13873	All Organisms → cellular organisms → Bacteria → Elusimicrobia → unclassified Elusimicrobiota → Elusimicrobia bacterium GWA2_38_7	709	Open in IMG/M
3300003319\|soilL2_10009685	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	6038	Open in IMG/M
3300003321\|soilH1_10106268	All Organisms → cellular organisms → Bacteria	2085	Open in IMG/M
3300004114\|Ga0062593_100251139	Not Available	1461	Open in IMG/M
3300004114\|Ga0062593_101997687	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300004114\|Ga0062593_102672253	All Organisms → cellular organisms → Bacteria → Acidobacteria	568	Open in IMG/M
3300004157\|Ga0062590_102324403	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300004463\|Ga0063356_100118601	All Organisms → cellular organisms → Bacteria → Acidobacteria	2928	Open in IMG/M
3300004480\|Ga0062592_101228174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	702	Open in IMG/M
3300004643\|Ga0062591_100987151	Not Available	799	Open in IMG/M
3300005293\|Ga0065715_10677413	Not Available	662	Open in IMG/M
3300005293\|Ga0065715_10701117	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300005295\|Ga0065707_10975776	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300005334\|Ga0068869_101606706	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300005338\|Ga0068868_102055320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	543	Open in IMG/M
3300005356\|Ga0070674_102158092	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300005364\|Ga0070673_100789398	All Organisms → cellular organisms → Bacteria → Acidobacteria	876	Open in IMG/M
3300005444\|Ga0070694_100420506	All Organisms → cellular organisms → Bacteria → Acidobacteria	1050	Open in IMG/M
3300005467\|Ga0070706_100991461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300005471\|Ga0070698_100756436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	915	Open in IMG/M
3300005518\|Ga0070699_101079964	All Organisms → cellular organisms → Bacteria → Acidobacteria	736	Open in IMG/M
3300005536\|Ga0070697_101689754	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300005545\|Ga0070695_100606990	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005546\|Ga0070696_100377391	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300005546\|Ga0070696_100419977	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300005549\|Ga0070704_100212168	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300005617\|Ga0068859_102522415	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005618\|Ga0068864_102410127	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005719\|Ga0068861_100798510	All Organisms → cellular organisms → Bacteria → Acidobacteria	885	Open in IMG/M
3300005719\|Ga0068861_101848964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300005764\|Ga0066903_106904592	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300005842\|Ga0068858_100741215	All Organisms → cellular organisms → Bacteria → Acidobacteria	957	Open in IMG/M
3300005843\|Ga0068860_101348878	All Organisms → cellular organisms → Bacteria → Acidobacteria	734	Open in IMG/M
3300005843\|Ga0068860_102294445	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	560	Open in IMG/M
3300006358\|Ga0068871_100675540	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006358\|Ga0068871_101892155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300006846\|Ga0075430_100455145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1056	Open in IMG/M
3300006854\|Ga0075425_100236035	All Organisms → cellular organisms → Bacteria → Acidobacteria	2104	Open in IMG/M
3300006854\|Ga0075425_101983370	All Organisms → cellular organisms → Bacteria → Acidobacteria	651	Open in IMG/M
3300006871\|Ga0075434_100196914	All Organisms → cellular organisms → Bacteria → Acidobacteria	2035	Open in IMG/M
3300006871\|Ga0075434_102287834	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006876\|Ga0079217_10727712	All Organisms → cellular organisms → Bacteria → Acidobacteria	673	Open in IMG/M
3300006904\|Ga0075424_100493721	All Organisms → cellular organisms → Bacteria → Acidobacteria	1307	Open in IMG/M
3300009012\|Ga0066710_102834788	All Organisms → cellular organisms → Bacteria → Acidobacteria	684	Open in IMG/M
3300009092\|Ga0105250_10268235	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300009093\|Ga0105240_12400196	All Organisms → cellular organisms → Bacteria → Acidobacteria	546	Open in IMG/M
3300009100\|Ga0075418_11728772	All Organisms → cellular organisms → Bacteria → Acidobacteria	680	Open in IMG/M
3300009137\|Ga0066709_100815555	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300009137\|Ga0066709_102721838	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300009143\|Ga0099792_10850073	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300009147\|Ga0114129_13283340	All Organisms → cellular organisms → Bacteria → Acidobacteria	524	Open in IMG/M
3300009148\|Ga0105243_11307561	All Organisms → cellular organisms → Bacteria → Acidobacteria	742	Open in IMG/M
3300009162\|Ga0075423_10663038	All Organisms → cellular organisms → Bacteria → Acidobacteria	1101	Open in IMG/M
3300009174\|Ga0105241_11757992	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010046\|Ga0126384_11580140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	617	Open in IMG/M
3300010333\|Ga0134080_10328911	All Organisms → cellular organisms → Bacteria → Acidobacteria	692	Open in IMG/M
3300010359\|Ga0126376_10291464	All Organisms → cellular organisms → Bacteria → Acidobacteria	1414	Open in IMG/M
3300010360\|Ga0126372_12797246	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300010400\|Ga0134122_10442695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1160	Open in IMG/M
3300011423\|Ga0137436_1197008	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300012159\|Ga0137344_1067902	All Organisms → cellular organisms → Bacteria → Acidobacteria	651	Open in IMG/M
3300012208\|Ga0137376_10756392	Not Available	837	Open in IMG/M
3300012212\|Ga0150985_112400138	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300012356\|Ga0137371_11338329	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300012469\|Ga0150984_102774505	All Organisms → cellular organisms → Bacteria → Acidobacteria	669	Open in IMG/M
3300012469\|Ga0150984_113995783	All Organisms → cellular organisms → Bacteria → Acidobacteria	645	Open in IMG/M
3300012685\|Ga0137397_10813668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300012892\|Ga0157294_10247156	Not Available	547	Open in IMG/M
3300012904\|Ga0157282_10179685	All Organisms → cellular organisms → Bacteria → Acidobacteria	668	Open in IMG/M
3300012922\|Ga0137394_11041940	All Organisms → cellular organisms → Bacteria → Acidobacteria	679	Open in IMG/M
3300012948\|Ga0126375_11993113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300013297\|Ga0157378_10201671	All Organisms → cellular organisms → Bacteria → Acidobacteria	1882	Open in IMG/M
3300014304\|Ga0075340_1039536	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300014326\|Ga0157380_13338905	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300015373\|Ga0132257_104179690	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300018028\|Ga0184608_10525239	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300018476\|Ga0190274_11732604	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300018476\|Ga0190274_12746796	All Organisms → cellular organisms → Bacteria → Acidobacteria	589	Open in IMG/M
3300025910\|Ga0207684_10526031	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300026035\|Ga0207703_11377171	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300026067\|Ga0207678_11530681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300026088\|Ga0207641_12105475	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300026089\|Ga0207648_10719787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	926	Open in IMG/M
3300026089\|Ga0207648_10914279	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300027873\|Ga0209814_10168419	All Organisms → cellular organisms → Bacteria → Acidobacteria	942	Open in IMG/M
3300027876\|Ga0209974_10114931	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
3300028380\|Ga0268265_11101759	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300028380\|Ga0268265_11453083	All Organisms → cellular organisms → Bacteria → Acidobacteria	688	Open in IMG/M
3300028381\|Ga0268264_10101130	All Organisms → cellular organisms → Bacteria → Acidobacteria	2505	Open in IMG/M
3300028381\|Ga0268264_11251456	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300028381\|Ga0268264_11720757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	637	Open in IMG/M
3300030858\|Ga0102759_1014688	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300031231\|Ga0170824_112278254	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	523	Open in IMG/M
3300031547\|Ga0310887_11083438	All Organisms → cellular organisms → Bacteria → Acidobacteria	514	Open in IMG/M
3300031716\|Ga0310813_10174227	All Organisms → cellular organisms → Bacteria → Acidobacteria	1747	Open in IMG/M
3300031720\|Ga0307469_10562526	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300031858\|Ga0310892_11284746	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300031892\|Ga0310893_10276765	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	703	Open in IMG/M
3300031908\|Ga0310900_10864362	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	736	Open in IMG/M
3300032017\|Ga0310899_10019942	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2151	Open in IMG/M
3300034817\|Ga0373948_0020047	All Organisms → cellular organisms → Bacteria → Acidobacteria	1270	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	52.34%
Host-Associated	Host-Associated	47.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.60%
Plants	Host-Associated → Plants	47.66%
Aquatic	Environmental → Aquatic	2.80%
Unclassified	Environmental → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.50%
Sediment	Environmental → Aquatic → Sediment	2.80%
Roots	Host-Associated → Plants → Roots	2.80%
Unclassified	Environmental → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	19.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.89%
Loam	Environmental → Terrestrial → Soil → Loam	11.21%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	19.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.89%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	13.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.61%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.87%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011423	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT119_2	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300030858	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6B (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_01900060	2124908016		RGLLERAAIIVALADEIEARCPPGSRIAVDCEVGRTVTLSVPLLPSWLAKDLDKRFERAFGRTLTVKHGT
INPhiseqgaiiFebDRAFT_1048197931	3300000364	Soil	PPGEHIAIRSEVGRNVTLSIPVLPSWLATGLEKRFERAFGHALIVRH*
soilL2_100096856	3300003319	Sugarcane Root And Bulk Soil	AAIILALADEIEARCPHGARIPVTCEVGRHVVLTVRTLPSWLMRDLDQRFEHAFGRQLIVRHRA*
soilH1_101062683	3300003321	Sugarcane Root And Bulk Soil	SSSSAPSRRCPHGQSIAIQAKTGRAVTLSIPVLSSWVQKDLEKRFDPAFGRALIVRH*
Ga0062593_1002511391	3300004114	Soil	AAIILALADEIEARCPGGSRIAVDCEVGRNVTLSVPVLPSWLAKDLDRRFERAFGRALAVKHGT*
Ga0062593_1019976872	3300004114	Soil	VDDGWLERAAIVLALADEIEARCPHGRRITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLIVKHRT*
Ga0062593_1026722531	3300004114	Soil	ELVDDGWLERAAIVLALADEIEARCPHGRRITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLVVRYGA*
Ga0062590_1023244031	3300004157	Soil	IILALADEIEARCPGGSRIAVDCEVGRNVTLSVPVLPSWLAKDLDRRFERAFGRALAVKHGT*
Ga0063356_1001186013	3300004463	Arabidopsis Thaliana Rhizosphere	LLDRAAIILALADEIEARCPHGSRIPVTCEIGRHVVLTIRTLPSWLMRDLDQRFEQAFGRQLIVRHRA*
Ga0062592_1012281741	3300004480	Soil	AGLLDRAAIVLALADEIEARCPHGRPITVHCRVDRKVTLTVPLLPSWLAKDIDKRFERAFGRALIVRH*
Ga0062591_1009871511	3300004643	Soil	DEIEARCPGGSRIAVDCEVGRNVTLSVPVLPSWLAKDLDRRFERAFGRALAVKHGT*
Ga0065715_106774132	3300005293	Miscanthus Rhizosphere	DRAAILLALADEIEARCPHGGRIAVDCQIGRNNVTLSVPLLPSWLAKDLDKRFERAFGRSLIVRH*
Ga0065715_107011171	3300005293	Miscanthus Rhizosphere	RCPHGRRIAVDCEIGRHVTLTVPLLPSWLARDLDRRFERAFGRSLIVRPSFNIGSRLT*
Ga0065707_109757761	3300005295	Switchgrass Rhizosphere	AIILALADEIEARCPHGRRITVGCEIGRNVTLSVPLLPSWLARDLDKRFERAFGRALIVRH*
Ga0068869_1016067061	3300005334	Miscanthus Rhizosphere	ILALADEIEARCPHGSRIAVDCEIGRTVTLSVPLLPSWLVKDLDRRFERAFGRPLIVRH*
Ga0068868_1020553202	3300005338	Miscanthus Rhizosphere	IESRCPPGNRIAVDFTIGRYVTLSVPLLPSWLAKDLDKRFERAFGRSLVVRH*
Ga0070674_1021580921	3300005356	Miscanthus Rhizosphere	EAIDAELVDRAAIILALADEIEARCPHGRRIAVECTVGRNVTVQVPLLPSWLERDLDKRFERAFGRALIVRH*
Ga0070673_1007893982	3300005364	Switchgrass Rhizosphere	ALADEIEARCPPGRRIVIDCKIGRNVTLSVPLLPSWLAKDLDQRFERAFGRPLIVRH*
Ga0070694_1004205061	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RAQLHRAAVVLALADEIEARCPHRRPIAVTCRVGRNVTISVPLLLSWRASDLGQRFERAFGKRLIVVTGA*
Ga0070706_1009914611	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DRAAIILALADEIEARCPGSGPIAVNCTIGKNVTLSVPLLPSWLAKDLDKRFESAFGRSLVVRH*
Ga0070698_1007564361	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RDTLDLGTVDRAAILLALADEIEARCARGSPIAIDCKIGRNVTLTVPLLPSWLARDLDKRFERAFGRPLIVRH*
Ga0070699_1010799642	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLAPVREASARGLLDRLALILALADEIEARCPPGRRISISCTLGRRVTLRIPALQSWLVKDLDKRFERAFGRPLIVSGARERG*
Ga0070697_1016897541	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	DEIEARCPRGIRIVVDCEIGRNVTLSVPVLPSWLAKDLDRRFERAFGRSLTVKHGT*
Ga0070695_1006069901	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	ADEIEARCPRGQPIAVRSDVGRVVTLSIPLLPTWLVKDLDKRFERAFARALIIRH*
Ga0070696_1003773913	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AAIILALADEIEARCPHGRRIAVDCTIGRSVTLSVPLLPSWLARDLDKRFERAFGRSLIIRRSRGVSRSGA*
Ga0070696_1004199773	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	DEIEARCPRGIRIVVDCEIGRNVTLSVPVLPSWLAKDLDRRFERAFGRSLTVRHES*
Ga0070704_1002121682	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	ILALADEIEARCPHGARIAVECKVGRSVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT*
Ga0068859_1025224152	3300005617	Switchgrass Rhizosphere	ILALADEIEARCPHGERIAVECKIGRNVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT*
Ga0068864_1024101271	3300005618	Switchgrass Rhizosphere	TIERTALDRAAVVVALADEIEARCPPGRRIQIKCEIGRHVKLSVPLLPSWLGDHLDKRFQRAFGRTLLVRHATSG*
Ga0068861_1007985101	3300005719	Switchgrass Rhizosphere	DRAAVILALADEIEARCPHGGRIAVECKIGRSVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT*
Ga0068861_1018489642	3300005719	Switchgrass Rhizosphere	VDRAAIILALADEIEARCPHGSRIAVDCQIGRNVTLSVPLLPSWLAKDLDKRFERAFGRTLIVRH*
Ga0066903_1039927761	3300005764	Tropical Forest Soil	EIEARCPPGQPIAIRSEVNRHVTLSIPVLPSWLEQDLEKRFERAFGRELIVRH*
Ga0066903_1069045922	3300005764	Tropical Forest Soil	DRAAIILALADEIEARCPHDRRIIVDCEIDRHVVLTVRALPSWLAKDLDTRFEHAFGRTLIVRHG*
Ga0068858_1007412152	3300005842	Switchgrass Rhizosphere	DRAAIILALADEIEARCPHGRRIAVDCEIGRHVTLTVPLLPSWLARDLDRRFERAFGRSLIVRPSFNIGSRLT*
Ga0068860_1013488782	3300005843	Switchgrass Rhizosphere	LSLADEIEARCPHGQAIAIHAQIGRTVTLSIPALRSWLVRELEQRFERAFDRPLIVRR*
Ga0068860_1022944451	3300005843	Switchgrass Rhizosphere	EIESRCPRGGRIAIDCRIDRNVTLTVPMLPSWLAKDLDKRFARAFGRSLIVRH*
Ga0068871_1006755402	3300006358	Miscanthus Rhizosphere	IILALADEIEARCPPGARIAVDCEVGRKVTLSVPLLPSWLVKDLDKRFERAFGRPLIVRH
Ga0068871_1018921552	3300006358	Miscanthus Rhizosphere	LALADEIEARCPQGGGIAVECRIGRSVTLSIPVLKSWLVKDLDKRFERAFGRSLIVRH*
Ga0075430_1004551453	3300006846	Populus Rhizosphere	AVILTLADEIEARCPRNRPIVVSCTIGRSVTIAVPAMPSWLAKDIDKRFAQTFGRPLIVRHHA*
Ga0075425_1002360351	3300006854	Populus Rhizosphere	ALADEIEARCPVGRRIVVDCEIGRAVIVSVRSLPSWLAKDLDMRFERAFGRPLIVRYES*
Ga0075425_1019833703	3300006854	Populus Rhizosphere	VPLALDGDSSSGLLDRAAIILALADEIEARCPGRHAISASCTIGKYVTVSVPVLPSWLEKDLDKRFEHAFGKSLVVRH*
Ga0075434_1001969142	3300006871	Populus Rhizosphere	ARCPRGRPIKVDCEVGRRVTLSVRSLPSWLVKDLDKRFEHVFGRPLIVRHDMQD*
Ga0075434_1022878343	3300006871	Populus Rhizosphere	IILALADEIEARCPGSGRIAVACSIAKHVTLSVPLLPSWLAKDLDKRFENAFGRPLVVRH
Ga0079217_107277122	3300006876	Agricultural Soil	IEARCPPGRRIAVDCTIGRDVTLTVPALPSWLAKDVDRRFERAFGRTLIVRH*
Ga0075424_1004937211	3300006904	Populus Rhizosphere	LADEIEARCPRGQPIAIRSDIGRNVTLSIPLLPSWLAKDVEKRFERAFGRALIVRH*
Ga0066710_1028347881	3300009012	Grasslands Soil	GRDTIRPRQVDRAAIIVALADEIEARCPPGPAISVRCEVGRHVTMSVPLLRSWLVKDLDKRFERAFDRALIVRH
Ga0105250_102682352	3300009092	Switchgrass Rhizosphere	GDDAIDAELVDRAAIILALADEIEARCPHGRRIAVECTVGRNVTVQVPLLPSWLERDLDKRFERAFGRALIVRH*
Ga0105240_124001962	3300009093	Corn Rhizosphere	DRAAIILALADQIEARCPHGRRIEVDCEIGRHVTLTVPLLPSWLARDLDKRFERVFGRSLIVRH*
Ga0075418_117287722	3300009100	Populus Rhizosphere	GLVDRAATILALADEIEARCPHGRPIVVACEIGRRNVTLSVPVLPSWLAKDLDKRFERAFGRSLIVRH*
Ga0066709_1008155551	3300009137	Grasslands Soil	RGLLDRAAVVLALADEIETRCPPGRRIAVTCEIGRHVTLSVPLLPSWLAKDLDQRFAGAFGRSLIVTHEG*
Ga0066709_1027218381	3300009137	Grasslands Soil	LADEIEARCPRSRPVTVQCRIDRNVTLTVPQLRSWLVKDLDKRFARAFGRSLIVRH*
Ga0099792_108500731	3300009143	Vadose Zone Soil	LLDRAAVILALADEIEARCAPGRRIAVDCKIGHTVTLSVPLLPSWLAKDLDKRFERAFGRALIVRH*
Ga0114129_132833402	3300009147	Populus Rhizosphere	LALADEIEARCSGTGPISVDCEIGRRVTVSVPMLPSWLAESLDKRFERTFGRPLIVRH*
Ga0105243_113075611	3300009148	Miscanthus Rhizosphere	SGGRLDRAAIILALADEIEARCPGSGRIAVNCTISRHVTLSVPLLPSWLAKDLDKRFEHAFGRSLVVRH*
Ga0075423_106630383	3300009162	Populus Rhizosphere	DLLDRAAIILALADEIEARCPLGRQITLECRIDRNVTLTVPLLPSWLVKDLDKRFERAFGRTLIVRR*
Ga0105241_117579921	3300009174	Corn Rhizosphere	TSVPEPVDRAAVILALADEIEARCPHGGRIAVECKIGRNVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT*
Ga0126384_115801402	3300010046	Tropical Forest Soil	ADEIEARCPRGEPIAIRSEVNRHVTLSIPVLPSWLANDLDERFERAFGRELIVRH*
Ga0134080_103289111	3300010333	Grasslands Soil	DASDRRLLDRAAVVLALADEIETRCPPGRRIAVTCEIGRHVTLSVPLLPSWLAKDLDQRFEDAFGRSLIVTHGN*
Ga0126376_102914641	3300010359	Tropical Forest Soil	IILALADEIEARCPHGRPITLQCRTDRNVTLTVPLLPSWLAKDLDKRFERAFGRPLIVRH
Ga0126372_127972461	3300010360	Tropical Forest Soil	IVLSLADEIEARCPQGQPIAIRSDIGRNVTLSIPVLPSWLAKDVEKRFERAFGRALIVRH
Ga0134122_104426951	3300010400	Terrestrial Soil	LEAVDRAAIILALADEIEARCPQGGGIAVECRIGRSVTLSIPVLKSWLVKDLDKRFERAFGRSLIVRH*
Ga0137436_11970081	3300011423	Soil	AVILALADEIEARCPLGRPIKVECEVGRRVTVSVRSLPSWLAKDLDKRFEHVFGRSLIVRRDM*
Ga0137344_10679021	3300012159	Soil	DEIEARCPRGRRIAVDCEVGRNVTLSVPLLPSWLAKDLDDRFERVFGRALIIRHHI*
Ga0137376_107563921	3300012208	Vadose Zone Soil	DASDRRLLDRAAVVLALADEIETRCPPGRRIAVTCEIGRHVTLSVPLLPSWLAKDLDQRFADAFGRSLIVTHEG*
Ga0150985_1124001382	3300012212	Avena Fatua Rhizosphere	VLALADEIEARCPPGRIKVRCDIDRKVTLSVPLLPSWLAKDLDQRFERAFGRALIVKH*
Ga0137371_113383292	3300012356	Vadose Zone Soil	VDRAAIILALADEIEARCPHGVRIAVDCKIGRNVTLSVPLLPSWLAKDLDKRFERAFGRSLIVRH*
Ga0150984_1027745051	3300012469	Avena Fatua Rhizosphere	QDGREVAVVDRAAVVLALADEIEARCPPGRIKVRCDIDRKVTLSVPLLPSWLAKDLDQRFERAFGRALIIKH*
Ga0150984_1139957832	3300012469	Avena Fatua Rhizosphere	VDRAAVVLALADEIEARCPPGRIKVRCDIDRKVTLSVPLLPSWLAKDLDQRFERAFGRALIVKH*
Ga0137397_108136681	3300012685	Vadose Zone Soil	IEARCPRGRRIAVDCEIGRNVTLSVPLLPSWLAKDIDNRFERVFGRALIIKHHT*
Ga0157294_102471562	3300012892	Soil	AAIILTLADEIEARCPRNRPIVVSCTIGRSVTLAVPTMPSWLAKDIDKRFAQTFGRPLIVQHHA*
Ga0157282_101796852	3300012904	Soil	ERAAIVLALADEIVARCPHGRRITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLIVKHRT*
Ga0137394_110419401	3300012922	Vadose Zone Soil	GALDRAAIILALADEIEARCPHGVRIAIDCTIGRNVTLSVPLLPSWLVKDLDKRFERAFGRSLVVRH*
Ga0126375_119931132	3300012948	Tropical Forest Soil	RAAIILSLADEIEARCPPGQPIAIRSEVNRHVTLSIPVLPSWLEQDLEKRFERAFGRELIVRH*
Ga0157373_106047241	3300013100	Corn Rhizosphere	PPGQRITIRSHVGRTVTLSIPVLPSWLVDDLEKRFERAFKRALIVRH*
Ga0157378_102016711	3300013297	Miscanthus Rhizosphere	LADEIEARCPPGQPIAIRSDVNRNVTLSIPVLPSWLEQDLEKRFERAFGRELIVRH*
Ga0075340_10395361	3300014304	Natural And Restored Wetlands	EIEARCPHGRGITVRCRTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLVVRYRT*
Ga0163163_123864041	3300014325	Switchgrass Rhizosphere	PPGQPIAIRSEVNRDVTLSIPVLPSWLEQDLEKRFERAFGRELIVRH*
Ga0157380_133389052	3300014326	Switchgrass Rhizosphere	LVDDGWLERAAIVLALADEIEARCPHGRGITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLIVKHRTGASRI*
Ga0132257_1041796902	3300015373	Arabidopsis Rhizosphere	LALADEIEARCPHGRRIEVRCTMGRMVTVSVPLLRSWLVKDLDKRFLRAFGRPLVMRHAT
Ga0184608_105252391	3300018028	Groundwater Sediment	RAAIILALADEIEARCPHGRRITVDCEIGRNVTLSVPLLPSWLARDLDKRFERAFGRALIVRH
Ga0190274_117326041	3300018476	Soil	RAAIILALADEIEARCRRGSRIAVDCEIGRNVTLSIPALPSWLAKDLDRRFERAFGRSLTVKHGT
Ga0190274_127467961	3300018476	Soil	LGPAGDTSVPEPVDRAAVILALADEIEARCPHGGRIVVGCKIGRNVTLSIPMLKSWLVKDLDKRFERAFGRSLIVRT
Ga0207684_105260312	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	RAAIILALADEIEARCPGSGPIAVNCTIGKNVTLSVPLLPSWLAKDLDKRFESAFGRSLVVRH
Ga0207703_113771712	3300026035	Switchgrass Rhizosphere	LADEIESRCPPGNRIAVDFTIGRYVTLSVPLLPSWLAKDLDKRFERAFGRSLVVRH
Ga0207678_115306811	3300026067	Corn Rhizosphere	VDRAAIILALADEIEARCPHGRRIAVECEIGRHVTLTVPLLPSWLARDLDKRFERAFGRSLVVRH
Ga0207641_121054751	3300026088	Switchgrass Rhizosphere	LSIVGDVDPKVVERAAIVLSLADEIEARCPQGQPIAIRSDIGRNVTLSIPVLPSWLAKDVERRFERAFGRALIVRH
Ga0207648_107197872	3300026089	Miscanthus Rhizosphere	FVERAAIILSLADEIEARCPPGQPIAIRSEVNRDVTLSIPVLPSWLEQDLEKRFERAFGRELIVRH
Ga0207648_109142791	3300026089	Miscanthus Rhizosphere	GDTSVPEPVDRAAVILALADEIEARCPHGGRIAVECKIGRSVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT
Ga0207698_123043332	3300026142	Corn Rhizosphere	CPPGQRITIRSHIGRAVTLSIPVLPSWLVDDLEKRFERAFKRALIVRH
Ga0209814_101684192	3300027873	Populus Rhizosphere	LCLADEIEARCPPGERIAIRSQVDRNVTLSIPVLPSWLATGLEKRFERAFGHALIVRH
Ga0209974_101149312	3300027876	Arabidopsis Thaliana Rhizosphere	ITFASELVDEGWLERAAIVLALADEIEARCPHGRGITVECKTGRRTTLTVPLLPSWLAKDLDKRFERTFGHPLIVKHRT
Ga0268265_111017591	3300028380	Switchgrass Rhizosphere	GDTSVPEPVDRAAVILALADEIEARCPHGERIAVECKIGRNVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT
Ga0268265_114530832	3300028380	Switchgrass Rhizosphere	PSITFPSEVVDDGWLERAAIVLALADEIEARCPHGRRITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLIVKHRT
Ga0268264_101011304	3300028381	Switchgrass Rhizosphere	PKVVERAAIVLSLADEIEARCPQGQPIAIRSDIGRNVTLSIPVLPSWLAKDVERRFERAFGRALIVRH
Ga0268264_112514562	3300028381	Switchgrass Rhizosphere	GPSGDTSVPEPVDRAAVILALADEIEARCPHGGRIAVECKIGRSVTLSIPLLKSWLVKDLDKRFERAFGRSLIVRT
Ga0268264_117207572	3300028381	Switchgrass Rhizosphere	DIGPKQVERAAIILSLADEIEARCPHGQAIAIHAQIGRTVTLSIPALRSWLVRELEQRFERAFDRPLIVRR
Ga0307295_102363101	3300028708	Soil	IEARCPRGGRIAVHCRIGRDVKLSVPLLPSWLAKDLDQRFERAYGRPLIVRH
Ga0102759_10146881	3300030858	Soil	VVDRAAIILALADEIEARCRPGRIDVVCRIGRTVTLSVPLLPSWLATDLDQRFERAFGRALVIKH
Ga0170824_1122782541	3300031231	Forest Soil	VDEIEARCPRGGRIAVHCKIGRDVKLSVPLLPSWLVKDLDQRFERAFGRPLVVRH
Ga0310887_110834382	3300031547	Soil	DPDRAQLHRAAVVLALADEIEARCPHRRPIAVTCRVGRNVTISAPLLLSWRASDLGRRFERAFGKRLIVVTGA
Ga0310813_101742271	3300031716	Soil	HRAAVVLALADEIEARCPHRRPIAVTCRIGRHVSISVPLLLSWRDKDLSQRFERAFGKPLVVVTGA
Ga0307469_105625261	3300031720	Hardwood Forest Soil	LALADEIEARCPRGQPIAVRSDVGRVVTLSIPLLPTWLVNDLDKGFERAFARALIIRH
Ga0310892_112847461	3300031858	Soil	VDVDLVDRAAIILALADEIEARCPRDRRITIDCEIGRHVILTVRAMPSWLAKDLDSRFERAFGRALIVRHR
Ga0310893_102767651	3300031892	Soil	IGSKLVERAAIILSLADEIEARCPHGQAIAIHATIGQAVTLSIPALRSWLARELEKPFERAFGRSLIVRR
Ga0310900_108643621	3300031908	Soil	ADEIEARCPRGSRIAVDCEIGRNVTLSVPLLPSWLARDLDKRLERAFGRTLTVKHGT
Ga0310899_100199422	3300032017	Soil	AAAVVQRAGHRNAVIPSITFPSEVVDDGWLERAAIVLALADEIEARCPHGRRITVECKTGRRTTLTVPLLPSWLAKDLDKRFERSFGHPLIVKHRT
Ga0373948_0020047_1102_1269	3300034817	Rhizosphere Soil	ADEIEARCPPGKAIAIACRIARDVTIKVPQLPSWLATDVDERFERAFEHPLIVTH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092143

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences