Basic Information | |
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Family ID | F091862 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 45 residues |
Representative Sequence | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG |
Number of Associated Samples | 75 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 12.15 % |
% of genes near scaffold ends (potentially truncated) | 75.70 % |
% of genes from short scaffolds (< 2000 bps) | 98.13 % |
Associated GOLD sequencing projects | 66 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (49.533 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (36.449 % of family members) |
Environment Ontology (ENVO) | Unclassified (93.458 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (85.981 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 35.71% β-sheet: 26.19% Coil/Unstructured: 38.10% | Feature Viewer |
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Pfam ID | Name | % Frequency in 107 Family Scaffolds |
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PF04098 | Rad52_Rad22 | 25.23 |
PF02867 | Ribonuc_red_lgC | 4.67 |
COG ID | Name | Functional Category | % Frequency in 107 Family Scaffolds |
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COG0209 | Ribonucleotide reductase alpha subunit | Nucleotide transport and metabolism [F] | 4.67 |
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Name | Rank | Taxonomy | Distribution |
All Organisms | root | All Organisms | 62.62 % |
Unclassified | root | N/A | 37.38 % |
Visualization |
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Scaffold | Taxonomy | Length | IMG/M Link |
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3300001683|GBIDBA_10030383 | All Organisms → Viruses → Predicted Viral | 2304 | Open in IMG/M |
3300002519|JGI25130J35507_1082915 | All Organisms → cellular organisms → Bacteria | 594 | Open in IMG/M |
3300006736|Ga0098033_1227739 | Not Available | 511 | Open in IMG/M |
3300006738|Ga0098035_1175396 | All Organisms → cellular organisms → Bacteria | 722 | Open in IMG/M |
3300006750|Ga0098058_1097789 | All Organisms → cellular organisms → Bacteria | 795 | Open in IMG/M |
3300006750|Ga0098058_1134644 | Not Available | 657 | Open in IMG/M |
3300006750|Ga0098058_1144635 | Not Available | 630 | Open in IMG/M |
3300006751|Ga0098040_1088372 | Not Available | 939 | Open in IMG/M |
3300006754|Ga0098044_1293560 | Not Available | 623 | Open in IMG/M |
3300006768|Ga0098071_119555 | Not Available | 578 | Open in IMG/M |
3300006926|Ga0098057_1084864 | All Organisms → cellular organisms → Bacteria | 772 | Open in IMG/M |
3300006927|Ga0098034_1026870 | All Organisms → Viruses → Predicted Viral | 1749 | Open in IMG/M |
3300006927|Ga0098034_1108956 | Not Available | 791 | Open in IMG/M |
3300006927|Ga0098034_1226070 | Not Available | 519 | Open in IMG/M |
3300006927|Ga0098034_1227933 | Not Available | 517 | Open in IMG/M |
3300006947|Ga0075444_10201159 | All Organisms → cellular organisms → Bacteria | 805 | Open in IMG/M |
3300007346|Ga0070753_1280012 | Not Available | 599 | Open in IMG/M |
3300007539|Ga0099849_1233752 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 681 | Open in IMG/M |
3300007756|Ga0105664_1018610 | All Organisms → cellular organisms → Bacteria | 616 | Open in IMG/M |
3300007758|Ga0105668_1091979 | All Organisms → Viruses → Predicted Viral | 1332 | Open in IMG/M |
3300007963|Ga0110931_1023932 | All Organisms → Viruses → Predicted Viral | 1843 | Open in IMG/M |
3300007963|Ga0110931_1064417 | All Organisms → Viruses → Predicted Viral | 1106 | Open in IMG/M |
3300008012|Ga0075480_10556777 | Not Available | 547 | Open in IMG/M |
3300008050|Ga0098052_1296782 | Not Available | 611 | Open in IMG/M |
3300008050|Ga0098052_1368292 | Not Available | 537 | Open in IMG/M |
3300008216|Ga0114898_1155949 | All Organisms → cellular organisms → Bacteria | 656 | Open in IMG/M |
3300008216|Ga0114898_1186396 | All Organisms → cellular organisms → Bacteria | 582 | Open in IMG/M |
3300008217|Ga0114899_1190692 | All Organisms → cellular organisms → Bacteria | 653 | Open in IMG/M |
3300008217|Ga0114899_1190808 | All Organisms → cellular organisms → Bacteria | 653 | Open in IMG/M |
3300008218|Ga0114904_1150201 | Not Available | 547 | Open in IMG/M |
3300008219|Ga0114905_1099965 | All Organisms → Viruses → Predicted Viral | 1007 | Open in IMG/M |
3300008219|Ga0114905_1239330 | All Organisms → cellular organisms → Bacteria | 574 | Open in IMG/M |
3300008220|Ga0114910_1151292 | All Organisms → cellular organisms → Bacteria | 660 | Open in IMG/M |
3300008627|Ga0115656_1164755 | All Organisms → cellular organisms → Bacteria | 904 | Open in IMG/M |
3300009376|Ga0118722_1364761 | All Organisms → cellular organisms → Bacteria | 733 | Open in IMG/M |
3300009412|Ga0114903_1049362 | All Organisms → cellular organisms → Bacteria | 990 | Open in IMG/M |
3300009412|Ga0114903_1108876 | All Organisms → cellular organisms → Bacteria | 611 | Open in IMG/M |
3300009412|Ga0114903_1112059 | Not Available | 601 | Open in IMG/M |
3300009413|Ga0114902_1126875 | Not Available | 663 | Open in IMG/M |
3300009414|Ga0114909_1084293 | All Organisms → cellular organisms → Bacteria | 889 | Open in IMG/M |
3300009414|Ga0114909_1135029 | All Organisms → cellular organisms → Bacteria | 658 | Open in IMG/M |
3300009418|Ga0114908_1167170 | All Organisms → cellular organisms → Bacteria | 698 | Open in IMG/M |
3300009418|Ga0114908_1185528 | Not Available | 652 | Open in IMG/M |
3300009595|Ga0105214_103568 | All Organisms → cellular organisms → Bacteria | 880 | Open in IMG/M |
3300009603|Ga0114911_1102003 | All Organisms → cellular organisms → Bacteria | 836 | Open in IMG/M |
3300009604|Ga0114901_1178072 | All Organisms → cellular organisms → Bacteria | 626 | Open in IMG/M |
3300009605|Ga0114906_1111912 | All Organisms → cellular organisms → Bacteria | 972 | Open in IMG/M |
3300009605|Ga0114906_1206296 | All Organisms → cellular organisms → Bacteria | 656 | Open in IMG/M |
3300009619|Ga0105236_1039259 | All Organisms → cellular organisms → Bacteria | 605 | Open in IMG/M |
3300009619|Ga0105236_1043837 | Not Available | 582 | Open in IMG/M |
3300009619|Ga0105236_1061924 | All Organisms → cellular organisms → Bacteria | 513 | Open in IMG/M |
3300009620|Ga0114912_1070804 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter | 862 | Open in IMG/M |
3300009620|Ga0114912_1114090 | All Organisms → cellular organisms → Bacteria | 642 | Open in IMG/M |
3300009622|Ga0105173_1015951 | All Organisms → Viruses → Predicted Viral | 1100 | Open in IMG/M |
3300009622|Ga0105173_1028118 | All Organisms → cellular organisms → Bacteria | 880 | Open in IMG/M |
3300009703|Ga0114933_10928309 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 552 | Open in IMG/M |
3300010150|Ga0098056_1202679 | All Organisms → cellular organisms → Bacteria | 662 | Open in IMG/M |
3300010150|Ga0098056_1237226 | Not Available | 606 | Open in IMG/M |
3300010151|Ga0098061_1063438 | All Organisms → cellular organisms → Bacteria | 1418 | Open in IMG/M |
3300010296|Ga0129348_1207116 | Not Available | 666 | Open in IMG/M |
3300011013|Ga0114934_10082371 | All Organisms → Viruses → Predicted Viral | 1593 | Open in IMG/M |
3300017703|Ga0181367_1034438 | Not Available | 907 | Open in IMG/M |
3300017703|Ga0181367_1043143 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 800 | Open in IMG/M |
3300017703|Ga0181367_1054630 | All Organisms → cellular organisms → Bacteria | 701 | Open in IMG/M |
3300017715|Ga0181370_1029849 | Not Available | 708 | Open in IMG/M |
3300017772|Ga0181430_1104997 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 839 | Open in IMG/M |
3300020415|Ga0211553_10426010 | All Organisms → cellular organisms → Bacteria | 534 | Open in IMG/M |
3300021977|Ga0232639_1175478 | All Organisms → cellular organisms → Bacteria | 817 | Open in IMG/M |
3300022227|Ga0187827_10395820 | All Organisms → cellular organisms → Bacteria | 859 | Open in IMG/M |
3300025029|Ga0207900_103558 | All Organisms → Viruses → Predicted Viral | 1488 | Open in IMG/M |
3300025072|Ga0208920_1077912 | Not Available | 630 | Open in IMG/M |
3300025097|Ga0208010_1004886 | All Organisms → Viruses → Predicted Viral | 3881 | Open in IMG/M |
3300025109|Ga0208553_1108666 | All Organisms → cellular organisms → Bacteria | 637 | Open in IMG/M |
3300025114|Ga0208433_1119216 | Not Available | 642 | Open in IMG/M |
3300025118|Ga0208790_1175082 | Not Available | 580 | Open in IMG/M |
3300025125|Ga0209644_1043877 | All Organisms → Viruses → Predicted Viral | 1015 | Open in IMG/M |
3300025125|Ga0209644_1120365 | Not Available | 625 | Open in IMG/M |
3300025141|Ga0209756_1140683 | Not Available | 983 | Open in IMG/M |
3300025141|Ga0209756_1236502 | All Organisms → cellular organisms → Bacteria | 677 | Open in IMG/M |
3300025218|Ga0207882_1008155 | All Organisms → Viruses → Predicted Viral | 1672 | Open in IMG/M |
3300025241|Ga0207893_1030980 | Not Available | 757 | Open in IMG/M |
3300025251|Ga0208182_1041743 | Not Available | 990 | Open in IMG/M |
3300025251|Ga0208182_1070943 | Not Available | 674 | Open in IMG/M |
3300025264|Ga0208029_1042854 | Not Available | 985 | Open in IMG/M |
3300025264|Ga0208029_1048372 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium | 901 | Open in IMG/M |
3300025277|Ga0208180_1042523 | All Organisms → Viruses → Predicted Viral | 1211 | Open in IMG/M |
3300025277|Ga0208180_1111963 | All Organisms → cellular organisms → Bacteria | 592 | Open in IMG/M |
3300025300|Ga0208181_1103010 | Not Available | 545 | Open in IMG/M |
3300025301|Ga0208450_1070223 | Not Available | 815 | Open in IMG/M |
3300025873|Ga0209757_10084488 | Not Available | 961 | Open in IMG/M |
3300025873|Ga0209757_10111082 | Not Available | 844 | Open in IMG/M |
3300025873|Ga0209757_10301496 | Not Available | 510 | Open in IMG/M |
3300027838|Ga0209089_10153685 | All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium | 1383 | Open in IMG/M |
(restricted) 3300027865|Ga0255052_10404570 | Not Available | 668 | Open in IMG/M |
3300028018|Ga0256381_1052717 | All Organisms → cellular organisms → Bacteria | 622 | Open in IMG/M |
3300028022|Ga0256382_1098094 | Not Available | 703 | Open in IMG/M |
3300028039|Ga0256380_1018318 | All Organisms → Viruses → Predicted Viral | 1138 | Open in IMG/M |
3300028039|Ga0256380_1045029 | Not Available | 680 | Open in IMG/M |
3300031757|Ga0315328_10699948 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 573 | Open in IMG/M |
3300031802|Ga0310123_10845969 | Not Available | 542 | Open in IMG/M |
3300034628|Ga0326755_005215 | All Organisms → cellular organisms → Bacteria | 1234 | Open in IMG/M |
3300034629|Ga0326756_015267 | All Organisms → cellular organisms → Bacteria | 886 | Open in IMG/M |
3300034654|Ga0326741_038300 | All Organisms → cellular organisms → Bacteria | 824 | Open in IMG/M |
3300034654|Ga0326741_085125 | All Organisms → cellular organisms → Bacteria | 519 | Open in IMG/M |
3300034656|Ga0326748_018541 | All Organisms → cellular organisms → Bacteria | 928 | Open in IMG/M |
3300034656|Ga0326748_055643 | All Organisms → cellular organisms → Bacteria | 560 | Open in IMG/M |
3300034658|Ga0326751_025092 | All Organisms → cellular organisms → Bacteria | 594 | Open in IMG/M |
Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Habitat | Taxonomy | Distribution |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 36.45% |
Deep Ocean | Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean | 29.91% |
Filtered Seawater | Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater | 6.54% |
Marine Oceanic | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic | 5.61% |
Seawater | Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater | 3.74% |
Aqueous | Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous | 2.80% |
Background Seawater | Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Background Seawater | 1.87% |
Marine | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine | 1.87% |
Marine | Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine | 1.87% |
Deep Subsurface | Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface | 1.87% |
Seawater | Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater | 0.93% |
Marine | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine | 0.93% |
Seawater | Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater | 0.93% |
Freshwater To Marine Saline Gradient | Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient | 0.93% |
Seawater | Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater | 0.93% |
Hydrothermal Vent Fluids | Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids | 0.93% |
Hydrothermal Vent Plume | Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vent Plume | 0.93% |
Seawater | Environmental → Aquatic → Marine → Strait → Unclassified → Seawater | 0.93% |
Visualization |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Taxon OID | Sample Name | Habitat Type | IMG/M Link |
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3300001683 | Hydrothermal vent plume microbial communities from Guaymas Basin, Gulf of California - IDBA assembly | Environmental | Open in IMG/M |
3300002519 | Marine viral communities from the Pacific Ocean - ETNP_2_300 | Environmental | Open in IMG/M |
3300006736 | Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG | Environmental | Open in IMG/M |
3300006738 | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG | Environmental | Open in IMG/M |
3300006750 | Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG | Environmental | Open in IMG/M |
3300006751 | Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG | Environmental | Open in IMG/M |
3300006754 | Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG | Environmental | Open in IMG/M |
3300006768 | Marine viral communities from Cariaco Basin, Caribbean Sea - 29_WHOI_OMZ | Environmental | Open in IMG/M |
3300006926 | Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG | Environmental | Open in IMG/M |
3300006927 | Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG | Environmental | Open in IMG/M |
3300006947 | Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA | Environmental | Open in IMG/M |
3300007346 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 | Environmental | Open in IMG/M |
3300007539 | Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG | Environmental | Open in IMG/M |
3300007756 | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDBack_2015_DNA CLC_assembly | Environmental | Open in IMG/M |
3300007758 | Diffuse hydrothermal flow volcanic vent microbial communities from Axial Seamount, northeast Pacific ocean - Sample CTDPlume_2015_DNA CLC_assembly | Environmental | Open in IMG/M |
3300007963 | Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2) | Environmental | Open in IMG/M |
3300008012 | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA | Environmental | Open in IMG/M |
3300008050 | Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG | Environmental | Open in IMG/M |
3300008216 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar | Environmental | Open in IMG/M |
3300008217 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 | Environmental | Open in IMG/M |
3300008218 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 | Environmental | Open in IMG/M |
3300008219 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 | Environmental | Open in IMG/M |
3300008220 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 | Environmental | Open in IMG/M |
3300008627 | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um | Environmental | Open in IMG/M |
3300009376 | Combined Assembly of Gp0137079, Gp0137080 | Environmental | Open in IMG/M |
3300009412 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 | Environmental | Open in IMG/M |
3300009413 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 | Environmental | Open in IMG/M |
3300009414 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 | Environmental | Open in IMG/M |
3300009418 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 | Environmental | Open in IMG/M |
3300009595 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3635_2500 | Environmental | Open in IMG/M |
3300009603 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 | Environmental | Open in IMG/M |
3300009604 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 | Environmental | Open in IMG/M |
3300009605 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 | Environmental | Open in IMG/M |
3300009619 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3827_250 | Environmental | Open in IMG/M |
3300009620 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 | Environmental | Open in IMG/M |
3300009622 | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 | Environmental | Open in IMG/M |
3300009703 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV12_W25 metaG | Environmental | Open in IMG/M |
3300010150 | Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG | Environmental | Open in IMG/M |
3300010151 | Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG | Environmental | Open in IMG/M |
3300010296 | Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA | Environmental | Open in IMG/M |
3300011013 | Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG | Environmental | Open in IMG/M |
3300017703 | Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG | Environmental | Open in IMG/M |
3300017715 | Marine viral communities from the Subarctic Pacific Ocean - Lowphox_06 viral metaG | Environmental | Open in IMG/M |
3300017772 | Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 53 SPOT_SRF_2014-04-10 | Environmental | Open in IMG/M |
3300020415 | Marine microbial communities from Tara Oceans - TARA_B100001146 (ERX555973-ERR599166) | Environmental | Open in IMG/M |
3300021977 | Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Hafa_FS925 _150kmer | Environmental | Open in IMG/M |
3300022227 | Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly) | Environmental | Open in IMG/M |
3300025029 | Marine viral communities from the Pacific Ocean - LP-39 (SPAdes) | Environmental | Open in IMG/M |
3300025072 | Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025097 | Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025109 | Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025114 | Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025118 | Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes) | Environmental | Open in IMG/M |
3300025125 | Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes) | Environmental | Open in IMG/M |
3300025141 | Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes) | Environmental | Open in IMG/M |
3300025218 | Marine viral communities from the Deep Pacific Ocean - MSP-103 (SPAdes) | Environmental | Open in IMG/M |
3300025241 | Marine viral communities from the Deep Pacific Ocean - MSP-121 (SPAdes) | Environmental | Open in IMG/M |
3300025251 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes) | Environmental | Open in IMG/M |
3300025264 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes) | Environmental | Open in IMG/M |
3300025277 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes) | Environmental | Open in IMG/M |
3300025300 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes) | Environmental | Open in IMG/M |
3300025301 | Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes) | Environmental | Open in IMG/M |
3300025873 | Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes) | Environmental | Open in IMG/M |
3300027838 | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) | Environmental | Open in IMG/M |
3300027865 (restricted) | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_21 | Environmental | Open in IMG/M |
3300028018 | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m | Environmental | Open in IMG/M |
3300028022 | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m | Environmental | Open in IMG/M |
3300028039 | Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m | Environmental | Open in IMG/M |
3300031757 | Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315 | Environmental | Open in IMG/M |
3300031802 | Marine microbial communities from Western Arctic Ocean, Canada - CB6_AW_1057 | Environmental | Open in IMG/M |
3300034628 | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961 | Environmental | Open in IMG/M |
3300034629 | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600 | Environmental | Open in IMG/M |
3300034654 | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244 | Environmental | Open in IMG/M |
3300034656 | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 502_2477 | Environmental | Open in IMG/M |
3300034658 | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 524_CTD | Environmental | Open in IMG/M |
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
GBIDBA_100303831 | 3300001683 | Hydrothermal Vent Plume | LHDAMEQAVIEAEHRKPMVVLHQKQMKYEDSYIVLKLKDFKEITDDDS* |
JGI25130J35507_10829151 | 3300002519 | Marine | SAMKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG* |
Ga0098033_12277391 | 3300006736 | Marine | HRVPMVVLHEKQMKYEDCYVIVRLKHFKEIVNDKTDYLTEEL* |
Ga0098035_11753963 | 3300006738 | Marine | DAMAQAVLEAEHRVPIIVLHEKQMKYEDSYVVIKIKDFKEITNEQ* |
Ga0098058_10977893 | 3300006750 | Marine | KQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG* |
Ga0098058_11346443 | 3300006750 | Marine | KQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDESIK* |
Ga0098058_11446351 | 3300006750 | Marine | EIEAEHRTPMVVLHEKQMKYEDCYVIVRLKHFKEITDE* |
Ga0098040_10883721 | 3300006751 | Marine | EHRTPMVVLHEKQMKYEDCYVIVRLKHFKEITDE* |
Ga0098044_12935601 | 3300006754 | Marine | EAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDESIK* |
Ga0098071_1195551 | 3300006768 | Marine | QAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEIDNEQQEGVSDGVSKG* |
Ga0098057_10848643 | 3300006926 | Marine | AMKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG* |
Ga0098034_10268703 | 3300006927 | Marine | MEQAIIEAEHRVPMVVLHEKQMKYEDCYVIVRLKHFKEIVN |
Ga0098034_11089563 | 3300006927 | Marine | EQAIIEAEHRVPMVVLHEKQMKYEDCYVIVRLKHFKEIVNDKTDYLTEEL* |
Ga0098034_12260701 | 3300006927 | Marine | AIIEAEHRVPIVVLHEKQMKYENSLVVLRLKDFKEMTNEYDKTPDV* |
Ga0098034_12279332 | 3300006927 | Marine | EQAIIEAEHRVPMVVLHEKQMKYEDCYVIVRLKHFKEIVNEHEERVSD* |
Ga0075444_102011591 | 3300006947 | Marine | PIIVLHEKQMKYEDSYVVIKIKDFKEITDEQNTI* |
Ga0070753_12800121 | 3300007346 | Aqueous | EHRIPIVVLHEKQMKYEDSYVIIKIKDFKEITNEQKMDTTD* |
Ga0099849_12337521 | 3300007539 | Aqueous | AMAQAILEAEHRIPIVVLHEKQMKYEDSYVIIKIKDFKEITNAQSN* |
Ga0105664_10186102 | 3300007756 | Background Seawater | MKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFK |
Ga0105668_10919792 | 3300007758 | Background Seawater | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEMTDEQEKSKE* |
Ga0110931_10239324 | 3300007963 | Marine | MDQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSDGVGKG* |
Ga0110931_10644171 | 3300007963 | Marine | QAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEITDDKADCFAE* |
Ga0075480_105567771 | 3300008012 | Aqueous | MHDAMAQAILEAEHRIPIVVLHEKQMKYEDSYVIIKIKDFKEITNEQPD* |
Ga0098052_12967821 | 3300008050 | Marine | LHSAMKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEITDGEEN* |
Ga0098052_13682923 | 3300008050 | Marine | SAMKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEITDDKADCFAE* |
Ga0114898_11559491 | 3300008216 | Deep Ocean | MDQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEIDNEQQEGVSDGVSKG* |
Ga0114898_11863962 | 3300008216 | Deep Ocean | EAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0114899_11906923 | 3300008217 | Deep Ocean | AIIEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0114899_11908083 | 3300008217 | Deep Ocean | AMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0114904_11502011 | 3300008218 | Deep Ocean | KQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNDKADCFPK* |
Ga0114905_10999654 | 3300008219 | Deep Ocean | SMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0114905_12393301 | 3300008219 | Deep Ocean | MAQAEIEAEHRTPMVVLHEKQMKYEDCYVVVRLKHFKEITDE* |
Ga0114910_11512923 | 3300008220 | Deep Ocean | KQAIIEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0115656_11647551 | 3300008627 | Marine | EHRVPIVVLHEKQMKYEDSYVILKIKDFKEITDESVETKN* |
Ga0118722_13647612 | 3300009376 | Marine | MKQAIIEAEHRVPMVVLHEKQMKYDDSYVVMRLKDFKEITDG* |
Ga0114903_10493624 | 3300009412 | Deep Ocean | KQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0114903_11088762 | 3300009412 | Deep Ocean | MKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQEGVSDGVSKG* |
Ga0114903_11120592 | 3300009412 | Deep Ocean | KQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSE* |
Ga0114902_11268753 | 3300009413 | Deep Ocean | SMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSE* |
Ga0114909_10842932 | 3300009414 | Deep Ocean | MAQAEIEAEHRTPMVVLHEKQMKYEDCYVVVRLKDFKEITDE* |
Ga0114909_11350291 | 3300009414 | Deep Ocean | WLHSSMKQAIIEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0114908_11671703 | 3300009418 | Deep Ocean | HRKNLPEWLHSSMKQAIIEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0114908_11855281 | 3300009418 | Deep Ocean | MKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSE* |
Ga0105214_1035682 | 3300009595 | Marine Oceanic | MDQAIIEAEHRVPIVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVYDAVGSG* |
Ga0114911_11020031 | 3300009603 | Deep Ocean | MKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEIDNG* |
Ga0114901_11780721 | 3300009604 | Deep Ocean | IEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0114906_11119122 | 3300009605 | Deep Ocean | MEQAIIEAEHRVPMVVLHEKQMKYEDCYVIVKLKHFKEIVNDKTDYLTEEL* |
Ga0114906_12062961 | 3300009605 | Deep Ocean | MDQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSD* |
Ga0105236_10392592 | 3300009619 | Marine Oceanic | MHDAMEQAVLEAEHRKPIVVLHQKQMKYEDSYIVLKLKD |
Ga0105236_10438372 | 3300009619 | Marine Oceanic | WLHDAMNQAIIEAEHRVPLVVLHEKQMKYEDSYILLKLKDFKGITDEQQERVSE* |
Ga0105236_10619242 | 3300009619 | Marine Oceanic | MKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQERVSDGVSK |
Ga0114912_10708041 | 3300009620 | Deep Ocean | HSAMKQAEIEAEHRVPIVVLHEKNLTYEDSYVIMRLNNFTKETDNAK* |
Ga0114912_11140901 | 3300009620 | Deep Ocean | AEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG* |
Ga0105173_10159512 | 3300009622 | Marine Oceanic | MDQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDGEEN* |
Ga0105173_10281181 | 3300009622 | Marine Oceanic | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0114933_109283093 | 3300009703 | Deep Subsurface | AEHRVPIVVLHEKQMKYEDSYVILKIKDFKEITDESIQED* |
Ga0098056_12026791 | 3300010150 | Marine | MKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQERVSDGVSKG* |
Ga0098056_12372261 | 3300010150 | Marine | QAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEITDDKADCFPE* |
Ga0098061_10634382 | 3300010151 | Marine | MKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG* |
Ga0129348_12071161 | 3300010296 | Freshwater To Marine Saline Gradient | EHRIPIVVLHEKQMKYEDSYVIIKIKDFKEITNEQPD* |
Ga0114934_100823714 | 3300011013 | Deep Subsurface | MDQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG* |
Ga0181367_10344384 | 3300017703 | Marine | SAMKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQERVSDGVGKG |
Ga0181367_10431433 | 3300017703 | Marine | SAMKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEITDG |
Ga0181367_10546303 | 3300017703 | Marine | EHRVPIIVLHEKQMKYEDSYVVIKIKDFKEITNEQ |
Ga0181370_10298491 | 3300017715 | Marine | QAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQERVSD |
Ga0181430_11049974 | 3300017772 | Seawater | EHRVPIVVLHEKQMKYEDSYVILKIKDFKEITDESIQEN |
Ga0211553_104260102 | 3300020415 | Marine | MDQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSD |
Ga0232639_11754781 | 3300021977 | Hydrothermal Vent Fluids | MEQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG |
Ga0187827_103958201 | 3300022227 | Seawater | MKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG |
Ga0207900_1035583 | 3300025029 | Marine | AEHRVPMVVLHEKQMKYEDSYVILRLKDFKEMTDG |
Ga0208920_10779121 | 3300025072 | Marine | EIEAEHRTPMVVLHEKQMKYEDCYVIVRLKHFKEITDE |
Ga0208010_10048861 | 3300025097 | Marine | HDAMEQAVIEAEHRKPMVVLHQKQMKYEDSYIVLKLKDFKEITDDNS |
Ga0208553_11086663 | 3300025109 | Marine | IIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG |
Ga0208433_11192163 | 3300025114 | Marine | MKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDESIK |
Ga0208790_11750822 | 3300025118 | Marine | IEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDESIK |
Ga0209644_10438771 | 3300025125 | Marine | SAMEQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITNDKADCFPK |
Ga0209644_11203653 | 3300025125 | Marine | MNQAILDAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEIADGKER |
Ga0209756_11406833 | 3300025141 | Marine | AMKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDESIK |
Ga0209756_12365021 | 3300025141 | Marine | AMKQAIIEAEHRVPMVVLHEKQMKYDDSYVILRLKDFKEITDG |
Ga0207882_10081554 | 3300025218 | Deep Ocean | SAMNQAILDAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEITDDKADCFPE |
Ga0207893_10309803 | 3300025241 | Deep Ocean | LDAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEIADVQ |
Ga0208182_10417431 | 3300025251 | Deep Ocean | SSMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNDKADCFPK |
Ga0208182_10709433 | 3300025251 | Deep Ocean | SSMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDEQQERVSE |
Ga0208029_10428541 | 3300025264 | Deep Ocean | MKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNDKADCFPK |
Ga0208029_10483724 | 3300025264 | Deep Ocean | ILEAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEISDE |
Ga0208180_10425234 | 3300025277 | Deep Ocean | SSMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNEQQERVSDRISKR |
Ga0208180_11119632 | 3300025277 | Deep Ocean | IEAEHRVPMVVLHEKQMKYEDSYVVLRLKDFKEITDG |
Ga0208181_11030103 | 3300025300 | Deep Ocean | AIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNDKADCFPK |
Ga0208450_10702231 | 3300025301 | Deep Ocean | HSAMKQAIIEAEHRVPMVVLHEKQMKYDESYVILRLKDFKEIENEQQERVSDGVSKG |
Ga0209757_100844884 | 3300025873 | Marine | IEAEHRKPMVVLHQKQMKYEDSYIVLKLKDFKEITDADS |
Ga0209757_101110823 | 3300025873 | Marine | AVIEAEHRKPMVVLHQKQMKYEDSYIVLKLKDFKEITDDHS |
Ga0209757_103014962 | 3300025873 | Marine | QAILDAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEIADEQQERVSE |
Ga0209089_101536851 | 3300027838 | Marine | SLPQWMHDAMDQAVLEAEHRKPIVVLHQKQMKYEDSYIVLKLKDFKEITDDNS |
(restricted) Ga0255052_104045701 | 3300027865 | Seawater | EHRKPVVVLHQKQMKYEDSYIVLKLKDFKEITDDNS |
Ga0256381_10527171 | 3300028018 | Seawater | IEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITDG |
Ga0256382_10980941 | 3300028022 | Seawater | AEIEAEHRKPVVVLHEKQMKYEDCYVVVRLKHFKEITDEYEERVSD |
Ga0256380_10183185 | 3300028039 | Seawater | HRVPMVVLHEKQMKYEDSYVILRLKDFKEITNDKADCFPK |
Ga0256380_10450291 | 3300028039 | Seawater | EHRKPVVVLHQKQMKYEDSYIVLKLKDFREITDDNS |
Ga0315328_106999483 | 3300031757 | Seawater | MAQAVLEAEHRVPIIVLHEKQMKYEDSYVVIKIKDFKEITDEQNTI |
Ga0310123_108459691 | 3300031802 | Marine | HSAMKQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEITNEQQERVSDGVGKG |
Ga0326755_005215_119_268 | 3300034628 | Filtered Seawater | MEQAVIEAEHRKPMVVLHQKQMKYEDSYIVLKLKDFKEIEDGQQERLSN |
Ga0326756_015267_112_276 | 3300034629 | Filtered Seawater | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEIANEQQERVSDRTGKG |
Ga0326741_038300_635_784 | 3300034654 | Filtered Seawater | MEQATIEAEHRTPMVVLHEKQMKYEDCYVIVRLKHFKEIADEQQERVSN |
Ga0326741_085125_241_387 | 3300034654 | Filtered Seawater | MHDAMEQAVLEAEHRKPIVVLHQKQMKYEDSYIVLKLKDFKEITDDNS |
Ga0326748_018541_334_498 | 3300034656 | Filtered Seawater | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVVVRLKDFKEITNEQQERVSDGTGKG |
Ga0326748_055643_375_506 | 3300034656 | Filtered Seawater | MNQAILDAEHRVPLVVLHEKQMKYEDSYILLKLKDFKEIADEQ |
Ga0326751_025092_134_298 | 3300034658 | Filtered Seawater | MEQAIIEAEHRVPMVVLHEKQMKYEDSYVILRLKDFKEIDNEQQERVSDGTGKG |
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