Metagenome Family F091828

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F091828
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	60 residues
Representative Sequence	MTAVTPETVSEQTAEPRPGTLARRLASLLVRIRTAAGEDLQATIARAIDDAFAGIHREMR
Number of Associated Samples	80
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	79.25 %
% of genes near scaffold ends (potentially truncated)	34.58 %
% of genes from short scaffolds (< 2000 bps)	73.83 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (91.589 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.430 % of family members)
Environment Ontology (ENVO)	Unclassified (28.972 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (42.056 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.05% β-sheet: 0.00% Coil/Unstructured: 57.95%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF07859	Abhydrolase_3	21.50
PF05875	Ceramidase	4.67
PF03948	Ribosomal_L9_C	3.74
PF03796	DnaB_C	3.74
PF01425	Amidase	3.74
PF01329	Pterin_4a	1.87
PF04140	ICMT	1.87
PF02782	FGGY_C	1.87
PF07298	NnrU	1.87
PF01084	Ribosomal_S18	0.93
PF01464	SLT	0.93
PF12697	Abhydrolase_6	0.93
PF08386	Abhydrolase_4	0.93
PF13417	GST_N_3	0.93
PF12704	MacB_PCD	0.93
PF14497	GST_C_3	0.93
PF00067	p450	0.93
PF12146	Hydrolase_4	0.93
PF04191	PEMT	0.93
PF13090	PP_kinase_C	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	21.50
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	3.74
COG0305	Replicative DNA helicase	Replication, recombination and repair [L]	3.74
COG0359	Ribosomal protein L9	Translation, ribosomal structure and biogenesis [J]	3.74
COG1066	DNA repair protein RadA/Sms, contains AAA+ ATPase domain	Replication, recombination and repair [L]	3.74
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	1.87
COG4094	Uncharacterized membrane protein	Function unknown [S]	1.87
COG0238	Ribosomal protein S18	Translation, ribosomal structure and biogenesis [J]	0.93
COG2124	Cytochrome P450	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.47 %
Unclassified	root	N/A	8.41 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	4.67 %

Name	Rank	Taxonomy	Distribution
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	38.32 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	4.67 %

Name	Rank	Taxonomy	Distribution
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	38.32 %
Unclassified	root	N/A	8.41 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	4.67 %

Name	Rank	Taxonomy	Distribution
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	36.45 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.67 %

Name	Rank	Taxonomy	Distribution
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	31.78 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.67 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	28.97 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.67 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	2.80 %

Name	Rank	Taxonomy	Distribution
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	28.97 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.67 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.93 %

Name	Rank	Taxonomy	Distribution
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	28.97 %
Unclassified	root	N/A	8.41 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	4.67 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT02G3G86	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	524	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c2337695	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1612	Open in IMG/M
3300001990\|JGI24737J22298_10147060	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	696	Open in IMG/M
3300002076\|JGI24749J21850_1005519	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1771	Open in IMG/M
3300003659\|JGI25404J52841_10002061	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	3724	Open in IMG/M
3300003659\|JGI25404J52841_10006131	All Organisms → cellular organisms → Bacteria	2504	Open in IMG/M
3300004114\|Ga0062593_100485366	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1139	Open in IMG/M
3300005093\|Ga0062594_100015844	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2963	Open in IMG/M
3300005332\|Ga0066388_100107214	All Organisms → cellular organisms → Bacteria → Proteobacteria	3278	Open in IMG/M
3300005332\|Ga0066388_100880954	All Organisms → cellular organisms → Bacteria → Proteobacteria	1476	Open in IMG/M
3300005332\|Ga0066388_101620965	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300005332\|Ga0066388_102780381	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005332\|Ga0066388_103289248	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	826	Open in IMG/M
3300005332\|Ga0066388_107500586	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	547	Open in IMG/M
3300005366\|Ga0070659_100000517	All Organisms → cellular organisms → Bacteria → Proteobacteria	28368	Open in IMG/M
3300005439\|Ga0070711_100768565	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	815	Open in IMG/M
3300005455\|Ga0070663_100508016	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1002	Open in IMG/M
3300005530\|Ga0070679_100146019	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2343	Open in IMG/M
3300005547\|Ga0070693_100004764	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	6459	Open in IMG/M
3300005764\|Ga0066903_104872182	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300005983\|Ga0081540_1000254	All Organisms → cellular organisms → Bacteria	56367	Open in IMG/M
3300006755\|Ga0079222_10183102	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1237	Open in IMG/M
3300006854\|Ga0075425_101271551	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	835	Open in IMG/M
3300007076\|Ga0075435_100324991	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1317	Open in IMG/M
3300009094\|Ga0111539_10045000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	5285	Open in IMG/M
3300009168\|Ga0105104_10000665	All Organisms → cellular organisms → Bacteria → Proteobacteria	26506	Open in IMG/M
3300009792\|Ga0126374_10029889	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2537	Open in IMG/M
3300009792\|Ga0126374_10854212	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300010043\|Ga0126380_12163775	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300010046\|Ga0126384_12465064	Not Available	504	Open in IMG/M
3300010048\|Ga0126373_10789102	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1011	Open in IMG/M
3300010048\|Ga0126373_11064294	Not Available	875	Open in IMG/M
3300010360\|Ga0126372_10329034	All Organisms → cellular organisms → Bacteria → Proteobacteria	1359	Open in IMG/M
3300010360\|Ga0126372_10739986	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	966	Open in IMG/M
3300010360\|Ga0126372_12096635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	613	Open in IMG/M
3300010360\|Ga0126372_12937625	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300010361\|Ga0126378_10559063	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300010361\|Ga0126378_11878720	Not Available	682	Open in IMG/M
3300010362\|Ga0126377_10898752	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300010371\|Ga0134125_10730900	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1091	Open in IMG/M
3300010376\|Ga0126381_100229269	All Organisms → cellular organisms → Bacteria → Proteobacteria	2502	Open in IMG/M
3300010376\|Ga0126381_100616944	All Organisms → cellular organisms → Bacteria	1544	Open in IMG/M
3300010376\|Ga0126381_101071246	All Organisms → cellular organisms → Bacteria → Proteobacteria	1164	Open in IMG/M
3300010376\|Ga0126381_101447452	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	993	Open in IMG/M
3300010398\|Ga0126383_10690805	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300010400\|Ga0134122_10002145	All Organisms → cellular organisms → Bacteria → Proteobacteria	14443	Open in IMG/M
3300010401\|Ga0134121_10004568	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11322	Open in IMG/M
3300012955\|Ga0164298_11126202	Not Available	589	Open in IMG/M
3300012971\|Ga0126369_11475522	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300012986\|Ga0164304_10581813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	832	Open in IMG/M
3300014969\|Ga0157376_12760140	Not Available	531	Open in IMG/M
3300015371\|Ga0132258_10184680	All Organisms → cellular organisms → Bacteria	5045	Open in IMG/M
3300015371\|Ga0132258_10202914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	4811	Open in IMG/M
3300015372\|Ga0132256_100199691	All Organisms → cellular organisms → Bacteria	2045	Open in IMG/M
3300015372\|Ga0132256_100522166	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1299	Open in IMG/M
3300015372\|Ga0132256_100612598	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1203	Open in IMG/M
3300015372\|Ga0132256_101575303	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300015374\|Ga0132255_100229142	All Organisms → cellular organisms → Bacteria	2645	Open in IMG/M
3300016341\|Ga0182035_10786724	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300018064\|Ga0187773_10258355	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	955	Open in IMG/M
3300021377\|Ga0213874_10277970	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300021445\|Ga0182009_10008463	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3464	Open in IMG/M
3300021560\|Ga0126371_11030972	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300021560\|Ga0126371_12530230	Not Available	621	Open in IMG/M
3300021560\|Ga0126371_13040308	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	568	Open in IMG/M
3300025899\|Ga0207642_10288378	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	947	Open in IMG/M
3300025920\|Ga0207649_10045259	All Organisms → cellular organisms → Bacteria	2697	Open in IMG/M
3300025931\|Ga0207644_10104747	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2130	Open in IMG/M
3300025944\|Ga0207661_11221401	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300025945\|Ga0207679_11641535	Not Available	589	Open in IMG/M
3300027743\|Ga0209593_10018366	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2845	Open in IMG/M
3300031543\|Ga0318516_10026136	All Organisms → cellular organisms → Bacteria → Proteobacteria	3040	Open in IMG/M
3300031543\|Ga0318516_10104386	All Organisms → cellular organisms → Bacteria	1604	Open in IMG/M
3300031543\|Ga0318516_10242918	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300031546\|Ga0318538_10454797	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300031572\|Ga0318515_10340789	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300031680\|Ga0318574_10184069	All Organisms → cellular organisms → Bacteria → Proteobacteria	1196	Open in IMG/M
3300031681\|Ga0318572_10146702	All Organisms → cellular organisms → Bacteria → Proteobacteria	1361	Open in IMG/M
3300031681\|Ga0318572_10489048	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031713\|Ga0318496_10525813	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	654	Open in IMG/M
3300031719\|Ga0306917_11489351	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300031720\|Ga0307469_11270501	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	698	Open in IMG/M
3300031720\|Ga0307469_11724246	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	604	Open in IMG/M
3300031765\|Ga0318554_10533284	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	663	Open in IMG/M
3300031769\|Ga0318526_10178948	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031779\|Ga0318566_10348694	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	731	Open in IMG/M
3300031781\|Ga0318547_10274007	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1021	Open in IMG/M
3300031794\|Ga0318503_10285204	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	536	Open in IMG/M
3300031805\|Ga0318497_10508918	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031831\|Ga0318564_10021416	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	2686	Open in IMG/M
3300031833\|Ga0310917_10447102	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300031890\|Ga0306925_10124760	All Organisms → cellular organisms → Bacteria → Proteobacteria	2757	Open in IMG/M
3300031897\|Ga0318520_10204125	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300031944\|Ga0310884_10130010	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1275	Open in IMG/M
3300031944\|Ga0310884_10423599	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300032001\|Ga0306922_11837137	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300032054\|Ga0318570_10561136	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300032065\|Ga0318513_10054673	All Organisms → cellular organisms → Bacteria → Proteobacteria	1796	Open in IMG/M
3300032066\|Ga0318514_10558626	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300032067\|Ga0318524_10499820	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	638	Open in IMG/M
3300032075\|Ga0310890_11787913	Not Available	511	Open in IMG/M
3300032090\|Ga0318518_10733587	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	502	Open in IMG/M
3300032261\|Ga0306920_100144774	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
3300032770\|Ga0335085_10107520	All Organisms → cellular organisms → Bacteria	3589	Open in IMG/M
3300033289\|Ga0310914_10790772	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300034819\|Ga0373958_0093851	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	696	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.70%
Host-Associated	Host-Associated	23.36%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.83%
Plants	Host-Associated → Plants	23.36%
Aquatic	Environmental → Aquatic	1.87%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.35%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Roots	Host-Associated → Plants → Roots	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.68%
Loam	Environmental → Terrestrial → Soil → Loam	10.28%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.97%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.74%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.87%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.43%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	20.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.67%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	3.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002076	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3	Host-Associated	Open in IMG/M
3300003659	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_00469530	2170459016	Switchgrass, Maize And Mischanthus Litter	MTAVSSEAVSKQNIEPCLGVMARLAALLVRIRSTAGEDLHATMARAIDQAFAGIAREYRR
ICChiseqgaiiDRAFT_23376951	3300000033	Soil	MTAVSSETVSKQNVEPRLAVLARRLAALLVQVRSSAGEDLQATMARAIDQAFAGIAREYRR*
JGI24737J22298_101470602	3300001990	Corn Rhizosphere	VTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR*
JGI24749J21850_10055193	3300002076	Corn, Switchgrass And Miscanthus Rhizosphere	RRTGMPGGSRREQHMTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR*
JGI25404J52841_100020613	3300003659	Tabebuia Heterophylla Rhizosphere	MTAVTPETVPEQTAESRRSTLVRRLTSLLARIQTAAKEENLKTTVARAIDEAFAGFHREMR*
JGI25404J52841_100061313	3300003659	Tabebuia Heterophylla Rhizosphere	MTAVSSEAVSKQTFHPRLGVLAGRLAALLVRIRNTAGEDLQATVARAIDEAFAGIAREYR
Ga0062593_1004853661	3300004114	Soil	MTAVTPETVSEQTLAPRPGTLARRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0062594_1000158444	3300005093	Soil	MTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAF
Ga0066388_1001072142	3300005332	Tropical Forest Soil	MTAVTPETLPEQTAEPRLGTVARRLMALLVRIRTAAGEDLQTTVARAVEEAFAGFHREMR
Ga0066388_1008809542	3300005332	Tropical Forest Soil	MTAVTSETVSEQTTESRLGTLARRLTSLLARIRTAAAEEDLKVTVARAIDEAFAGFHREMR*
Ga0066388_1016209652	3300005332	Tropical Forest Soil	MTAVTPEAVSEQAAEPRSGILARRLTSLLVRIRTAAGEDLQTTVARAIDEAFVGLHREMR
Ga0066388_1027803812	3300005332	Tropical Forest Soil	MTAVSPETLSEKTAERRPGPVARRLMALLVRIKTAAGEDLHTTVAHAIEEAFAGFHREMR
Ga0066388_1032892482	3300005332	Tropical Forest Soil	MTAVTHETVSEQTSEPRPGTLARRLASLLVRIRTAAGEDLQATIARGIDEAFAGIHREMR
Ga0066388_1075005862	3300005332	Tropical Forest Soil	MTAVTPEAVTKLNVEPRLAVLARRLAALLVQVRSTAGEDLQATMARAIDQAFAGIAREYRR*
Ga0070659_1000005171	3300005366	Corn Rhizosphere	GMPGGSRREQHMTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR*
Ga0070711_1007685652	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREM
Ga0070663_1005080162	3300005455	Corn Rhizosphere	MTAVTPETASEQTFEPRPGTLARRLAALLVRVRATAGEDLQSTIARAIDDAFAGIHREMR
Ga0070679_1001460191	3300005530	Corn Rhizosphere	MTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQST
Ga0070693_1000047644	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MTAVTPDAVSEQTLAPRPGTLARRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0066903_1048721822	3300005764	Tropical Forest Soil	MTAVTPETVSEQPAEPRPGTLVHRLTSLLVRLRTAAGEDVQTTIARAIEEAFAGIHREMR
Ga0081540_100025415	3300005983	Tabebuia Heterophylla Rhizosphere	MTAVTSETVSEQTAEPRPGTLARRLGSLLVRIRAAAGEDLQSTIARGIDEAFAGIHREMR
Ga0081540_10152284	3300005983	Tabebuia Heterophylla Rhizosphere	MTAVTPEAVSEQLAEPRPGILARRLAALLVAIRASAGEGLEATIARNIDEAFASLHREMR
Ga0079222_101831021	3300006755	Agricultural Soil	MTAVTPETASEQTFEPRSDTLARRLAALLVRLRATAGEDLQSTIARAIDDAFAGIHREMR
Ga0075425_1012715512	3300006854	Populus Rhizosphere	RPRMEKHMTAVTPEAVSEQRAEPRPGTLARRLAALLVAIRASAGEGLEATIARSIDEAFASLHREMR*
Ga0075435_1003249911	3300007076	Populus Rhizosphere	REQHMTAVTPETASEQTFEPRPGALARRLAALLVRVRATAGEDLQSTIARAIDDAFAGIHREMR*
Ga0111539_100450008	3300009094	Populus Rhizosphere	MEQHMTAVTPETLSEQTAESRRGTLFRRLTSLLAGLWTADGEDLKTTVARAIDEAFAGIHREMR*
Ga0105104_100006658	3300009168	Freshwater Sediment	MTAVSPETVSKQSLEPRLEVLARRLTALLVRIRSTAGEDFQATMARAIDEAFAGIAREYRR*
Ga0126374_100298893	3300009792	Tropical Forest Soil	MEPHMTAATPETLSEQTAAPRLGAVSRRLMALLVRIRTAAGEDLQTTVARAVEEAFASFHREMR*
Ga0126374_108542122	3300009792	Tropical Forest Soil	MTAVTPETVSATPGPRPGFLSSCLALLLVRIRSAAQEDLRTTVARAIEEAFAGFHREMR*
Ga0126380_121637751	3300010043	Tropical Forest Soil	MEQHMTAVTPETVSEQTAESCRGTLARCLTSLLVRIRTAAGEDLQATIARAIDEAFAGLHREMR*
Ga0126384_124650641	3300010046	Tropical Forest Soil	MTAVTPATVSEKSTELRPGTLARRLAALLVQIRTAAGEDFQATVARAVDEAFAGIHREMR
Ga0126373_107891022	3300010048	Tropical Forest Soil	MEQHMTAVTPETVSRQTAESRLGTLARRLTSVLARIRTTAAEEDLKATVARAIDEAFAGFHREMR*
Ga0126373_110642942	3300010048	Tropical Forest Soil	MTAVTPEIVSEQTAEPHPGTLARLASMLVRIRAAAGEDLQTTVARAIDEAFAG
Ga0126372_103290342	3300010360	Tropical Forest Soil	MEPHMTAVTPETLPEQTAEPRLGTVARRLMALLVRIRTAAGEDLQTTVARAVEEAFAGFHREMR*
Ga0126372_107399861	3300010360	Tropical Forest Soil	MTAVTPEIVSEQTAKPRPGTLARLASLLVQIRTAAGEDLQATVARAIDNAFAGIHREMR*
Ga0126372_120966351	3300010360	Tropical Forest Soil	MTAVTPATVSEKSTELRPGTLARRLAALLVQIRTAAGEDFQATIARAVDEAFAGIHREMR
Ga0126372_129376252	3300010360	Tropical Forest Soil	MTAVTPETVCATAGPRPGFLSSCLALLLVRIRSAAREDLRTTVARAIEEAFAGLHREMR*
Ga0126378_105590632	3300010361	Tropical Forest Soil	MEQHMTAVTPETVSEQTAEPRSGTVARCLTSLLVRIRTAAGEDLQATIARAIDEAFAGLHREMR*
Ga0126378_118787201	3300010361	Tropical Forest Soil	MTAVTSATVSEQTTEPRPGTFARLASLLVRIRSAAGEELQATVARAIDEAFAGIHREMR*
Ga0126377_108987521	3300010362	Tropical Forest Soil	MEQHMTAVTPETVSEQTAESCRGTLARCLTSLLARIRTAGEEDLKTTVARAIDEAFAGFHREMR*
Ga0134125_107309002	3300010371	Terrestrial Soil	MTAVTPDAVSEQTLAPRPGTLALRLAALLVRLRTTAGEDLQSTIARAIDDAFAGI
Ga0126381_1002292692	3300010376	Tropical Forest Soil	MTAVTSATASEQTTEPRPGTFARLASLLVWIRGAAGEDLRVTVARAIDEAFAGIHREMR*
Ga0126381_1006169443	3300010376	Tropical Forest Soil	MEQHMTAVTPETVSEQTTEPRPGTLARRLTSLLVRIRTAIGEDLQTTVARAIDEAFVGFHREMR*
Ga0126381_1010712461	3300010376	Tropical Forest Soil	QHMTAVTPETVSEQTAEPRSGTVARCLTSLLVRIRTAAGEDLQATIARAIDEAFAGLHREMR*
Ga0126381_1014474521	3300010376	Tropical Forest Soil	MTAVTPETVSEQTSEPRPGTLARRLASLLVRIRTAAGEDLQATIARGIDEAFAGIHREMR
Ga0126383_106908052	3300010398	Tropical Forest Soil	MEQHMTAVTPETVSEQTTEPRPGTLARRLTSLLVRIRTAVGEDLQTTVARAIDEAFVGFHREMR*
Ga0134122_100021452	3300010400	Terrestrial Soil	MTAVTPDAVSEQTLAPRPGTLARRLAAMLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0134121_100045681	3300010401	Terrestrial Soil	HMTAVTPEAVSEQTLAPRPGTLAHRLAALLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR*
Ga0164298_111262021	3300012955	Soil	MTAVTPDAVSEQTLAPRPGTLARRLAALLVRLRTTAGEDLQSPIARAIDDAFAGIHREMR
Ga0126369_114755222	3300012971	Tropical Forest Soil	MTAVTPETVSEQTAEPRSGTVARCLTSLLVRIRTAAGEDLQATIARAIDEAFAG
Ga0164304_105818132	3300012986	Soil	MTAVTPDAVSEQTLAPRPGTLARRLAAMPVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0157376_127601401	3300014969	Miscanthus Rhizosphere	MEQHMTAVTPETVTEQTSEPRPGTLAHRLVALLVRLRTPAAEDFQSTIARPIEDAFAGIH
Ga0132258_101846803	3300015371	Arabidopsis Rhizosphere	MEQHMTAVTPETVSEQTTERGADTLARRLATLLLRIRTAAGEDFQTTIARAVDEAFAGIHREMR*
Ga0132258_102029146	3300015371	Arabidopsis Rhizosphere	MEHHMTAVTPETVSEPAEPRPGFLARCLASLLVRIRSTAKEDLRTTVARAVEEAFAGFHREMR*
Ga0132256_1001996913	3300015372	Arabidopsis Rhizosphere	MEHHMTAVTPETVSEPAEPRPGFLARCLASLLVRIRSTAREDLRTTVARAVEEAFAGFHREMR*
Ga0132256_1005221661	3300015372	Arabidopsis Rhizosphere	MEQHMTAVTPETVSEQTTERGADTFARRLATLLLRIRTAAGEDFQTTIARAVDEAFAGIHREMR*
Ga0132256_1006125981	3300015372	Arabidopsis Rhizosphere	MTAVSSEAVSKQNIEPCLGVMARLAALLVRIRSTAGEDLHATMARAIDQA
Ga0132256_1015753032	3300015372	Arabidopsis Rhizosphere	MEQHMTAVTPETLSEQTAESRRGTLFRRLTSLLAGLWTADGEDLKTTVARAIDEAFAGIHREMRGQQSVERA
Ga0132255_1002291421	3300015374	Arabidopsis Rhizosphere	HMTAVTPETVSEPAEPRPGFLARCLASLLVRIRSTAREGLRTTVARAVEEAFAGFHREMR
Ga0182035_107867242	3300016341	Soil	MTAVTPETVSEEAAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0187773_102583551	3300018064	Tropical Peatland	MTAVTPETVSEQTFEPRPGTLARRLASLLVRIRTAAGEDLQTTIARGIDEAFAGIHREMR
Ga0213874_102779702	3300021377	Plant Roots	MTAVTPETVSEPAEPRSVSLARRLASLLVRIRSTAGEDLRTTVARAIDEAFAGFHREIR
Ga0182009_100084633	3300021445	Soil	MTAVTPEAVSEQTLAPRPGTLARRLAGLLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0126371_110309722	3300021560	Tropical Forest Soil	MTVVTPEAVSEQAAEPRSGILARRLTSLLVRIRTAAGEDLKTTVARAIDEAFAGLHREMR
Ga0126371_125302302	3300021560	Tropical Forest Soil	MTAVTPEIVSEQTAKPRPGTLARMASLLVQIRTAAGEDLQATVARAIDDAFAGIHREMR
Ga0126371_130403082	3300021560	Tropical Forest Soil	PETVSEQPAEPRPGTLVHRLTSLLVRLRTAAGEDVQTTIARAIEEAFAGIHREMR
Ga0207642_102883781	3300025899	Miscanthus Rhizosphere	HMTAVTPETVSEQTSEPRPGTLAHRLAALLVRLRTTAGEDFQSTIARAIDEAFAGIHREM
Ga0207649_100452592	3300025920	Corn Rhizosphere	MTAVTPETLSEQTAESRRGTLFRRLTSLLAGLWTADGEDLKTTVARAIDEAFTGIHREMR
Ga0207644_101047473	3300025931	Switchgrass Rhizosphere	MTAVTPETVTEQTSEPRPGTLAHRLVALLVRLRTTAGEDFQSTMARAIDDAFAGIHREMR
Ga0207661_112214012	3300025944	Corn Rhizosphere	MTAVTPETLSEQTAESRRGTLFRRLTSLLAGLWTADGEDLKTTVARAIDEAFAGIHREMR
Ga0207679_116415351	3300025945	Corn Rhizosphere	MTAVTPETASEQTFEPRPGTLARRLAALLVRLRATAGEDLQSTIARAIDDAFAGIHREMR
Ga0209593_100183665	3300027743	Freshwater Sediment	MTAVSPETVSKQSLEPRLEVLARRLTALLVRIRSTAGEDFQATMARAIDEAFAGIAREYR
Ga0318516_100261362	3300031543	Soil	MTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFVGLHREMR
Ga0318516_101043862	3300031543	Soil	MTAVTPETVSEQTTEPRPGTLARRLTSLLVRIRTAVGEDLQTTIARAIDEAFVGIHREMR
Ga0318516_102429182	3300031543	Soil	MTAVTPETVSEQAAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0318538_104547972	3300031546	Soil	MTAVTPETVSEEAAETRSGTLARRLTSLLVRIRTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0318515_103407891	3300031572	Soil	MTAVTPETVSEQSAELRPGTIARCLTSLLVRIRTAAEEDMQTKIARGIDEAFAGLHREMR
Ga0318574_101840693	3300031680	Soil	PGDTCMEQHMTAVTPETVSEQAAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0318572_101467021	3300031681	Soil	MTAVTPETVSEQAAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIE
Ga0318572_104890481	3300031681	Soil	CMEQHMTAVTPETVSEEAAETRSGTLARRLTSLLVRIRTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0318496_105258131	3300031713	Soil	MTAVTPETVSEQTAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0306917_114893512	3300031719	Soil	MTAVTPETVSEEAAETRSGTLARRLTSLLVRIRTAAGEDLQTTIARAIEEAFAG
Ga0307469_112705012	3300031720	Hardwood Forest Soil	MTAVTPDAVSEQTLAPRPGTLARRLAAVLVRLRTTAGEDLQSTIARAIDDAFAGIHREMR
Ga0307469_117242462	3300031720	Hardwood Forest Soil	HMTAVTPEAVSEQSVEPRPGTLARRLVSLLVRIRSGAGEGLEATIARSIDEAFAGLHREM
Ga0318554_105332841	3300031765	Soil	SSNMTAVTPETVSEQTAEPRLGTVAHRLASLLVRIRTAAGEDLQTTIARAIDDAFAGIHREMR
Ga0318526_101789482	3300031769	Soil	MTAVTPETVSEQAAETRSGTLARRLTSLLVRIQTAAGEDLQTTIARAIEE
Ga0318566_103486942	3300031779	Soil	MTAVTSATVSEQTTEPRPGTFARLASLLVRIRSAAGEDLQATVARAIDEAFAGIHREMR
Ga0318547_102740072	3300031781	Soil	MTAVTPETVSEQTAEPRLGTVAHRLASLLVRIRTAAGEDLQTTIARAIDDAFAGIHREMR
Ga0318503_102852041	3300031794	Soil	EQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFVGLHREMR
Ga0318497_105089182	3300031805	Soil	HMTAVTPETVSEQTTEPRPGTLARRLTSLLVRIRTAVGEDLQTTIARAIDEAFVGIHREM
Ga0318564_100214164	3300031831	Soil	MTAVTPETVSEQTAEPRPGTVARRLASLLVRIRTAAGGDLQATVARAIDDAFAGIHRE
Ga0310917_104471022	3300031833	Soil	MTAATPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFVGLHREMR
Ga0306925_101247601	3300031890	Soil	DTCMEQHMTAVTPETVSEEAAETRSGTLARRLTSLLVRIRTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0318520_102041252	3300031897	Soil	MTAVTPETVSEQAAETRSGTLARRLTSLLVRIRTAAGEDLQTTIARAIEEAFAGLHREMR
Ga0310884_101300102	3300031944	Soil	MTAVTPETVTEQTTELRADTFARRLASLLVRIRTAAGEDFQTTIARAVDEAFAGIHREMR
Ga0310884_104235992	3300031944	Soil	MTAVTPETVSEPAEPRPAFLARCLASLLVRIRSTAREDLRTTVARAVEEAFAG
Ga0306922_118371371	3300032001	Soil	MTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAF
Ga0318570_105611361	3300032054	Soil	MTAVTPETVSEQTAEPRPGTLARRLASLLVRIRTAAGEDLQATIARAIDDAFAGIHREMR
Ga0318513_100546732	3300032065	Soil	MTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFAGLHREMR
Ga0318514_105586261	3300032066	Soil	CMEQHMTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFVGLHREMR
Ga0318524_104998202	3300032067	Soil	TCMEQHMTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFVGLHREMR
Ga0310890_117879132	3300032075	Soil	MTAVTPETVTEQTTELRADTFARRLASLLVRIRTAAGEDFQVTIARAVDEAFAGIHREMR
Ga0318518_107335872	3300032090	Soil	TAAPRPGTFARRLAALLVAIRSSAGEGLEATIARNIDEAFASLHREMR
Ga0306920_1001447744	3300032261	Soil	MTAVTPETVSEQTAEPRPGTVARRLASLLVRIRTAAGEDLQATVARAIDDAFAGIHREMR
Ga0335085_101075202	3300032770	Soil	MTAVTPETASEQTFEPRPGTLARRLAALLVRLRAAAGEDLQTTIARAIDDAFAGLHREMR
Ga0310914_107907721	3300033289	Soil	MTAVTPETVSEQAAEPRSGTLARRLTSLLVRIRTAAGEDLQATIARAIEEAFV
Ga0373958_0093851_394_588	3300034819	Rhizosphere Soil	MEQHMTAVTPETVTEQTTELRADTFARRLASLLVRIRTAAGEDFQATIARAVDEAFAGIHREMR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091828

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences