Basic Information | |
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Family ID | F092059 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 47 residues |
Representative Sequence | MWLQNNFKLVMIGGLALIVGLSFMEARKTHKEIKKGEAQWLLKKKKK |
Number of Associated Samples | 70 |
Number of Associated Scaffolds | 106 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 31.82 % |
% of genes near scaffold ends (potentially truncated) | 1.87 % |
% of genes from short scaffolds (< 2000 bps) | 10.28 % |
Associated GOLD sequencing projects | 68 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (95.327 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine (15.888 % of family members) |
Environment Ontology (ENVO) | Unclassified (35.514 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (42.056 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 80.85% β-sheet: 0.00% Coil/Unstructured: 19.15% |
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Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Sediment Freshwater Sediment Freshwater Freshwater Lake Freshwater Freshwater, Plankton Freshwater Lake Freshwater Lake Freshwater Sediment Freshwater Freshwater Aqueous Estuarine Estuarine Estuarine Water Freshwater And Marine Marine Harbor Deep Subsurface Sediment |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
NpDRAFT_103054642 | 3300000929 | Freshwater And Marine | MWLQNNFKLVMIGGLALILGLSFMGARKTHKEIKKGEAQWLLKKKK* |
B570J29032_1088147992 | 3300002408 | Freshwater | VLKQMWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKKK* |
B570J29032_1088924673 | 3300002408 | Freshwater | MWLQNNFKLVMIGGLTLILGLSCMEARKTHKQIKKGEAQWLLKKKKK* |
Ga0069718_100288252 | 3300004481 | Sediment | MWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKKK* |
Ga0068876_102089441 | 3300005527 | Freshwater Lake | MWLQNNFNLVMIAGLTLIIGLSVGGARKTHKEIKKGEA |
Ga0070744_100095182 | 3300006484 | Estuarine | MWLQNNFKSIMNVGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKKK* |
Ga0070744_100308312 | 3300006484 | Estuarine | MWLQNNFKSIMNAGLVLILGLSALGARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0070744_100722842 | 3300006484 | Estuarine | MWLQNNFKLVMIGGLTLILGLSFMEARKTHKQIKKGEAQWLLKKKK* |
Ga0070744_101349542 | 3300006484 | Estuarine | MWLQNNFKSIMNAGVALIIGLSALGARQTHKEIKKGETQWVLWKKHKKNK* |
Ga0070749_102719462 | 3300006802 | Aqueous | MWLQNNFKLVMIGGLALIVGLSYMEARKTHKEIKKGEAQWVFLKKNKKK* |
Ga0102861_10515312 | 3300007544 | Estuarine | MWLQNNFKSIMNAGLALILGLSFMEARQTHKEIKKGEAQWVIWKKHKKK* |
Ga0102821_10452871 | 3300007557 | Estuarine | MWLQNNFKLVMIGSLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0102828_10670121 | 3300007559 | Estuarine | AGLVLILGLSALGARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0102828_10670122 | 3300007559 | Estuarine | MWLQNNFKSIMNAGLALIIGLSALGARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0102871_12023622 | 3300007620 | Estuarine | MWIRDNFNLVMIAGLTLILGLSYSEGRKTHKQIKKGEAQWLLKKKNKK* |
Ga0102863_10612891 | 3300007622 | Estuarine | NMWLQNNFKLVMIGGLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0114340_10054942 | 3300008107 | Freshwater, Plankton | MWLQNNFNLVMIAGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK* |
Ga0114343_10262022 | 3300008110 | Freshwater, Plankton | MWLQNNFNWVMIAGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK* |
Ga0114346_11295342 | 3300008113 | Freshwater, Plankton | MWLQNNFKLVRIGGLALIVGLSFMEARKTHKEIKKGEAQWVFLKKDKKK* |
Ga0114346_11633572 | 3300008113 | Freshwater, Plankton | MWLQNNFKLVMIGGLALIVGLSFMEARKTHKQIKKGEAQWLLKKKNKK* |
Ga0114355_10738674 | 3300008120 | Freshwater, Plankton | MWLQNNFNLVMIAGLTLIIGLSVGGARKTHQEIKKGEAQWLLKKKKK* |
Ga0114363_10004842 | 3300008266 | Freshwater, Plankton | MWLQNNFNLVMIVGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK* |
Ga0114364_10243376 | 3300008267 | Freshwater, Plankton | MIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKK |
Ga0114364_10449352 | 3300008267 | Freshwater, Plankton | MWLQNNFKLVMIGGLTLILGLSYMGARQTHKQIKKGEAQWLLKKNKKK* |
Ga0114364_10492532 | 3300008267 | Freshwater, Plankton | MWLQNNFKLVMIGGLALILGLSFMEARQTRKEIKKGEAQWVLWKKHKKNK* |
Ga0114364_10647143 | 3300008267 | Freshwater, Plankton | MWLQNNFKLVMIGGLALIVGLSFMEARKTHKEIKKGEAQWVFLKKDKKK* |
Ga0114364_11198532 | 3300008267 | Freshwater, Plankton | MIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKKK* |
Ga0114364_11619521 | 3300008267 | Freshwater, Plankton | MWLQNNFKLVMIGGLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0114876_11408373 | 3300008448 | Freshwater Lake | MWLQNNFKLVMIGGLTLILGLSYMGARQTHKQIKKGEAQWL |
Ga0102811_12341922 | 3300009024 | Estuarine | MWLQNNFKSIMNAGLVLILGLSALGARQTHKEIKKGEAQ |
Ga0102829_10241142 | 3300009026 | Estuarine | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKK* |
Ga0102864_10492243 | 3300009051 | Estuarine | LVMIAGLILILGLSYSEGRKTHKQIKKGEAQWLLKKKNKK* |
Ga0102864_10886311 | 3300009051 | Estuarine | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKK* |
Ga0102830_12056692 | 3300009059 | Estuarine | MWLQNNFKSIMNVGLALILGLSFMEERQTHKQIKKGEAQWLLKKKKKK* |
Ga0102815_104241231 | 3300009080 | Estuarine | MIGSLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0105099_100834523 | 3300009082 | Freshwater Sediment | MWLQNNFKLVMIGGLALIVGLSYMEARKTHKQIKKGEAQWVFLKKDKKK* |
Ga0114974_104832682 | 3300009183 | Freshwater Lake | MWLENNFKSIMNAGLALIIGLSALGARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0151620_10205974 | 3300011268 | Freshwater | MWLRNNFNLVIIASLGLIAGLSCLEARKTHKEIKKGEAQWLLKKKNKK* |
Ga0151620_12328052 | 3300011268 | Freshwater | MWIRDNFNLVMIASLTLILGLSYSEGRKTHKEIKKGEAQWLLKKKNK |
Ga0153799_10383413 | 3300012012 | Freshwater | MWLQNNFNWVMIAGLTLIIGLSVGEARKTHRKIKKGEPKWL* |
Ga0153801_10062638 | 3300012017 | Freshwater | MWLQNNFNWVMIAGLTLIIGLSVGDARKTHKEIKKGEAQWLLKKKKK* |
Ga0164293_100447557 | 3300013004 | Freshwater | MWLQNNFKLVMIGGLALILGLSFIEARQTHKEIKKGEAQWVLWKKHKKNK* |
Ga0164293_100690067 | 3300013004 | Freshwater | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKNK* |
Ga0164293_103634202 | 3300013004 | Freshwater | MWIRNNFNLVMIAGLTLILGLSYSETRKTHKEIKKGEAQWLLK |
Ga0164293_106443041 | 3300013004 | Freshwater | QMWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKKK* |
Ga0164292_104251812 | 3300013005 | Freshwater | MWLQNNFKLVMIGGLALILGLSFMGAKKTHKEIKKGEAQWLLKKKK* |
Ga0164292_106018682 | 3300013005 | Freshwater | MWLQNNFKLVMIGGLTLILGLSYMEAKKTHKQIKKGEAQWLLKKKKK* |
(restricted) Ga0172367_100815893 | 3300013126 | Freshwater | MWIQNNFKLVLIASLVLIAGLSYSEARKTHKEIKKGEAQWLLKKKKK* |
Ga0177922_106149874 | 3300013372 | Freshwater | MWLQNNFKLVMIGGLTLILGLSYMGARQTHKQIKKGEAQWLLKKKKK* |
Ga0181338_10464382 | 3300015050 | Freshwater Lake | MWLQNNFKLVMIGGLALILGLSFMGARKTHREIKKGEAQWLLKKKK* |
Ga0181347_11109423 | 3300017722 | Freshwater Lake | MWLQNNFKLVMIGGLTLILGLSYMGARQTHKQIKKGEAQWLLKKKKK |
Ga0181344_11857212 | 3300017754 | Freshwater Lake | MIGGLTLILGLSFMEARKTHKQIKKGEAQWLLKKKK |
Ga0181357_12168541 | 3300017777 | Freshwater Lake | QRVGLRSINYISGMWLQNNFKLVMIGGLALILGLSFMGARKTHKEIKKGEAQWLLKKKK |
Ga0181349_11282211 | 3300017778 | Freshwater Lake | MWLQNNFNLVMIAGLTLIIGLSVGGARKTHKEIKKG |
Ga0181349_12081552 | 3300017778 | Freshwater Lake | MWLQNNFKSIMNAGLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0181349_12647831 | 3300017778 | Freshwater Lake | MIGGLALILGLSFMGARKTHKEIKKGEAQWLLKKKK |
Ga0181346_10864873 | 3300017780 | Freshwater Lake | MWLQNNFKLVMIGGLTLILGLSYMEARKTHKQIKKGEAQWLLKKKK |
Ga0181359_10320613 | 3300019784 | Freshwater Lake | MWLQNNFNWVMIAGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK |
Ga0181359_11885392 | 3300019784 | Freshwater Lake | MWLQNNFNLVMIAGLTLIIGLSVGDARKTHKEIKKGEAQWLLKKKKK |
Ga0211736_101780307 | 3300020151 | Freshwater | MWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKKK |
Ga0211736_108688522 | 3300020151 | Freshwater | MWLQNNFNLVMIAGLTLIIGLSVGGARKTHKEIKKGEAQWLLKKKKNK |
Ga0211726_107738901 | 3300020161 | Freshwater | QNNFNLVMIAGLTLIIGLSVGGARKTHKEIKKGEAQWLLKKKKK |
Ga0211726_109765442 | 3300020161 | Freshwater | MWIRNNFNLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLL |
Ga0211729_113178652 | 3300020172 | Freshwater | MWLQNNFKLVMIAGLTLILGLSFMEARKTHKEIKKGETQWLLKKKKNK |
Ga0211731_110594632 | 3300020205 | Freshwater | MWLQNNFKLVMIGGLALILGLSFMEARKTHKEIKKGEAQWLLKKKKNK |
Ga0222714_101444942 | 3300021961 | Estuarine Water | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKKK |
Ga0222714_104768222 | 3300021961 | Estuarine Water | MWLRNNFNLVIIASLGLIAGLSCLEARKTHKEIKKGEAQWLLKKKNKK |
Ga0222714_106799371 | 3300021961 | Estuarine Water | MWLQNNFKLVMIGGLALIVGLSCMEARKTHKQIKKGEAQWVF |
Ga0222712_101718353 | 3300021963 | Estuarine Water | MIAGLTLIIGLSVGGARKTHKEIKKGEAQWLLKKKKNK |
Ga0222712_106775532 | 3300021963 | Estuarine Water | MIGGLTLILGLSYMEARKTHKQIKKGEAQWLLKKNK |
Ga0222712_107870322 | 3300021963 | Estuarine Water | MWLQNNFKLVMIGGLALILGLSFMGARKTHKEIKKGEAQWLLKKKK |
Ga0222712_108370212 | 3300021963 | Estuarine Water | MWLQNNFKLVMIGGLALIVGLSYMEARKTHKQIKKGEAQWVFLKKDKKK |
Ga0181351_10989013 | 3300022407 | Freshwater Lake | QNNFKLVMIGGLTLILGLSYMGARQTHKQIKKGEAQWLLKKKKK |
Ga0214923_100009314 | 3300023179 | Freshwater | MWLENNFKSIMNAGLALIIGLSALGARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0244775_1000143947 | 3300024346 | Estuarine | MWLQNNFKSIMNVGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKKK |
Ga0244775_1001632013 | 3300024346 | Estuarine | MWLQNNFKLVMIGSLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0244775_105556572 | 3300024346 | Estuarine | MWLQNNFKSIMNAGLALIIGLSALGAKQTHKEIKKGEAQWVLWKKHKKNK |
Ga0244776_101239102 | 3300024348 | Estuarine | MWIRDNFNLVMIAGLTLILGLSYSEGRKTHKQIKKGEAQWLLKKKNKK |
Ga0244776_109211952 | 3300024348 | Estuarine | MWLQNNFKSIMNAGLVLILGLSALGARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0208307_10531881 | 3300027211 | Estuarine | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKK |
Ga0208164_10211892 | 3300027224 | Estuarine | MWLQNNFKLVMIGGLALILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0208923_10390502 | 3300027320 | Estuarine | MWLQNNFKSIMNAGLALIIGLSALGARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0247723_100158125 | 3300028025 | Deep Subsurface Sediment | MWLQNNFKLVMIGGLTLILGLSFMGARKTHKEIKKGEAQWLLKKKK |
Ga0247723_10092972 | 3300028025 | Deep Subsurface Sediment | MWLQNNFKLVMIGGLALIVGLSFMEARKTHKEIKKGEAQWLLKKKKK |
Ga0247723_10175056 | 3300028025 | Deep Subsurface Sediment | MWLQNNFNLVMIGGLTLILGLSFMGARQTHKEIKKGEAQWLLKKKNKK |
Ga0247723_10595711 | 3300028025 | Deep Subsurface Sediment | MWLQNNFKLVMIGGLALIIGLSYMEARKTHKQIKKGEAQWLLKKNKKK |
Ga0247723_10837381 | 3300028025 | Deep Subsurface Sediment | MWLQNNFNLVMIGGLTLILGLSFMGARQTHKEIKK |
Ga0135211_10024612 | 3300029293 | Marine Harbor | MRLRNNFNLVMIASLTLILGLSVGGARKTHKEIKKGEAQWLLKKKKK |
Ga0315291_106011863 | 3300031707 | Sediment | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWVLWKKHKKNK |
Ga0315293_101294691 | 3300031746 | Sediment | MWLQNNFKLVMIGGLALILGLGFMGARKTHKEIKKGEAQWLLKKKK |
Ga0315293_101507772 | 3300031746 | Sediment | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLKKKKNK |
Ga0315907_105433113 | 3300031758 | Freshwater | MWLQNNFKLVMIGGLALIVGLSFMEARKTHKEIKKGEAQWVFLKKDKKK |
Ga0315899_111099552 | 3300031784 | Freshwater | MWLQNNFNLVMIVGLTLIIGLSVGEARKTHKEIKKGEAQWLLKKKKK |
Ga0315904_1000916531 | 3300031951 | Freshwater | ENINYIKVIMWLQNNFNLVMIAGLTLIIGLSVGGARKTHKEIKKGEAQWLLKKKKK |
Ga0315294_115857691 | 3300031952 | Sediment | MWLQNNFKLVMISGLALILGLSFMEARQTHKEIKKGEAQWLLKKKK |
Ga0315274_116997462 | 3300031999 | Sediment | MWLQNNFKLVMIGGLALILGLSFMEARQTHKEIKKGEAQWLLKKKK |
Ga0315905_100460807 | 3300032092 | Freshwater | MIGGLALIVGLSFMEARKTHKEIKKGEAQWVFLKKDKKK |
Ga0315903_108032631 | 3300032116 | Freshwater | NNFKLVMIGGLALIVGLSYMEARKTHKEIKKGEAQWLLKKKKKIKYVD |
Ga0315283_116665401 | 3300032164 | Sediment | MWLQNNFKLVMIGGLALILGLSFMEARQTHKQIKKGEAQWLLK |
Ga0334722_101032363 | 3300033233 | Sediment | MWLQNNFKSIMNAGLALILGLSFIEARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0334994_0336182_256_399 | 3300033993 | Freshwater | MWLQNNFKLVMIGGLTLILGLSCMEARKTHKQIKKGEAQWLLKKKKK |
Ga0334994_0388025_377_523 | 3300033993 | Freshwater | MWLQNNFKLVMIGGLALILGLSFMEARQTHKEIKKGEAQWLLKKKKNK |
Ga0335005_0077188_199_345 | 3300034022 | Freshwater | MWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKNKK |
Ga0334987_0840570_309_482 | 3300034061 | Freshwater | MWLRDNFNLVMIGGLTLILGLSFMGARKTHKEIKKGDAEWVFLKKDNKNKIHKKVSK |
Ga0335012_0241897_346_498 | 3300034093 | Freshwater | MWLQNNFKLVMNVGLTLILGLSFMEARQTHKEIKKGEAQWVLWKKHKKNK |
Ga0335068_0099548_1458_1631 | 3300034116 | Freshwater | YNILLVLKQMWIQNNFKLVMIAGLTLILGLSYSEARKTHKEIKKGEAQWLLKKKNKK |
Ga0335068_0556388_332_478 | 3300034116 | Freshwater | MWLQNNFKLVMIGGLTLILGLSYMEARQTHKEIKKGEAQWLLKKKKNK |
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