Metagenome / Metatranscriptome Family F092012

Overview

Basic Information

• Family ID: F092012
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 44 residues
• Representative Sequence: MPRLRTIAIAAVVVVVTDVTWDGTSLHISFGWPGRKPLASFVFP
• Number of Associated Samples: 86
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 48.60 %
• % of genes near scaffold ends (potentially truncated): 23.36 %
• % of genes from short scaffolds (< 2000 bps): 89.72 %
• Associated GOLD sequencing projects: 79
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (58.879 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.888 % of family members)
• Environment Ontology (ENVO): Unclassified (25.234 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.794 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 18.06%
  β-sheet: 20.83%
  Coil/Unstructured: 61.11%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01042	Ribonuc_L-PSP	5.61
PF10988	DUF2807	3.74
PF00196	GerE	2.80
PF04828	GFA	2.80
PF00768	Peptidase_S11	2.80
PF12840	HTH_20	2.80
PF00583	Acetyltransf_1	1.87
PF07992	Pyr_redox_2	1.87
PF01391	Collagen	1.87
PF00378	ECH_1	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	5.61
COG3791	Uncharacterized conserved protein	Function unknown [S]	2.80
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	2.80
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.93
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG4799	Acetyl-CoA carboxylase, carboxyltransferase component	Lipid transport and metabolism [I]	0.93
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.93
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.88 %
Unclassified	root	N/A	41.12 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.88 %
Unclassified	root	N/A	41.12 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.88 %
Unclassified	root	N/A	41.12 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.87 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.93 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.12 %
Unclassified	root	N/A	41.12 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.45 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.87 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.87 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Unclassified	root	N/A	41.12 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.56 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.87 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Unclassified	root	N/A	41.12 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.87 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.87 %
Unclassified	root	N/A	41.12 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	13.08 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.87 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Unclassified	root	N/A	41.12 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Couchioplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Unclassified	root	N/A	41.12 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	13.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.87 %
Chelatococcus reniformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus reniformis	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.87 %
Couchioplanes caeruleus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Couchioplanes → Couchioplanes caeruleus	0.93 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1.87 %
Unclassified	root	N/A	41.12 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2166559005|cont_contig02944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2350
2170459003|FZN2CUW02G0JZR	Not Available	508
3300000364|INPhiseqgaiiFebDRAFT_101691267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1176
3300000956|JGI10216J12902_109883761	Not Available	609
3300000956|JGI10216J12902_112067772	Not Available	627
3300002568|C688J35102_117989324	Not Available	521
3300002568|C688J35102_120284192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	967
3300002568|C688J35102_120760563	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1506
3300004081|Ga0063454_100386485	Not Available	928
3300004157|Ga0062590_101207806	Not Available	738

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.93%
Environmental	Environmental	66.36%
Host-Associated	Host-Associated	32.71%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	0.93%
Modeled	Engineered → Modeled	0.93%
Plants	Host-Associated → Plants	32.71%
Terrestrial	Environmental → Terrestrial	65.42%

Category

Habitat	Taxonomy	Distribution
Peat	Environmental → Terrestrial → Peat	3.74%
Rhizoplane	Host-Associated → Plants → Rhizoplane	15.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.82%
Sediment	Environmental → Aquatic → Sediment	0.93%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.93%
Soil	Environmental → Terrestrial → Soil	61.68%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.54%
Loam	Environmental → Terrestrial → Soil → Loam	14.95%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.79%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.74%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	7.48%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	3.74%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Lake Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Lake Sediment	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.67%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.74%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.80%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.67%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2166559005	Simulated microbial communities from Lyon, France	Engineered
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0944.00000260	2166559005	Simulated	MPRLRTLAFVAAVVVLTDVTWDGTTLHVSFGWPGRKPIASFEFP
E4A_02808100	2170459003	Grass Soil	MARPRSLAIAAVVLVVVTDVTWDGKKLRVSFGWPGRKPIASFVFP
INPhiseqgaiiFebDRAFT_1016912673	3300000364	Soil	MPRLRTVVIIAVVVVVTDVTWDGTSLHISFGWPRRKPIASFVFP*
JGI10216J12902_1098837611	3300000956	Soil	MPRLRTIAIVAAVVVLCDVSWDGNSLHVSFGWPGRKRIVQFSFP*
JGI10216J12902_1120677723	3300000956	Soil	VPRLRTIAVVAVIVVVVTDVTWDGASLRISVGWPGRRRIAQFVFP*
C688J35102_1179893241	3300002568	Soil	MPRLRTVAVAVVVVVMTDVTWDGTSLRISIGWPGRRPLASFVVP*
C688J35102_1202841922	3300002568	Soil	MIGSMPRLRTIAIAAVVVVVTDVTWDGTSLRISVGWPGRKPVASVVFP*
C688J35102_1207605633	3300002568	Soil	MPRFRTIAVAVAIVVITDVTWDGTSLHISIGWPRRKPIASFVFP*
Ga0063454_1003864853	3300004081	Soil	MLRLRTVAVAVVVVAMTDVTWDGTSLRISIGWPGRKPIASFAFP*
Ga0062590_1012078061	3300004157	Soil	MPRLRTIAIAAVAIVVTDVTWDGTSLRISFGWPGRRPIASFVFP*
Ga0063356_1006741262	3300004463	Arabidopsis Thaliana Rhizosphere	MPRLRTIAILAVIVVVTDVTWDGTSLHISFGWPGRRRIVHFVFP*
Ga0062594_1032073232	3300005093	Soil	MPRLRTIAIAAVVVVVVTDVTWDGTSLHISFGWPGRKPIASFLFP*
Ga0070683_1008756811	3300005329	Corn Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLRISFGWPGRKPIASFVFP*
Ga0066388_1061102741	3300005332	Tropical Forest Soil	MPRLRTIAIVAAIVVVTDVTWDGTSLHVSFGWPGRRRIVRFVFP*
Ga0068868_1002217751	3300005338	Miscanthus Rhizosphere	PATCEDPIMPRLRTIVIVAAVIAATDVTWDGASLRISFGWPGRKPIASFVFP*
Ga0068868_1010848372	3300005338	Miscanthus Rhizosphere	MPRFRTIALAALVVVVTDVTWDGTSLHVSFGMPRRKPLVSLVFP*
Ga0070671_1002870393	3300005355	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASLVFP*
Ga0070709_116060242	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLRTIAIVAVVAVVVTDVTWDDTSLRISIGWPGRKRIVQLAFP*
Ga0070713_1012475992	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPRLRTLVILAVVVVVTDVTWDGTSLHISFGWPRRKPIASFVFP*
Ga0070710_105887732	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VPRLRTIAIVAVVAVVVTDVTWDDTSLRISIGWPGRKPIIRFAFP*
Ga0070678_1016972662	3300005456	Miscanthus Rhizosphere	MPRRRTIAIAAVLAVVVTDVTWDGTSLRISIGWPGRRPIASFVFP*
Ga0070664_1009897532	3300005564	Corn Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP*
Ga0066903_1002678212	3300005764	Tropical Forest Soil	VVGAVVVLVVTDITWDGTSLRISFGWPGRKPIVSFVFP*
Ga0066903_1005976623	3300005764	Tropical Forest Soil	VVGAVVVLVVTDVTWDGTSLRISFGWPGRKPILSFVFP*
Ga0066903_1011940262	3300005764	Tropical Forest Soil	TDKIVSVPRLRTVAVATVVFLVITDVTWNGSSLSISFGWPGRRPIASFVFP*
Ga0066903_1053541141	3300005764	Tropical Forest Soil	VPRLRTVAVVAAVVVVVTDVTWDGTSLRVSFGWPGRKPLASFAFPSR
Ga0068863_1012262471	3300005841	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHLSFGLPRRKPLVSLVFP*
Ga0068858_1018650342	3300005842	Switchgrass Rhizosphere	MLARVDPNCEDHPNMPRLRTIAVAAVIVVVVTDVTWDGTSLHISFGWPGRRRLASFVFP*
Ga0070717_117412221	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VPRVRTIAIVAAVVVLTDVTWDGTSLRVSFGWPKRKPVLSLVFP*
Ga0066696_105083572	3300006032	Soil	MPRLGTIAIAVVVVVVTDVTWDGTSLVISFGWPGRKPIASFVFP*
Ga0074055_112665552	3300006573	Soil	VIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0075425_1000961693	3300006854	Populus Rhizosphere	MVVAAVVVVITDVTWDGTSLRISFGLPRRKPIASFVFP*
Ga0075434_1000727624	3300006871	Populus Rhizosphere	MVVAAVVVVITDVTWDGTSLRISFGLPRRKPIASFAFP*
Ga0075426_101712461	3300006903	Populus Rhizosphere	IAAVVIVITDVTWDGTSLHISLGWPGRRRLVRLVIP*
Ga0075424_1004558033	3300006904	Populus Rhizosphere	VPRLRTLAIAAVVIVITDVTWDGTSLHISLGWPGRRRLVRLVIP*
Ga0105245_100496541	3300009098	Miscanthus Rhizosphere	APAPPTCEDPIMPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP*
Ga0105245_118526581	3300009098	Miscanthus Rhizosphere	MPRFRTIALAALVVVVSDVTWDGTSLHVSFGLPRRKPLVSLVFP*
Ga0117941_10596631	3300009120	Lake Sediment	MPRLRTVVLAAVVVVVTDVTWDGKVLTVSFGWPGRKPLASFVLP*
Ga0105243_115926322	3300009148	Miscanthus Rhizosphere	MPRIRTIAIPAVVILVTDVTWDVTSLRISIGWPGRRPIASFVLP*
Ga0075423_113741131	3300009162	Populus Rhizosphere	VPRLRTLVIAAVVIVITDVTWDGTSLHISLGWPGRRRL
Ga0105242_109635701	3300009176	Miscanthus Rhizosphere	MPRLRTVAILAVVLVVTDVTWDGTSLRISFGWPRRKP
Ga0105238_119848642	3300009551	Corn Rhizosphere	GPEASSMPRRRTIAIAAVLAVVVTDVTWDGTSLRISIGWPGRRPIASFMFP*
Ga0126307_100056432	3300009789	Serpentine Soil	MIAIAAVVVVVTDVTWDGKSLRISVGWPGRRPIASFLFP*
Ga0126307_100302467	3300009789	Serpentine Soil	VPRLRTLALVALVIVVTDVTWDGTSLHISFGWPGRRPLASFVFP*
Ga0126304_107046242	3300010037	Serpentine Soil	VIAAVVVVMTDVTWDGTSLHVSFGWPRRKRLIQFVIP*
Ga0126314_103561991	3300010042	Serpentine Soil	VIAAVVVVMTDVTWDGTSLHVSFGWPRRKRLVQFVIP*
Ga0126372_101536873	3300010360	Tropical Forest Soil	VVVLVVTDVTWDGTSLRISFGWPGRKPILSFVFP*
Ga0126381_1017227803	3300010376	Tropical Forest Soil	MPRLRTIAVAVVVIVVTDVTWDDGSLRISFGWPGRKPI
Ga0126381_1042796842	3300010376	Tropical Forest Soil	MPRLGTFAIAAAVVVLTDVTWDGTSLTIAFGWPGRRPLATVVFP*
Ga0137399_109197652	3300012203	Vadose Zone Soil	MPRLCTIAIAAMVVVVTDVTWDGTSLRISLGWPGRKPIASFVFP*
Ga0150985_1099774372	3300012212	Avena Fatua Rhizosphere	MLRLRTVAVAVVVVAVTDVTWDGTSLRISIGWPGRKPIVSFAFP*
Ga0157353_10503992	3300012496	Unplanted Soil	MPRLRTIAIAAVVVVVTDVTWDGTSLRISFGWPGRRPVASFVFP*
Ga0164300_103775702	3300012951	Soil	MPRFRTIALAALVVVVTDVTWDGTSLHVSFGLPRRKPLVSLVFP*
Ga0164298_105879231	3300012955	Soil	IAIVAVLVVVTDVTWDGTSLHVSFGWPGRKPVASFVLP*
Ga0164298_107744771	3300012955	Soil	MPRLRTIALATLVNVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0164303_102613182	3300012957	Soil	MPRLRTLVIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0164299_100700744	3300012958	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFMFP*
Ga0164299_111959772	3300012958	Soil	MPRLRTIVIAAVVAVVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0164301_103552163	3300012960	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFVFP*
Ga0164302_111775991	3300012961	Soil	MPRFRTIALAALVVVVTDVTWDGTSLHGSFGLPRRKPLVSLVFP*
Ga0134087_104346772	3300012977	Grasslands Soil	MPRFRTIAVAVAIVVITDVTWDGTSLHISIGWPRRKPIASFVF
Ga0164308_101281392	3300012985	Soil	MPRLRTLVIAAVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFS*
Ga0164304_115859831	3300012986	Soil	LRTLVIAVVVVAVTDVTWDDTSLRISFGWPGRKPLVSFVFP*
Ga0164305_101783222	3300012989	Soil	MPRLRTIAIVAVVVVVTDVTWDGTSLHISVGWPGRRRIVQLVFP*
Ga0164305_117589022	3300012989	Soil	MPRLRTIALATLVIVVTDVTWDGTSLHISIGWPGRTPLASFVFP*
Ga0157378_104825053	3300013297	Miscanthus Rhizosphere	MPRLRTIVIGAIVVAVTDVTWDGTSLHVSFGWPGRKPIASFVFP*
Ga0157378_124750152	3300013297	Miscanthus Rhizosphere	MPRLRTILIAAVVVVVTDVTWDGTSLHVSFGWPGRKPVASFVLP*
Ga0120123_10082631	3300013770	Permafrost	MPRLRSIAIVAVVVVVVSDVTWDGTSLLISIGWPGRTPLASFVFP
Ga0182019_108953251	3300014498	Fen	MTSTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPERRPIASFLFP*
Ga0132258_109816083	3300015371	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVACTDVTWDGTSLHISFGLPKRKPIASFVFP*
Ga0132258_111905894	3300015371	Arabidopsis Rhizosphere	MPRPLRIAIALAVLVVVTDVTWDGTSLHISFGLPGRKRIASIRLP*
Ga0132258_113014661	3300015371	Arabidopsis Rhizosphere	KDPLRMPRLRTIAIAAVIVVLTDVTWDGASLHVSFGLPGRRRIASFVFP*
Ga0132258_115089092	3300015371	Arabidopsis Rhizosphere	MPRARIIAFAAVALVVVTDVTWDGTSLHVSFGWPGRKPLASFVFP*
Ga0132258_120053733	3300015371	Arabidopsis Rhizosphere	MPRLRTIAIAAVVVVVTDVTWDGTSLHISFGWPGRKPLASFVFP*
Ga0132258_131417512	3300015371	Arabidopsis Rhizosphere	VVLVVVTDVTWDGTSLHVSFGWPGRKPLASFVFP*
Ga0132257_1034858851	3300015373	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVVCTDVTWDGTSLHISFGLPKRKPIASFVFP*
Ga0132255_1035999362	3300015374	Arabidopsis Rhizosphere	MPRLRTIAIAVVVVACTDVTWDGTSLHISFGLPKRKPLASFVFP*
Ga0163161_107480393	3300017792	Switchgrass Rhizosphere	AAVVVVVVTDVTWDGTSLRISIGWPGRTPIASFVFP
Ga0190265_116573092	3300018422	Soil	MPRLRTIAIVAVVVVLTDVTWDGTSLRISVGWPGRRRIVQIVFP
Ga0190270_101668352	3300018469	Soil	MPRFRTIAIVAVVVVLIDVTWDGTSLRISVGWPGRRRIVQIVFP
Ga0190274_100536592	3300018476	Soil	MPRLRTIAILAAIIVVTDVTWDGASLRISFGWPRRKPIASFVFP
Ga0126371_111643742	3300021560	Tropical Forest Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLVTLVFP
Ga0126371_124210631	3300021560	Tropical Forest Soil	VIVVTDVTWDGASLRISFGWPGRKPIASLVFPSSGS
Ga0247666_10044252	3300024323	Soil	MPRLGMIAIAAMVVVVTDVTWDGMSLHISVGWPGRRPIASFVFP
Ga0207705_109163642	3300025909	Corn Rhizosphere	TIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP
Ga0207687_108310811	3300025927	Miscanthus Rhizosphere	MPRLRTIVIVAAVIAATDVTWDGASLHISFGWPGRKPIASFVFP
Ga0207664_119944501	3300025929	Agricultural Soil	AEIRKDLGVPRLRTIAIVAAVAVVVTDVTWDDTSLRISIGWPGRKPIIRFAFP
Ga0207644_102310362	3300025931	Switchgrass Rhizosphere	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASLVFP
Ga0207709_109938612	3300025935	Miscanthus Rhizosphere	MPRIRTIAIPAVVILVTDVTWDVTSLRISIGWPGRRPIASFVLP
Ga0207661_104751192	3300025944	Corn Rhizosphere	MPRLRTIVIVAAFIAATDVTWDGASLRISFGWPGRKPIASFVFP
Ga0207703_123031651	3300026035	Switchgrass Rhizosphere	MLARVDPNCEDHPNMPRLRTIAVAAVIVVVVTDVTWDGTSLHISFGWPGRRRLASFVFP
Ga0307316_100222032	3300028755	Soil	VPRFRTVAVAAVVVLVITDVTWDGTSLRISFGWPRRKPIASFMFP
Ga0311334_119330681	3300029987	Fen	ASRQAPIRNMTNTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0311349_105037702	3300030294	Fen	MTNTASLRTIALAAVVVIVTDVTWDGTSLHISFGWPERRPIASFLFP
Ga0302323_1018235272	3300031232	Fen	LAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0307506_104068822	3300031366	Soil	MPRLRTIAIAAAVIVVTDVTWDGTSLHISFGWPGRKPLASFMFP
Ga0318538_103632372	3300031546	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTITFGWPGRKPLATVVLP
Ga0302321_1020917492	3300031726	Fen	MTNTASLRTIALAAVVVVVTDVTWDGTSLHISFGWPGRRPIASFVFP
Ga0318526_102109621	3300031769	Soil	MPRLRTFVIAAAVVVLSDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0318550_102415033	3300031797	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVV
Ga0318564_103270071	3300031831	Soil	AAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0306923_104230503	3300031910	Soil	MPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0308174_108575722	3300031939	Soil	MPRLRTIAIAAVVIVVTDVTWDGTSLRVSVGWPGRRPLASFFLP
Ga0306922_104428602	3300032001	Soil	MPRLRTFVVAAAVVVLTDVTWDGTSLTITFGWPGRKPLATVVLP
Ga0318513_105078192	3300032065	Soil	LGMPRLRTFVIAAAVVVLTDVTWDGTSLTIAFGWPGRKPLATVVLP
Ga0306920_1010042232	3300032261	Soil	MVALVAVAVVVVTDVTWDGTSLRVSFGWPGRKPFASFVFP
Ga0306920_1019275492	3300032261	Soil	MPTHPRLRTLLIVLAVIVFTDVTWDGTSLRLSFGWPRRRPIVSFDFP