Metagenome / Metatranscriptome Family F091919

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091919
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	56 residues
Representative Sequence	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEEIKKSITPNN
Number of Associated Samples	86
Number of Associated Scaffolds	104

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	16.82 %
% of genes from short scaffolds (< 2000 bps)	61.68 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (37.383 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake (20.561 % of family members)
Environment Ontology (ENVO)	Unclassified (57.944 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.94% β-sheet: 16.47% Coil/Unstructured: 50.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 104 Family Scaffolds
PF00303	Thymidylat_synt	33.65
PF13748	ABC_membrane_3	2.88
PF00149	Metallophos	1.92
PF01326	PPDK_N	1.92
PF07460	NUMOD3	1.92
PF00182	Glyco_hydro_19	1.92
PF10504	DUF2452	1.92
PF00483	NTP_transferase	1.92
PF00464	SHMT	0.96
PF01351	RNase_HII	0.96
PF03477	ATP-cone	0.96
PF00004	AAA	0.96
PF05728	UPF0227	0.96
PF13583	Reprolysin_4	0.96
PF13640	2OG-FeII_Oxy_3	0.96
PF00462	Glutaredoxin	0.96
PF12850	Metallophos_2	0.96
PF01464	SLT	0.96
PF04023	FeoA	0.96
PF01471	PG_binding_1	0.96
PF02195	ParBc	0.96
PF07453	NUMOD1	0.96
PF01832	Glucosaminidase	0.96
PF00156	Pribosyltran	0.96
PF12705	PDDEXK_1	0.96
PF06508	QueC	0.96
PF00293	NUDIX	0.96
PF07507	WavE	0.96
PF02511	Thy1	0.96

COG ID	Name	Functional Category	% Frequency in 104 Family Scaffolds
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	33.65
COG3979	Chitodextrinase	Carbohydrate transport and metabolism [G]	1.92
COG3179	Chitinase, GH19 family	Carbohydrate transport and metabolism [G]	1.92
COG0574	Phosphoenolpyruvate synthase/pyruvate phosphate dikinase	Carbohydrate transport and metabolism [G]	1.92
COG0519	GMP synthase, PP-ATPase domain/subunit	Nucleotide transport and metabolism [F]	0.96
COG1918	Fe2+ transport protein FeoA	Inorganic ion transport and metabolism [P]	0.96
COG1606	ATP-utilizing enzyme, PP-loop superfamily	General function prediction only [R]	0.96
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.96
COG1039	Ribonuclease HIII	Replication, recombination and repair [L]	0.96
COG0780	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, C-terminal domain, T-fold superfamily	Translation, ribosomal structure and biogenesis [J]	0.96
COG0603	7-cyano-7-deazaguanine synthase (queuosine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.96
COG0037	tRNA(Ile)-lysidine synthase TilS/MesJ	Translation, ribosomal structure and biogenesis [J]	0.96
COG0482	tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain	Translation, ribosomal structure and biogenesis [J]	0.96
COG0301	Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis)	Translation, ribosomal structure and biogenesis [J]	0.96
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.96
COG0164	Ribonuclease HII	Replication, recombination and repair [L]	0.96
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.96
COG0137	Argininosuccinate synthase	Amino acid transport and metabolism [E]	0.96
COG0112	Glycine/serine hydroxymethyltransferase	Amino acid transport and metabolism [E]	0.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.62 %
Unclassified	root	N/A	37.38 %

Name	Rank	Taxonomy	Distribution
Viruses	superkingdom	All Organisms → Viruses	45.79 %
Unclassified	root	N/A	37.38 %
cellular organisms	root	All Organisms → cellular organisms	16.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	34.58 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.82 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
unclassified bacterial viruses	clade	All Organisms → Viruses → unclassified bacterial viruses	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.67 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	3.74 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
environmental samples	no rank	All Organisms → Viruses → unclassified bacterial viruses → environmental samples	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	3.74 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.80 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	34.58 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.80 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.80 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.80 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2.80 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Winogradskyella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella	0.93 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
unclassified Winogradskyella	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella	0.93 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.38 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27.10 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.28 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	3.74 %
Winogradskyella sp.	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	0.93 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
uncultured marine phage	species	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001282\|B570J14230_10174084	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	604	Open in IMG/M
3300001968\|GOS2236_1088703	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	2583	Open in IMG/M
3300005581\|Ga0049081_10180764	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005581\|Ga0049081_10258050	Not Available	610	Open in IMG/M
3300005662\|Ga0078894_11328372	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006641\|Ga0075471_10100937	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1549	Open in IMG/M
3300006802\|Ga0070749_10059333	All Organisms → Viruses → Predicted Viral	2312	Open in IMG/M
3300006917\|Ga0075472_10336619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	745	Open in IMG/M
3300007169\|Ga0102976_1005298	Not Available	16599	Open in IMG/M
3300007538\|Ga0099851_1153940	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	855	Open in IMG/M
3300007538\|Ga0099851_1169235	Not Available	807	Open in IMG/M
3300007992\|Ga0105748_10489756	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	536	Open in IMG/M
3300008055\|Ga0108970_10584625	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7432	Open in IMG/M
3300008113\|Ga0114346_1019705	All Organisms → Viruses → Predicted Viral	4492	Open in IMG/M
3300008120\|Ga0114355_1048231	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1959	Open in IMG/M
3300008266\|Ga0114363_1010739	All Organisms → cellular organisms → Bacteria	4348	Open in IMG/M
3300008267\|Ga0114364_1012138	All Organisms → Viruses → Predicted Viral	3881	Open in IMG/M
3300008267\|Ga0114364_1022534	All Organisms → Viruses → Predicted Viral	2590	Open in IMG/M
3300008267\|Ga0114364_1031502	All Organisms → Viruses → Predicted Viral	2073	Open in IMG/M
3300008267\|Ga0114364_1095279	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	940	Open in IMG/M
3300008267\|Ga0114364_1129092	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	736	Open in IMG/M
3300008448\|Ga0114876_1009334	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5731	Open in IMG/M
3300008450\|Ga0114880_1173694	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	751	Open in IMG/M
3300008962\|Ga0104242_1072815	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	572	Open in IMG/M
3300009068\|Ga0114973_10731255	Not Available	502	Open in IMG/M
3300009085\|Ga0105103_10004303	Not Available	7083	Open in IMG/M
3300009155\|Ga0114968_10292960	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	912	Open in IMG/M
3300009159\|Ga0114978_10033661	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3643	Open in IMG/M
3300009161\|Ga0114966_10125932	All Organisms → Viruses → Predicted Viral	1693	Open in IMG/M
3300009182\|Ga0114959_10063468	Not Available	2102	Open in IMG/M
3300009184\|Ga0114976_10600263	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	559	Open in IMG/M
3300010160\|Ga0114967_10018920	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	4888	Open in IMG/M
3300010354\|Ga0129333_10254141	Not Available	1583	Open in IMG/M
3300010354\|Ga0129333_10716481	Not Available	859	Open in IMG/M
3300010370\|Ga0129336_10117089	Not Available	1555	Open in IMG/M
3300010885\|Ga0133913_12893931	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1151	Open in IMG/M
3300013004\|Ga0164293_10134802	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1853	Open in IMG/M
3300013004\|Ga0164293_10244400	All Organisms → Viruses → Predicted Viral	1271	Open in IMG/M
3300013004\|Ga0164293_10608973	Not Available	709	Open in IMG/M
3300013014\|Ga0164295_10756535	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	751	Open in IMG/M
3300014819\|Ga0119954_1047333	Not Available	752	Open in IMG/M
3300017777\|Ga0181357_1243437	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	627	Open in IMG/M
3300017784\|Ga0181348_1317960	Not Available	516	Open in IMG/M
3300018876\|Ga0181564_10581998	Not Available	595	Open in IMG/M
3300020048\|Ga0207193_1014548	Not Available	10511	Open in IMG/M
3300020074\|Ga0194113_10006697	Not Available	14604	Open in IMG/M
3300020074\|Ga0194113_10080762	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300020074\|Ga0194113_10080762	All Organisms → cellular organisms → Bacteria	2940	Open in IMG/M
3300020074\|Ga0194113_10595734	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300020083\|Ga0194111_10811135	Not Available	563	Open in IMG/M
3300020109\|Ga0194112_10515589	Not Available	834	Open in IMG/M
3300020151\|Ga0211736_10726244	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2834	Open in IMG/M
3300020159\|Ga0211734_11254815	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	625	Open in IMG/M
3300020161\|Ga0211726_10722064	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	814	Open in IMG/M
3300020179\|Ga0194134_10102228	All Organisms → cellular organisms → Bacteria → FCB group	1400	Open in IMG/M
3300020179\|Ga0194134_10102228	All Organisms → cellular organisms → Bacteria → FCB group	1400	Open in IMG/M
3300020183\|Ga0194115_10015546	Not Available	6392	Open in IMG/M
3300020183\|Ga0194115_10059221	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2350	Open in IMG/M
3300020190\|Ga0194118_10418435	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	671	Open in IMG/M
3300020193\|Ga0194131_10040249	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3461	Open in IMG/M
3300020197\|Ga0194128_10527753	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	537	Open in IMG/M
3300020221\|Ga0194127_10441876	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	852	Open in IMG/M
3300020578\|Ga0194129_10147311	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1516	Open in IMG/M
3300021091\|Ga0194133_10010379	Not Available	10495	Open in IMG/M
3300021093\|Ga0194123_10015025	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6544	Open in IMG/M
3300021376\|Ga0194130_10008920	Not Available	10494	Open in IMG/M
3300021376\|Ga0194130_10008920	Not Available	10494	Open in IMG/M
3300022063\|Ga0212029_1045043	Not Available	636	Open in IMG/M
3300022176\|Ga0212031_1008869	Not Available	1381	Open in IMG/M
3300022200\|Ga0196901_1249364	Not Available	551	Open in IMG/M
3300022407\|Ga0181351_1219594	Not Available	618	Open in IMG/M
3300023174\|Ga0214921_10000566	All Organisms → cellular organisms → Bacteria	68258	Open in IMG/M
3300023179\|Ga0214923_10385988	Not Available	724	Open in IMG/M
(restricted) 3300023208\|Ga0233424_10040640	Not Available	2204	Open in IMG/M
3300024490\|Ga0255185_1055592	Not Available	542	Open in IMG/M
3300025646\|Ga0208161_1053178	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Winogradskyella → unclassified Winogradskyella → Winogradskyella sp.	1283	Open in IMG/M
3300025647\|Ga0208160_1014154	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	2636	Open in IMG/M
3300025687\|Ga0208019_1162489	Not Available	619	Open in IMG/M
3300025732\|Ga0208784_1062278	Not Available	1138	Open in IMG/M
3300027079\|Ga0255188_1072425	Not Available	614	Open in IMG/M
3300027659\|Ga0208975_1117271	Not Available	762	Open in IMG/M
(restricted) 3300027728\|Ga0247836_1000986	Not Available	49114	Open in IMG/M
(restricted) 3300027728\|Ga0247836_1002701	Not Available	25186	Open in IMG/M
(restricted) 3300027730\|Ga0247833_1002564	Not Available	26318	Open in IMG/M
3300027782\|Ga0209500_10287358	Not Available	702	Open in IMG/M
3300027899\|Ga0209668_10229596	All Organisms → cellular organisms → Bacteria → Proteobacteria	1167	Open in IMG/M
3300027900\|Ga0209253_10170622	All Organisms → Viruses → Predicted Viral	1752	Open in IMG/M
3300027969\|Ga0209191_1362620	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	520	Open in IMG/M
3300027972\|Ga0209079_10010938	All Organisms → Viruses → Predicted Viral	3025	Open in IMG/M
3300028394\|Ga0304730_1067774	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1658	Open in IMG/M
(restricted) 3300028569\|Ga0247843_1000268	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	124769	Open in IMG/M
(restricted) 3300028569\|Ga0247843_1080458	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1580	Open in IMG/M
(restricted) 3300028569\|Ga0247843_1143412	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	992	Open in IMG/M
3300031746\|Ga0315293_10501100	Not Available	938	Open in IMG/M
3300031758\|Ga0315907_11203783	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	530	Open in IMG/M
3300031784\|Ga0315899_10001441	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	27040	Open in IMG/M
3300031857\|Ga0315909_10135440	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2055	Open in IMG/M
3300031857\|Ga0315909_10164920	Not Available	1803	Open in IMG/M
3300031857\|Ga0315909_10607970	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	729	Open in IMG/M
3300031951\|Ga0315904_10060184	All Organisms → Viruses → Predicted Viral	4179	Open in IMG/M
3300031963\|Ga0315901_10152526	All Organisms → Viruses → Predicted Viral	2058	Open in IMG/M
3300031963\|Ga0315901_11020715	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	576	Open in IMG/M
3300032050\|Ga0315906_10812749	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	731	Open in IMG/M
3300033994\|Ga0334996_0005623	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	8518	Open in IMG/M
3300033996\|Ga0334979_0213857	All Organisms → Viruses → unclassified bacterial viruses → environmental samples → uncultured marine phage	1131	Open in IMG/M
3300034023\|Ga0335021_0001473	Not Available	18382	Open in IMG/M
3300034061\|Ga0334987_0000016	Not Available	140278	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	82.24%
Marine	Environmental → Aquatic → Marine	16.82%
Leaf	Host-Associated → Plants → Leaf	0.93%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	60.75%
Coastal	Environmental → Aquatic → Marine → Coastal	14.95%
Lentic	Environmental → Aquatic → Freshwater → Lentic	9.35%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	8.41%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
River	Environmental → Aquatic → Freshwater → River	1.87%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.87%
Unclassified	Host-Associated → Plants → Leaf → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	58.88%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	14.95%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.87%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.87%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	1.87%
Epilimnion	Environmental → Aquatic → Freshwater → Lentic → Epilimnion	0.93%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Unclassified	Host-Associated → Plants → Leaf → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	20.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	15.89%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.21%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	10.28%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	8.41%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	7.48%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.67%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	3.74%
Freshwater Lentic	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic	2.80%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.87%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.87%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater	0.93%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment	0.93%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	0.93%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.93%
Estuary	Host-Associated → Plants → Leaf → Unclassified → Unclassified → Estuary	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001282	Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnion	Environmental	Open in IMG/M
3300001968	Marine microbial communities from Lake Gatun, Panama - GS020	Environmental	Open in IMG/M
3300005581	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF	Environmental	Open in IMG/M
3300005662	Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)	Environmental	Open in IMG/M
3300006641	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_D_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300007169	Combined Assembly of cyanobacterial bloom in Marina Bay water reservoir, Singapore (Diel cycle-Bottom layer) 8 sequencing projects	Environmental	Open in IMG/M
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental	Open in IMG/M
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental	Open in IMG/M
3300008055	Metatranscriptomes of the Eelgrass leaves and roots. Combined Assembly of Gp0128390, Gp0128391, Gp0128392, and Gp0128393	Host-Associated	Open in IMG/M
3300008113	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NA	Environmental	Open in IMG/M
3300008120	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0108-3-NA	Environmental	Open in IMG/M
3300008266	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NA	Environmental	Open in IMG/M
3300008267	Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTR	Environmental	Open in IMG/M
3300008448	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - August 4, 2014 all contigs	Environmental	Open in IMG/M
3300008450	Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigs	Environmental	Open in IMG/M
3300008962	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5	Environmental	Open in IMG/M
3300009068	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaG	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009155	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG	Environmental	Open in IMG/M
3300009159	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG	Environmental	Open in IMG/M
3300009161	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG	Environmental	Open in IMG/M
3300009182	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG	Environmental	Open in IMG/M
3300009184	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaG	Environmental	Open in IMG/M
3300010160	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG	Environmental	Open in IMG/M
3300010354	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNA	Environmental	Open in IMG/M
3300010370	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.2_DNA	Environmental	Open in IMG/M
3300010885	northern Canada Lakes Co-assembly	Environmental	Open in IMG/M
3300013004	Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaG	Environmental	Open in IMG/M
3300013014	Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaG	Environmental	Open in IMG/M
3300014819	Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1011A	Environmental	Open in IMG/M
3300017777	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM110.D.N	Environmental	Open in IMG/M
3300017784	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N	Environmental	Open in IMG/M
3300018876	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011513CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020048	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915	Environmental	Open in IMG/M
3300020074	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m	Environmental	Open in IMG/M
3300020083	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015033 Kigoma Deep Cast 300m	Environmental	Open in IMG/M
3300020109	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400m	Environmental	Open in IMG/M
3300020151	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1	Environmental	Open in IMG/M
3300020159	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1	Environmental	Open in IMG/M
3300020161	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1	Environmental	Open in IMG/M
3300020179	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0m	Environmental	Open in IMG/M
3300020183	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surface	Environmental	Open in IMG/M
3300020190	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015013 Mahale N5 surface	Environmental	Open in IMG/M
3300020193	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015053 Kigoma Offshore 120m	Environmental	Open in IMG/M
3300020197	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015037 Kigoma Deep Cast 65m	Environmental	Open in IMG/M
3300020221	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015036 Kigoma Deep Cast 100m	Environmental	Open in IMG/M
3300020578	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015038 Kigoma Deep Cast 35m	Environmental	Open in IMG/M
3300021091	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40m	Environmental	Open in IMG/M
3300021093	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surface	Environmental	Open in IMG/M
3300021376	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface	Environmental	Open in IMG/M
3300022063	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v2)	Environmental	Open in IMG/M
3300022176	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)	Environmental	Open in IMG/M
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental	Open in IMG/M
3300022407	Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.D	Environmental	Open in IMG/M
3300023174	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505	Environmental	Open in IMG/M
3300023179	Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1510	Environmental	Open in IMG/M
3300023208 (restricted)	Freshwater microbial communities from Lake Towuti, South Sulawesi, Indonesia - Watercolumn_Towuti2014_125_MG	Environmental	Open in IMG/M
3300024490	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h	Environmental	Open in IMG/M
3300025646	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025647	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025687	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)	Environmental	Open in IMG/M
3300025732	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300027079	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_8h	Environmental	Open in IMG/M
3300027659	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)	Environmental	Open in IMG/M
3300027728 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14m	Environmental	Open in IMG/M
3300027730 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8m	Environmental	Open in IMG/M
3300027782	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027899	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027969	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)	Environmental	Open in IMG/M
3300027972	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300028394	Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130628_MF_MetaG (v2)	Environmental	Open in IMG/M
3300028569 (restricted)	Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2017_8m	Environmental	Open in IMG/M
3300031746	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_20	Environmental	Open in IMG/M
3300031758	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123	Environmental	Open in IMG/M
3300031784	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112	Environmental	Open in IMG/M
3300031857	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125	Environmental	Open in IMG/M
3300031951	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120	Environmental	Open in IMG/M
3300031963	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116	Environmental	Open in IMG/M
3300032050	Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122	Environmental	Open in IMG/M
3300033994	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046	Environmental	Open in IMG/M
3300033996	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Jul2016-rr0004	Environmental	Open in IMG/M
3300034023	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Oct2016-rr0090	Environmental	Open in IMG/M
3300034061	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
B570J14230_101740843	3300001282	Freshwater	MENLQIKIVITDGEKEAKTSINIEDYQMTKELHGVSLIDEQVDVLLNEIKKSISPNN*
GOS2236_10887035	3300001968	Marine	MENLQIKIAITDGEKEVKTSINVEDYQKIKELHGISLIDEQVDVLLDEIKK*
Ga0049081_101807642	3300005581	Freshwater Lentic	MKNLQIEITITDGEKEAKASINVGEYQMMKELYNVSLIDMQVDVLLNEIKKSITPIN*
Ga0049081_102580501	3300005581	Freshwater Lentic	MENLKIKIIITDGEKEAKTTVNVNDYLTMKELHGVSLLDLQVDTLLEEIVI*
Ga0078894_113283722	3300005662	Freshwater Lake	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSISPNN*
Ga0075471_101009372	3300006641	Aqueous	MENLQIKITITDGEKEAKTTIGVNDYINMKNLHGVSLLDLQVDTLLDEINKPITPSN*
Ga0070749_100593335	3300006802	Aqueous	MKNLQIKITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSTIPNN*
Ga0075472_103366191	3300006917	Aqueous	ITITDGEKEAKTTIGVNDYINMKNLHGVSLLDLQVDTLLDEINKPITPSN*
Ga0102976_100529833	3300007169	Freshwater Lake	MENLQIKITITDGEKEAKTTIDVNDYINMKNLHGVSLLDLQVDTLLEEINKPITPNN*
Ga0099851_11539402	3300007538	Aqueous	MENLQIKITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPNN*
Ga0099851_11692352	3300007538	Aqueous	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPNN*
Ga0105748_104897561	3300007992	Estuary Water	EAKTTVNVNDYLNMKNLHGVSLLDLQVDSLLEEIKKSITPNH*
Ga0108970_105846252	3300008055	Estuary	MENLQIKITITDGEKEAKTTVNVNDYLNMKNLHGVSLLDLQVDSLLEEIKKSITPNH*
Ga0114346_10197052	3300008113	Freshwater, Plankton	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKK*
Ga0114355_10482311	3300008120	Freshwater, Plankton	LQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEKIKKSITPNN*
Ga0114363_10107392	3300008266	Freshwater, Plankton	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEKIKKSITPNN*
Ga0114364_101213812	3300008267	Freshwater, Plankton	NLQIKITITDGEKEAKATIGLNEYQSIKEMHGISMLDEQVDILLEEINKPITPIN*
Ga0114364_10225344	3300008267	Freshwater, Plankton	MENLQIKITITDGEKEAKTIVNANDYLNMKNLHGVSLLDLQVDTLLEEINKPITPSN*
Ga0114364_10315023	3300008267	Freshwater, Plankton	MVNLQIKITITDGEKEAKSSINVEDYQIMKQLHGVNLVGETVDALLDKIQKSITSKD*
Ga0114364_10952793	3300008267	Freshwater, Plankton	MENLQIKIVITDGEKEAKTSIDIKDYQMMKELHGVSLIDEQVDVLLNEIKKSISPNN*
Ga0114364_11290922	3300008267	Freshwater, Plankton	MENLQIKITITDGKNEAKTTVNVGDYLGMRNLHGVSLLDLQVDTLLEEINKSITSVN*
Ga0114876_100933412	3300008448	Freshwater Lake	MKNLQIKITITDGEKEAKATIGLNEYQSIKEMHGISMLDEQVDILLEEINKPITPIN*
Ga0114880_11736941	3300008450	Freshwater Lake	MENLQIKIVITDGEKEAKTSINIKDYQVMKELHGVSLIDMQVDALLNETFGGNNEN*
Ga0104242_10728151	3300008962	Freshwater	MIKLKINNMENLQIKITITDGEKEVKTTINVDDYKTIKELHGVSMLDDLVDVLLQDINKK
Ga0114973_107312551	3300009068	Freshwater Lake	KVMNKNLQIKITITDGEKEVKTTINVDDYKTIKKLHGVSMLDDLVDVLLQDINKQ*
Ga0105103_100043032	3300009085	Freshwater Sediment	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPIN*
Ga0114968_102929602	3300009155	Freshwater Lake	MNKNLQIKITITDGEKEVKTTINVDDYKTIKKLHGVSMLDDLVDVLLQDINKQ*
Ga0114978_1003366111	3300009159	Freshwater Lake	MNKNLQIKITITDGEKEVKTTINVDDYKTIKELHGVSMLDDLVDVLLQDINKK*
Ga0114966_101259325	3300009161	Freshwater Lake	MENLQIKIVITDGEKEAKTSINVKDYQMMKELHGVSLIDMQVDVVLDEIKKSISPNN*
Ga0114959_100634686	3300009182	Freshwater Lake	MENLQIKITITDGEKEVKTTINVDDYKTIKKLHGVSMLDDLVDVLLQDIRKK*
Ga0114976_106002631	3300009184	Freshwater Lake	MENLKIKISITDGEQEAKTVVNVNDYVNMKEFHGVSLLDLQVDTLLEEIKKT
Ga0114967_1001892012	3300010160	Freshwater Lake	MENLQIKITITDGEKEAKSVINVNEYKSIKEMHGISLVDETIDSLLEEINKTLNK*
Ga0129333_102541411	3300010354	Freshwater To Marine Saline Gradient	LQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEEIKKSITPNN*
Ga0129333_107164812	3300010354	Freshwater To Marine Saline Gradient	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDELVDVLLEEIKKSITPNN*
Ga0129336_101170892	3300010370	Freshwater To Marine Saline Gradient	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEEIKKSITPNN*
Ga0133913_128939314	3300010885	Freshwater Lake	MENLQIKIVITDGEKEAKTSINVKDYQMMKELHGVSLIDMQVDVLLDEIKKSISPNN*
Ga0164293_101348022	3300013004	Freshwater	MENLEIRIVITDGEKEAKTSVNVADYQKIKESHGVNVVDMQIDMLLDEIKTNNSSN*
Ga0164293_102444002	3300013004	Freshwater	MENLQIKITITDGEKKAKTTIGVNDYLNMKNLHGVSLLDLQVDTLLEEINKPVTPSN*
Ga0164293_106089732	3300013004	Freshwater	MENLQIKITITDGEKDAKASINVEEYQKMKELHGVSLVDEIVNTLLNKIKDSITTNN*
Ga0164295_107565351	3300013014	Freshwater	LNEKNMENLQIKITITDGEKEVKTTINVDDYKTIKKLHGVSMLDDLVDVLLQDIRKK*
Ga0119954_10473332	3300014819	Freshwater	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNE
Ga0181357_12434373	3300017777	Freshwater Lake	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKTSK
Ga0181348_13179602	3300017784	Freshwater Lake	VGEKQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSISPNN
Ga0181564_105819981	3300018876	Salt Marsh	MKNLQIKITITDGEKEAKASINVGEYQMMKELHNVNLIDMQVDVLLNEIKKSTIPNN
Ga0207193_10145482	3300020048	Freshwater Lake Sediment	MENLKIKISITDGEQEAKTVVNVNDYVNMKEFHGVSLLDLQVDALLEEIKKIITPNN
Ga0194113_100066971	3300020074	Freshwater Lake	MENLQIKITITDGKKEAKATISVNEYQSIKEMHGISMLDEQVGILLEEIEKSTTPNN
Ga0194113_100807623	3300020074	Freshwater Lake	MENLQIKITITNGEKEANATISVNEYQSIKEIHGISMLDEQVGILLEEIEKSITPNH
Ga0194113_100807625	3300020074	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEEIKKSITPNN
Ga0194113_105957342	3300020074	Freshwater Lake	MENLQIKITITDGEKEANAKIGLNEYQSIKEMHGISMLDEQVDILLEEIKKSITSNN
Ga0194111_108111352	3300020083	Freshwater Lake	MENLQIKITITDGEKEAKATISVNEYQSIKEMHGISMLDEQVGILLEEIEKSITPNS
Ga0194112_105155892	3300020109	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEQIKKSITPNH
Ga0211736_107262446	3300020151	Freshwater	MENLQIKITITDGEKEAKTTIDVNDYLNMKDLHGVSLLDLLVDTLLDEINKPITPSN
Ga0211734_112548152	3300020159	Freshwater	MENLQIKITITDGEKEAKTTVNVNDYLNMKDLHGVSLLDLQVDTLLDEINKSITPSNQSTFIQLNL
Ga0211726_107220642	3300020161	Freshwater	MENLQIKITITDGEKEAKSTIGLNEYQSIKEMHGISMLDEQVDILLEEINKPITPIN
Ga0194134_101022281	3300020179	Freshwater Lake	MENLQIKITITDGEKEAKATISVNEYQSIKEMHGISMLDEQVAILLEEIEKSITRNY
Ga0194134_101022283	3300020179	Freshwater Lake	MENLQIKITITDGKKEANATIGLNEYQPIKEMHGISMLDEQVSILLEEIKKSITPNH
Ga0194115_1001554616	3300020183	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEEIEKSITRNY
Ga0194115_100592215	3300020183	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEIHGISMLDEQVDILLEQIKKSITPNN
Ga0194118_104184351	3300020190	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEQIKKSITPNN
Ga0194131_1004024910	3300020193	Freshwater Lake	MENLQIKVTITDGEKEAKSTIDLNEYQSIKEMHGISMLDEQVDILLEEIKKKW
Ga0194128_105277531	3300020197	Freshwater Lake	MENLQIKITITDGKKEAKATISVNEYQSIKEIHGISMLDEQVDILLEEIEKSITSNN
Ga0194127_104418762	3300020221	Freshwater Lake	MENLQIKVTITDGEKEAKSTIDLNEYQSIKEMHGISMLDEQVDILLEEIKKKY
Ga0194129_101473114	3300020578	Freshwater Lake	MENLQIKITITDGEKEAKATISVNEYQSIKEMHGISILDEQVGILLEEIEKSITPNS
Ga0194133_1001037921	3300021091	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEQIKKSITLNN
Ga0194123_100150252	3300021093	Freshwater Lake	MENLQIKITITDGEKEANATIGLNEYQSIKEMHGISMLDEQVDILLEEIEKSITSIN
Ga0194130_100089205	3300021376	Freshwater Lake	MENLQIKITITDGEKEAKATISVNEYQSIKEMHGISMLDEQVGILLEEIEKSITRNY
Ga0194130_100089207	3300021376	Freshwater Lake	MENLQIKITITDGKKEANATIGLNEYQSIKEMHGISMLDEQVSILLEEIKKSITPNH
Ga0212029_10450431	3300022063	Aqueous	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSTTPIN
Ga0212031_10088693	3300022176	Aqueous	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPNN
Ga0196901_12493641	3300022200	Aqueous	MKNLQIEITITDGEKEAKTSINVGEYQMMKELHNVSLIDMQVDVLL
Ga0181351_12195942	3300022407	Freshwater Lake	MNKLKINEIMENLQIKITVTNGEKEAKTSVNVEDYQKMKELHGVSMLDLQVDALLDEIGKSISPNN
Ga0214921_10000566118	3300023174	Freshwater	MENLQIKITITDGEKEVKTTINVDDYKTIKELHGVSMLDDLVDVLLQDINKK
Ga0214923_103859882	3300023179	Freshwater	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDFLLEEIKKSITPNN
(restricted) Ga0233424_100406402	3300023208	Freshwater	MKNLQIKITITNGEKEAKTTINVNDYKTMKELHGVNLVDEQIDVLLDEIKKSITPSN
Ga0255185_10555922	3300024490	Freshwater	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDELVDVLLEEIKKSITPNN
Ga0208161_10531784	3300025646	Aqueous	MKNLQIKITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSTIPNN
Ga0208160_10141541	3300025647	Aqueous	QINTQINTMKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPNN
Ga0208019_11624892	3300025687	Aqueous	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPSN
Ga0208784_10622783	3300025732	Aqueous	MENLQIKITITDGEKEAKTTIGVNDYINMKNLHGVSLLDLQVDTLLDEINKPITPSN
Ga0255188_10724251	3300027079	Freshwater	ITDGEKEAKAIISVNEYQSIKEIHGISMLDELVDVLLEEIKKSITPNN
Ga0208975_11172712	3300027659	Freshwater Lentic	MKNLQIEITITDGEKEAKASINVGEYQMMKELYNVSLIDMQVDVLLNEIKKSITPIN
(restricted) Ga0247836_100098642	3300027728	Freshwater	MENLQIKITITDGEKEAKTTIRVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITPTN
(restricted) Ga0247836_10027011	3300027728	Freshwater	EKEAKTTIRVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITPNN
(restricted) Ga0247833_10025642	3300027730	Freshwater	MENLQIKITITDGEKEAKTTIRVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITPNN
Ga0209500_102873581	3300027782	Freshwater Lake	MNKNLQIKITITDGEKEVKTTINVDDYKTIKELHGVSMLDDLVDVLLQDINKK
Ga0209668_102295963	3300027899	Freshwater Lake Sediment	MKNLQIKIVITDGEKEAKTSINIEDYQMTKELHGVSLIDEQVDVLLNEIKKSISPNN
Ga0209253_101706226	3300027900	Freshwater Lake Sediment	MKNLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSISPNN
Ga0209191_13626202	3300027969	Freshwater Lake	MENLKIKISITDGEQEAKTVVNVNDYVNMKEFHGVSLLDLKVDALLEEIKKIITPNN
Ga0209079_100109381	3300027972	Freshwater Sediment	MKNLQIEITITDGEKEAKASINVGEYQMMKELHNVSLIDMQVDVLLNEIKKSITPIN
Ga0304730_10677745	3300028394	Freshwater Lake	MENLQIKITITDGEKEAKSVINVNEYKSIKEMHGISLVDETIDSLLEEINKTLNK
(restricted) Ga0247843_10002681	3300028569	Freshwater	EKEAKTTIRVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITPTN
(restricted) Ga0247843_10804581	3300028569	Freshwater	MENLQIKITITDGEKEAKTTIHVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITPNN
(restricted) Ga0247843_11434123	3300028569	Freshwater	MENLQIKITITDGEKEAKTTIRVNDYLNMKNLHGVSLLDLQVDTLLEDINKPITP
Ga0315293_105011002	3300031746	Sediment	MENLQIKITITDGEKEAKTTIGVNDYLNMKNLHGVSLLDLQVDTLLEEINKPITPSN
Ga0315907_112037832	3300031758	Freshwater	MENLQIKITITDGEKEAKTIVNANDYLNMKNLHEVSLLDLQVDTLLEEINKPVTPSN
Ga0315899_100014412	3300031784	Freshwater	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKK
Ga0315909_101354405	3300031857	Freshwater	MENLQIKIVITDGEKEAKTSINIKDYQVMKELHGVSLIDMQVDALLNETFGGNNEN
Ga0315909_101649204	3300031857	Freshwater	MENLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDVLLEEIKKSITPNN
Ga0315909_106079702	3300031857	Freshwater	MKNLQIKITITDGEKEAKATIGLNEYQSIKEMHGISMLDEQVDILLEEINKPITPIN
Ga0315904_1006018415	3300031951	Freshwater	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSISPN
Ga0315901_101525266	3300031963	Freshwater	MENLQIKITITDGEKESKTTVNVNDYLNIKNLHGVSLLDLQVDSLLEEIKKYKL
Ga0315901_110207152	3300031963	Freshwater	MENLQIKIVITDGEKEAKTSIDIKDYQMMKELHGVSLIDEQVDVLLNEIKKSISPNN
Ga0315906_108127492	3300032050	Freshwater	MENLQIKITITDGEKEAKTIVNANDYLNMKNLHEVSLLDLQVDTLLEEINKPVTPNH
Ga0334996_0005623_1147_1320	3300033994	Freshwater	MENLQIKITITDGEKDAKASINVEEYQKMKELHGVSLVDEIVNTLLNKIKDSITTNN
Ga0334979_0213857_244_417	3300033996	Freshwater	MENLQIKITITDGEKKAKTTIGVNDYLNMKNLHGVSLLDLQVDTLLEEINKPVTPSN
Ga0335021_0001473_8742_8915	3300034023	Freshwater	MKNLQIKITITDGEKEAKAIISVNEYQSIKEIHGISMLDEQVDFLLEEIKKSITPNN
Ga0334987_0000016_23214_23378	3300034061	Freshwater	MENLQIKIVITDGEKEAKTSINIEDYQMMKELHGVSLIDEQVDVLLNEIKKSSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters