Metagenome / Metatranscriptome Family F092048

Basic Information
Family ID	F092048
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	62 residues
Representative Sequence	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Number of Associated Samples	91
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Viruses
% of genes with valid RBS motifs	48.15 %
% of genes near scaffold ends (potentially truncated)	47.66 %
% of genes from short scaffolds (< 2000 bps)	69.16 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Predicted Viral (40.187 % of family members)
NCBI Taxonomy ID	10239 (predicted)
Taxonomy	All Organisms → Viruses → Predicted Viral

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (20.561 % of family members)
Environment Ontology (ENVO)	Unclassified (62.617 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (74.766 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1DelMOSum2010_100598545 2DelMOSum2010_102215083 3BBAY94_100448031 4JGI20151J14362_101529601 5JGI24003J15210_100391784 6JGI25132J35274_10051083 7JGI25128J35275_100451910 8BBAY88ST_10674672 9Ga0065183_103081622 10Ga0066611_102959953 11Ga0069002_100303325 12Ga0078747_1410884 13Ga0075462_100066123 14Ga0075462_100982615 15Ga0070744_100304366 16Ga0098038_10249776 17Ga0098038_10281015 18Ga0098038_12341593 19Ga0098054_12922293 20Ga0070749_100853966 21Ga0070750_101066542 22Ga0070746_100305523 23Ga0098060_11248141 24Ga0098050_10868931 25Ga0075463_102145823 26Ga0070752_13816133 27Ga0099847_10213164 28Ga0102816_11226821 29Ga0102960_10075961 30Ga0102960_10810032 31Ga0102963_101853113 32Ga0102810_11392271 33Ga0102957_12681381 34Ga0115549_10599621 35Ga0118687_102179383 36Ga0115548_12146601 37Ga0115558_13453572 38Ga0115565_101543343 39Ga0129286_100463501 40Ga0098043_10570824 41Ga0098043_10657681 42Ga0098049_10567355 43Ga0118731_1113602415 44Ga0160423_1001594510 45Ga0182091_10532471 46Ga0181369_10202572 47Ga0181421_10981981 48Ga0181402_10181763 49Ga0187217_13105401 50Ga0181430_10086341 51Ga0181607_105980543 52Ga0193979_10026352 53Ga0193956_10166867 54Ga0194024_11202612 55Ga0194032_10028731 56Ga0181596_103388381 57Ga0211504_10519303 58Ga0211558_100073749 59Ga0211546_100293815 60Ga0213862_1000008926 61Ga0213862_101287002 62Ga0213858_100782174 63Ga0206123_104520951 64Ga0222717_106293841 65Ga0222718_100462733 66Ga0222716_1000851014 67Ga0222716_1002163915 68Ga0222715_100218474 69Ga0222719_100842314 70Ga0222719_104323981 71Ga0196883_10309883 72Ga0212027_10354431 73Ga0196903_10438871 74Ga0196887_10347671 75Ga0196899_10905341 76Ga0208157_100022025 77Ga0208157_10140321 78Ga0209535_102021710 79Ga0209535_11995971 80Ga0209232_10283843 81Ga0209336_100248011 82Ga0209634_11043881 83Ga0209645_10121493 84Ga0208004_10139061 85Ga0208134_10940113 86Ga0209305_10626971 87Ga0208899_12421482 88Ga0208767_10521964 89Ga0208425_10909661 90Ga0208425_10965914 91Ga0208645_10591848 92Ga0209962_10675391 93Ga0209961_10305311 94Ga0209951_10269122 95Ga0209929_10056791 96Ga0255055_106864321 97Ga0183748_100031631 98Ga0183757_10050344 99Ga0183757_10153646 100Ga0315320_102904054 101Ga0315330_100618578 102Ga0316205_100779261 103Ga0316205_102569891 104Ga0316205_103010041 105Ga0316202_105492813 106Ga0348336_056030_1427_1579 107Ga0348336_147437_546_704
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1DelMOSum2010_100598545 2JGI25132J35274_10051083 3JGI25128J35275_100451910 4Ga0098060_11248141 5Ga0102816_11226821 6Ga0102960_10810032 7Ga0222716_1000851014
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88 1DelMOSum2010_100598545 2JGI25132J35274_10051083 3JGI25128J35275_100451910 4Ga0098060_11248141 5Ga0102816_11226821 6Ga0102960_10810032 7Ga0222716_1000851014
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 41.94% Coil/Unstructured: 58.06%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04098	Rad52_Rad22	11.21
PF00145	DNA_methylase	6.54
PF00856	SET	2.80
PF05869	Dam	2.80
PF05063	MT-A70	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	6.54
COG4725	N6-adenosine-specific RNA methylase IME4	Translation, ribosomal structure and biogenesis [J]	1.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.03 %
Unclassified	root	N/A	28.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	30.84 %
Unclassified	root	N/A	28.97 %
Viruses	superkingdom	All Organisms → Viruses	40.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.84 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Unclassified	root	N/A	28.97 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.61 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	18.69 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.87 %
Unclassified	root	N/A	28.97 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.87 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.61 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	18.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Unclassified	root	N/A	28.97 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.87 %
Phycisphaerae	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae	18.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	5.61 %
Unclassified	root	N/A	28.97 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	5.61 %
Unclassified	root	N/A	28.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.87 %
unclassified Phycisphaerae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae	18.69 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	18.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Unclassified	root	N/A	28.97 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	5.61 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.87 %
Phycisphaerae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	18.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	40.19 %
Rhodospirillaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	5.61 %
Unclassified	root	N/A	28.97 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300027881\|Ga0255055_10686432	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium	546	Open in IMG/M
3300000101\|DelMOSum2010_c10059854	All Organisms → Viruses → Predicted Viral	1839	Open in IMG/M
3300000101\|DelMOSum2010_c10221508	Not Available	617	Open in IMG/M
3300000949\|BBAY94_10044803	All Organisms → Viruses → Predicted Viral	1231	Open in IMG/M
3300001346\|JGI20151J14362_10152960	Not Available	688	Open in IMG/M
3300001460\|JGI24003J15210_10039178	All Organisms → Viruses → Predicted Viral	1660	Open in IMG/M
3300002483\|JGI25132J35274_1005108	All Organisms → Viruses → Predicted Viral	3321	Open in IMG/M
3300002488\|JGI25128J35275_1004519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	3859	Open in IMG/M
3300002500\|BBAY88ST_1067467	Not Available	665	Open in IMG/M
3300004113\|Ga0065183_10308162	Not Available	724	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Host-Associated	Host-Associated	1.87%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	1.87%
Aquatic	Environmental → Aquatic	98.13%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Green Algae	Host-Associated → Algae → Green Algae	1.87%
Marine	Environmental → Aquatic → Marine	85.05%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	7.48%
Sediment	Environmental → Aquatic → Sediment	1.87%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	28.97%
Ectosymbionts	Host-Associated → Algae → Green Algae → Ectosymbionts	1.87%
Inlet	Environmental → Aquatic → Marine → Inlet	0.93%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	6.54%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.74%
Oceanic	Environmental → Aquatic → Marine → Oceanic	20.56%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.61%
River	Environmental → Aquatic → Freshwater → River	2.80%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	7.48%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Strait	Environmental → Aquatic → Marine → Strait	3.74%
Unclassified	Environmental → Aquatic → Marine → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.87%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.80%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	5.61%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	23.36%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	19.63%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	14.02%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	7.48%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	20.56%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.87%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.93%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	6.54%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.87%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat	0.93%
Macroalgal Surface	Host-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface	1.87%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	19.63%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	6.54%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.87%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.93%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.93%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	3.74%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	4.67%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	1.87%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	5.61%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.80%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	3.74%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	2.80%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.87%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.87%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.93%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.93%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.87%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental	Open in IMG/M
3300000949	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY94	Host-Associated	Open in IMG/M
3300001346	Pelagic Microbial community sample from North Sea - COGITO 998_met_01	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300002483	Marine viral communities from the Pacific Ocean - ETNP_6_30	Environmental	Open in IMG/M
3300002488	Marine viral communities from the Pacific Ocean - ETNP_2_60	Environmental	Open in IMG/M
3300002500	Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBA88_21-ST	Host-Associated	Open in IMG/M
3300004113	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (version 2)	Environmental	Open in IMG/M
3300004277	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200m	Environmental	Open in IMG/M
3300005214	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100598545	3300000101	Marine	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
DelMOSum2010_102215083	3300000101	Marine	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI*
BBAY94_100448031	3300000949	Macroalgal Surface	MIKIDMPRDCRQIVVAFNKSFRIFSSTIEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
JGI20151J14362_101529601	3300001346	Pelagic Marine	DCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
JGI24003J15210_100391784	3300001460	Marine	MIKIDMPRDCFQIVVAFNRSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIALLKEQTVQYKHN*
JGI25132J35274_10051083	3300002483	Marine	MFIINYMIKLDMPRECRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI*
JGI25128J35275_100451910	3300002488	Marine	MIKLDMPVNCRQIVVSFNRSFRIFPSTNDVERYCRHHKLEVLGAESQLGSYIVTVKKADSTI*
BBAY88ST_10674672	3300002500	Macroalgal Surface	MPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0065183_103081622	3300004113	Pelagic Marine	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVEGYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0066611_102959953	3300004277	Marine	MIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0069002_100303325	3300005214	Natural And Restored Wetlands	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0078747_1410884	3300005820	Marine Sediment	CRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0075462_100066123	3300006027	Aqueous	MVKLDMPIDCRQIVVAFNKSFRIFPSTYDVERFCRRNRLEVVYTESQFGSFIITLKRADSTI*
Ga0075462_100982615	3300006027	Aqueous	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRAD
Ga0070744_100304366	3300006484	Estuarine	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0098038_10249776	3300006735	Marine	MFIINYMIKLDMPVNCRQIVVSFNRSFRIFPSIDDVERYCRHHKLEVLGAESQLGSYIVTVKKADSTI*
Ga0098038_10281015	3300006735	Marine	MIKIDMPIDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0098038_12341593	3300006735	Marine	MIKIDMPRDCRQIVVAFNKSFRIFSGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0098054_12922293	3300006789	Marine	MIKIDMPIDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0070749_100853966	3300006802	Aqueous	MVKLNMPIDCRQIVVAFNKSFRIFPSTYDVERFCRRNRLEVVYTESQFGSFIITLKRADSTI*
Ga0070750_101066542	3300006916	Aqueous	MFIINYMIKLDMPIDCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI*
Ga0070746_100305523	3300006919	Aqueous	MIKLDMPRECRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI*
Ga0098060_11248141	3300006921	Marine	MIKIDMPIDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQM
Ga0098050_10868931	3300006925	Marine	MIKIDMPIDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFI
Ga0075463_102145823	3300007236	Aqueous	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI*
Ga0070752_13816133	3300007345	Aqueous	MIKIDMPQDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMG
Ga0099847_10213164	3300007540	Aqueous	MPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0102816_11226821	3300008999	Estuarine	ESQISLHAIVNFCLYCNERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0102960_10075961	3300009000	Pond Water	MVKIDMPRDCFQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVT
Ga0102960_10810032	3300009000	Pond Water	MSNAILDMPLNCRQIVVSFNKSFSVFPSTNDVQRYCRYHKLEIVTAETQMGSYIITVKKQDNSL*
Ga0102963_101853113	3300009001	Pond Water	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIV
Ga0102810_11392271	3300009002	Estuarine	AIVNFCLYCNERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0102957_12681381	3300009027	Pond Water	SQISLHTIVNFCLYYNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0115549_10599621	3300009074	Pelagic Marine	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRAD
Ga0118687_102179383	3300009124	Sediment	SQISLHTIVNFCLYCNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0115548_12146601	3300009423	Pelagic Marine	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLK
Ga0115558_13453572	3300009449	Pelagic Marine	NERLFMIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0115565_101543343	3300009467	Pelagic Marine	LMIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0129286_100463501	3300009515	Sediment	LCNLLKLMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI*
Ga0098043_10570824	3300010148	Marine	MFIINYMIKLDMPVNCRQIVVSFNRSFRIFPSIDDVERYCRHHKLEVLGAESQLGSYIVTVKKADSNI*
Ga0098043_10657681	3300010148	Marine	MIKLDMPTDCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI*
Ga0098049_10567355	3300010149	Marine	MPIDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0118731_1113602415	3300010392	Marine	VNFCLYCNERLLMIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI*
Ga0160423_1001594510	3300012920	Surface Seawater	MIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI*
Ga0182091_10532471	3300016766	Salt Marsh	VKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADST
Ga0181369_10202572	3300017708	Marine	MPRDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0181421_10981981	3300017741	Seawater	SLHAIVNFCLYCNERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0181402_10181763	3300017743	Seawater	MSNAILDMPLNCRQIVVSFNKSFSVFPSTNDVQIYCRYHKLEIVTAETQMGSYIITVKKQDNSL
Ga0187217_13105401	3300017770	Seawater	ESQISLHAIVNFCLYCNERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0181430_10086341	3300017772	Seawater	NERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0181607_105980543	3300017950	Salt Marsh	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0193979_10026352	3300019704	Sediment	MVKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0193956_10166867	3300019754	Freshwater Microbial Mat	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0194024_11202612	3300019765	Freshwater	MVKLDMPIDCRQIVVAFNKSFRIFPSTYDVERFCRRNRLEVVYTESQFGSFIITLKRADSTI
Ga0194032_10028731	3300019938	Freshwater	IVNFCLYCNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0181596_103388381	3300020177	Salt Marsh	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVT
Ga0211504_10519303	3300020347	Marine	MIKIDMPRDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0211558_100073749	3300020439	Marine	MIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0211546_100293815	3300020462	Marine	MSNAILDMPLNCRQIVVSFNKSFSVFPSTNDVQRYCRYHKLEIVTAETQMGSYIITVKKQDNSL
Ga0213862_1000008926	3300021347	Seawater	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0213862_101287002	3300021347	Seawater	MIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCNNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0213858_100782174	3300021356	Seawater	VFIINYMIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0206123_104520951	3300021365	Seawater	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIV
Ga0222717_106293841	3300021957	Estuarine Water	CNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRQNRLEVVSQESQMGSFIVTLKRADSTI
Ga0222718_100462733	3300021958	Estuarine Water	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0222716_1000851014	3300021959	Estuarine Water	MFIMNYMIKLNMPLECRQIVVSFNRSFILFPSTHSVERYCRQNRLEIINTESQLGNFIITVKRADSNI
Ga0222716_1002163915	3300021959	Estuarine Water	MVKIDMPLDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0222715_100218474	3300021960	Estuarine Water	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0222719_100842314	3300021964	Estuarine Water	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRQNRLEVVSQESQMGSFIVTLKRADSTI
Ga0222719_104323981	3300021964	Estuarine Water	MVKIDMPRDCFQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0196883_10309883	3300022050	Aqueous	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFI
Ga0212027_10354431	3300022168	Aqueous	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQM
Ga0196903_10438871	3300022169	Aqueous	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKR
Ga0196887_10347671	3300022178	Aqueous	KIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0196899_10905341	3300022187	Aqueous	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADS
Ga0208157_100022025	3300025086	Marine	MIKIDMPIDCRQIVVAFNKSFRIFPGTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0208157_10140321	3300025086	Marine	MFIINYMIKLDMPVNCRQIVVSFNRSFRIFPSIDDVERYCRHHKLEVLGAESQLGSYIVTVKKADSTI
Ga0209535_102021710	3300025120	Marine	MIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209535_11995971	3300025120	Marine	MIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADS
Ga0209232_10283843	3300025132	Marine	MFIINYMIKLDMPVNCRQIVVSFNRSFRIFPSTNDVERYCRHHKLEVLGAESQLGSYIVTVKKADSTI
Ga0209336_100248011	3300025137	Marine	NERLFMIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209634_11043881	3300025138	Marine	MIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVTLK
Ga0209645_10121493	3300025151	Marine	MFIINYMIKLDMPRECRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0208004_10139061	3300025630	Aqueous	RLFMIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADSTI
Ga0208134_10940113	3300025652	Aqueous	MIKIDMPRDCSQIVVAFNKSFRIFSGTIEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209305_10626971	3300025712	Pelagic Marine	QISLHAIVNFCLYYNERLFMIKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0208899_12421482	3300025759	Aqueous	MFIINYMIKLDMPIDCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0208767_10521964	3300025769	Aqueous	MIKLDMPRECRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESVMGSYIVTVKRADSYI
Ga0208425_10909661	3300025803	Aqueous	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRADS
Ga0208425_10965914	3300025803	Aqueous	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSF
Ga0208645_10591848	3300025853	Aqueous	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIVTLKRA
Ga0209962_10675391	3300026125	Water	FCLYFNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209961_10305311	3300026130	Water	SQISLHTIVNFCLYYNERLLMVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209951_10269122	3300026138	Pond Water	MPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0209929_10056791	3300026187	Pond Water	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
(restricted) Ga0255055_106864321	3300027881	Seawater	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADS
Ga0183748_100031631	3300029319	Marine	MFILNHMIKLDMPSHCRQIVVFFNKSYRIFPSTNDVQRYCRNNKLEIVSQESQMGSYIITVKKADSTI
Ga0183757_10050344	3300029787	Marine	MIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESFMGSFIVTVKRADSYI
Ga0183757_10153646	3300029787	Marine	MFIINYMIKLDMPTNCRHIVVAFNKSHRIFPSTYDVERFCKNNKLEIVGTESFMGSFIVTVKRADSYI
Ga0315320_102904054	3300031851	Seawater	MIKIDMPRDCRQIVVAFNKSFRIFPSTIQVERYCRRNRLEVVSQESQMGSFIVT
Ga0315330_100618578	3300032047	Seawater	MFIINYMIKLDMPVNCRQIVVSFNRSFRIFPSTNDVERYCRHHKLEVLGAESQLGSYIVTVKKADSTL
Ga0316205_100779261	3300032257	Microbial Mat	PRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMGSFIVTLKRADSTI
Ga0316205_102569891	3300032257	Microbial Mat	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQESQMG
Ga0316205_103010041	3300032257	Microbial Mat	MIKIDMPRDCSQIVVAFNKSFRIFSGTIEVERYCRRNRLEVVSQESQMGSFIVTLKRADS
Ga0316202_105492813	3300032277	Microbial Mat	MIKIDMPRDCSQIVVAFNKSFRIFSGTIEVERYCRRNRLEVVSQESQMGSF
Ga0348336_056030_1427_1579	3300034375	Aqueous	MVKIDMPRDCRQIVVAFNRSFRIFPSTSEVERYCRRNRLEVVSQENQMGSF
Ga0348336_147437_546_704	3300034375	Aqueous	MIKIDMPRDCRQIVVAFNKSFRIFPSTSEVERYCRRNRLEVVSQENQMGSFIV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters