NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091644

Metagenome / Metatranscriptome Family F091644

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091644
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 39 residues
Representative Sequence MVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEA
Number of Associated Samples 86
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 4.63 %
% of genes near scaffold ends (potentially truncated) 79.44 %
% of genes from short scaffolds (< 2000 bps) 85.05 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (73.832 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(22.430 % of family members)
Environment Ontology (ENVO) Unclassified
(41.121 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(35.514 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.
1QL_na_1184210
2GOS2236_10756914
3JGI24766J26685_100921953
4metazooDRAFT_12780373
5B570J29032_1098153135
6B570J40625_1001618301
7Ga0049080_100803851
8Ga0049080_101013334
9Ga0049085_101410811
10Ga0079957_12545741
11Ga0070749_100062921
12Ga0070749_100538634
13Ga0070749_102818831
14Ga0070749_103485532
15Ga0070749_105097541
16Ga0070749_105878702
17Ga0075459_10232221
18Ga0102978_11846446
19Ga0075460_102574411
20Ga0070745_11745402
21Ga0070753_12890271
22Ga0075458_101292911
23Ga0099849_12444731
24Ga0099847_11499071
25Ga0099848_12911621
26Ga0099846_13074291
27Ga0070751_13786371
28Ga0114350_10579601
29Ga0114350_11608431
30Ga0114363_12302082
31Ga0114876_11835722
32Ga0114918_102744004
33Ga0129351_12254793
34Ga0136656_12768391
35Ga0129324_103040561
36Ga0129336_103120371
37Ga0129336_103714933
38Ga0129336_105899811
39Ga0136549_101485064
40Ga0133913_1000552435
41Ga0153799_10699333
42Ga0153801_10745271
43Ga0157597_12077452
44Ga0172367_106537862
45Ga0172373_101619731
46Ga0172372_104246193
47Ga0172372_107431041
48Ga0181365_10024301
49Ga0181352_11709911
50Ga0181344_10828611
51Ga0181356_10350605
52Ga0181343_10978811
53Ga0181358_10809084
54Ga0169931_107792811
55Ga0180434_108796281
56Ga0180433_104952791
57Ga0180433_105964013
58Ga0180433_108525711
59Ga0180433_109987801
60Ga0181361_1053884
61Ga0194116_100037151
62Ga0208360_10388251
63Ga0194130_102941133
64Ga0214923_100829803
65Ga0214923_105772382
66Ga0210003_13588042
67Ga0209986_103463261
68Ga0255187_10313262
69Ga0255266_11316651
70Ga0256344_10938522
71Ga0208147_10007619
72Ga0208644_10098314
73Ga0208644_12437261
74Ga0208644_13663412
75Ga0208916_101733633
76Ga0255166_10078532
77Ga0209553_12685782
78Ga0209635_111473431
79Ga0209536_1013640671
80Ga0247723_11369321
81Ga0307379_111929721
82Ga0307379_114181951
83Ga0307377_108127593
84Ga0307377_108985743
85Ga0315907_104606934
86Ga0315909_103440711
87Ga0315904_102952335
88Ga0315289_114638112
89Ga0315284_123156012
90Ga0334981_0489830_8_121
91Ga0334982_0084816_1572_1691
92Ga0334994_0060443_1_111
93Ga0310131_095005_308_430
94Ga0334987_0108257_940_1071
95Ga0334995_0201911_1257_1379
96Ga0335000_0209075_107_229
97Ga0335000_0376605_734_850
98Ga0335000_0564936_53_184
99Ga0310130_0013724_2484_2597
100Ga0335036_0846030_67_180
101Ga0335051_0237410_784_900
102Ga0335066_0077562_74_196
103Ga0335016_0640155_453_572
104Ga0335065_0569613_1_117
105Ga0335049_0098333_1_117
106Ga0335048_0539889_163_294
107Ga0335048_0613994_344_454
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
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Variant

5101520253035MVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
26.2%73.8%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater
Lake
Freshwater
Freshwater Lake
Freshwater Lentic
Freshwater And Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Lake
Sediment
Freshwater
Freshwater
Marine Sediment
Deep Subsurface
Aqueous
Freshwater To Marine Saline Gradient
Marine
Saline Water
Hypersaline Lake Sediment
Marine Methane Seep Sediment
Soil
Fracking Water
Deep Subsurface Sediment
7.5%2.8%22.4%2.8%3.7%2.8%3.7%2.8%19.6%5.6%4.7%3.7%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
QL_na_11842102022920000Saline WaterMVEEVQGDQTRISLSFNTFPIGSIGEEVDLTGLKI
GOS2236_107569143300001968MarinePSHLTHMVETLKGDDVRVSMSFNTFPTGHIGDDDNLTGLEL*
JGI24766J26685_1009219533300002161Freshwater And SedimentTHMVETVQGDERVSLAFNTFPVGYVGEEESLTALHLRN*
metazooDRAFT_127803733300002200LakeVEAKQGENIRTSLAFNTFPVGQVGENLDMTGLDL*
B570J29032_10981531353300002408FreshwaterHMVPNVQGETTRISLSFNTFPVGTVGEEMDLTGLKLEA*
B570J40625_10016183013300002835FreshwaterTHMVQTVQGEDTRISLSFNTFPVGYVGDEKSLTGLHLRD*
Ga0049080_1008038513300005582Freshwater LenticVPTLQGEDQRVSMSFNTFPVGYVGSDDDLTGLRL*
Ga0049080_1010133343300005582Freshwater LenticMLFPSSLTHMVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE*
Ga0049085_1014108113300005583Freshwater LenticLTHMVETIQGPETRISLSFNSFPTGYLGDEDDLTRLDIE*
Ga0079957_125457413300005805LakeLMLFPSSLTHMVETVQGDERVSLAFNTFPVGYVGEEESLTALHI*
Ga0070749_1000629213300006802AqueousMVETVQGDERVSLSYNTFPVGYVGEEESLTALHLEN*
Ga0070749_1005386343300006802AqueousHMVETVQGNDTRISLSFNTFPVGNFGQDESLTGLHL*
Ga0070749_1028188313300006802AqueousMVETVQGESTRISLSFNTFPVGNIGEEVDLTGLKLETAKG*
Ga0070749_1034855323300006802AqueousMVEGVKGDHTRISLSFNTFPVGLVGEEVDLTALRLEDVER*
Ga0070749_1050975413300006802AqueousSLTHMVEAVQQERVSLSFNTFPVGYVGEEESLTALHLENPQGAA*
Ga0070749_1058787023300006802AqueousMFPVEGENTRISMSFNTFPVGSVGDEMELTGLKLEA*
Ga0075459_102322213300006863AqueousMVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEA*
Ga0102978_118464463300007177Freshwater LakeVPEVKGDDVRISLSFNTFPVGVVGEEMDLTGLKLEA*
Ga0075460_1025744113300007234AqueousPSSLTHMVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE*
Ga0070745_117454023300007344AqueousMVPEVKGDDTRISLSFNTFPVGVVGEEMDLTGLRLEA*
Ga0070753_128902713300007346AqueousETVQGDERISLSFNTFPVGLAGSEESLTALHLRD*
Ga0075458_1012929113300007363AqueousMLFPSSLTHMVETVQGDERVSLAFNTFPVGYVGDEENLTALHLRN*
Ga0099849_124447313300007539AqueousVETVQGDQTRISLSFNTFPIGLVGDEMNLTGLQLESVKG*
Ga0099847_114990713300007540AqueousQGDQTRISLSFNTFPIGLVGDEMNLTGLQLESVKG*
Ga0099848_129116213300007541AqueousTHMVETVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLEAAKG*
Ga0099846_130742913300007542AqueousMVETVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE*
Ga0070751_137863713300007640AqueousETVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE*
Ga0114350_105796013300008116Freshwater, PlanktonTVKGDDVRISMSFNTFPVGVVGDELSLTGLKLEA*
Ga0114350_116084313300008116Freshwater, PlanktonEVKGDDTRISLSFNTFPVGVVGEEMDLTGLKLEA*
Ga0114363_123020823300008266Freshwater, PlanktonVQQERVSLSFNTFPVGYVGEEESLTALHLENPQGAA*
Ga0114876_118357223300008448Freshwater LakeMVPNVQGETTRISLSFNTFPVGTVGEEMDLTGLKLEA*
Ga0114918_1027440043300009149Deep SubsurfaceGDQTRISLSFNTFPIGLVGDEMNLTGLQLESVKG*
Ga0129351_122547933300010300Freshwater To Marine Saline GradientQGDQTRISLSFNTFPVGVVGEEMDLTGLKLEAVKG*
Ga0136656_127683913300010318Freshwater To Marine Saline GradientLTHMVETVKEEDRISLSFNTFPVGYVGEEESLTALHLEN*
Ga0129324_1030405613300010368Freshwater To Marine Saline GradientTRISLSFNTFPIGLVGDEMNLTGLQIGELDGALR*
Ga0129336_1031203713300010370Freshwater To Marine Saline GradientTVEGEDVRVSLSFNTFPAGTVGEEMDLTGLKLEV*
Ga0129336_1037149333300010370Freshwater To Marine Saline GradientTHMVPTVESEQTRISLSFNTFPVGNVGEEMDLTGLQLGELDGAFR*
Ga0129336_1058998113300010370Freshwater To Marine Saline GradientNVPPVEGENTRISMSFNTFPVGSVGDEMELTGLKLEA*
Ga0136549_1014850643300010389Marine Methane Seep SedimentGEATRISLSFNTFPVGVVGEEMDLTGLKLETVKG*
Ga0133913_10005524353300010885Freshwater LakeSSFTHMVEAVKGEDLRVSMSFNTFPVGYVGDDDSLTGLHL*
Ga0153799_106993333300012012FreshwaterHMVPTVEGEDVRVSLSFNTFPAGTVGEEMDLTGLKLEV*
Ga0153801_107452713300012017FreshwaterLTHMVPTVESEQTRISLSFNTFPVGNVGEEVDLTGLQLGELDGAFR*
Ga0157597_120774523300012726FreshwaterLEHNVPTVQGDDVRISMSFNTFPVGVVGDELSLTGLKLEA*
(restricted) Ga0172367_1065378623300013126FreshwaterLEHMVETVNAENTRISLSFNTFPVGIVGEEKDLTLLELT*
(restricted) Ga0172373_1016197313300013131FreshwaterTHMVESVQQERVSLSFNTFPVGYVGEEESLTALHLEN*
(restricted) Ga0172372_1042461933300013132FreshwaterMVPTVEGEDVRVSLSFNTFPAGTVGEEMDLTGLKLEV*
(restricted) Ga0172372_1074310413300013132FreshwaterTHMVQTVESEKTRISLAFNTFPVGHVGDEMNLTGLSLGELDGAFL*
Ga0181365_100243013300017736Freshwater LakeHMVEAVKGEDLRVSMSFNTFPVGYVGDDDSLTGLHL
Ga0181352_117099113300017747Freshwater LakeTHMVETVQGDERVSLAFNTFPVGYVGEEESLTALHLRN
Ga0181344_108286113300017754Freshwater LakeTHMVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE
Ga0181356_103506053300017761Freshwater LakePSSFTHMVEAVKGEDLRVSMSFNTFPVGYVGDDDSLTGLHL
Ga0181343_109788113300017766Freshwater LakeMVETVKGEDTRISLSFNTFPVGNIGEEVDLTGLKLESIKE
Ga0181358_108090843300017774Freshwater LakeFTHMVEAVKGEDLRVSMSFNTFPVGYVGDDDSLTGLHL
Ga0169931_1077928113300017788FreshwaterPSHLTHMVESVQQERVSLSFNTFPVGYVGEEESLTALHLEN
Ga0180434_1087962813300017991Hypersaline Lake SedimentTHMVETVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE
Ga0180433_1049527913300018080Hypersaline Lake SedimentHMVETVKGDQQRISLSFNTFPVGSVGDEMNLTGLQIGELDGALR
Ga0180433_1059640133300018080Hypersaline Lake SedimentTHMVETVQGNNTRISLSFNTFPVGNFGDDLSLTGLHL
Ga0180433_1085257113300018080Hypersaline Lake SedimentMVETVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE
Ga0180433_1099878013300018080Hypersaline Lake SedimentVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLEAVKG
Ga0181361_10538843300019783Freshwater LakeFPSSFTHMVEAVKGEDLRVSMSFNTFPVGYVGDDDSLTGLHL
Ga0194116_1000371513300020204Freshwater LakeQTLDHDQTRISLAFNTFPIGHIGEEVDLTGLNLGELDGAFR
Ga0208360_103882513300020551FreshwaterSSLEHNVPTVQGEDVRISMSFNTFPVGIVGDEMQLTGLKLEA
Ga0194130_1029411333300021376Freshwater LakeVQGDQTRISLSFNTFPVGSVGDEMNLTGLQLESVKG
Ga0214923_1008298033300023179FreshwaterMVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLRLEA
Ga0214923_1057723823300023179FreshwaterPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLRLEA
Ga0210003_135880423300024262Deep SubsurfaceETVKGEDTRISLSFNTFPVGLVGEEMDLTGLKLESIKE
Ga0209986_1034632613300024433Deep SubsurfaceVQGEATRISLSFNTFPVGVVGEEMDLTGLKLEAVKG
Ga0255187_103132623300024510FreshwaterMLFPSSLTHMVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE
Ga0255266_113166513300024550FreshwaterVPEIKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEI
Ga0256344_109385223300024860FreshwaterMVPTIEGDDTRISLSFNTFPVGVVGEEMDLTGLKLEA
Ga0208147_100076193300025635AqueousMVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEA
Ga0208644_100983143300025889AqueousMVETVKEEDRISLSFNTFPVGYVGEEESLTALHLEQ
Ga0208644_124372613300025889AqueousVPEVKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEA
Ga0208644_136634123300025889AqueousVQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE
Ga0208916_1017336333300025896AqueousPTVQGEQTRISLSFNTFPVGTVGEEMDLTGLKLEA
Ga0255166_100785323300026473FreshwaterMVQTVESDQTRISLAFNTFPVGNIGEELDLTGLQLGELDGAFR
Ga0209553_126857823300027688Freshwater LakeSLTHMVPTLQGEDQRVSMSFNTFPVGYVGSDDDLTGLRL
Ga0209635_1114734313300027888Marine SedimentLTHMVETVQGDQQRISLSFNTFPVGLVGDEMNLTGLQIGELDGALR
Ga0209536_10136406713300027917Marine SedimentQGDQTRISLSFNTFPVGVVGEEMDLTGLKLESVKE
Ga0247723_113693213300028025Deep Subsurface SedimentSLEHNVPTVQGNDVRISMSFNTFPVGIVGDEMSLTGLKLEV
Ga0307379_1119297213300031565SoilHMVETVKGEDTRVSLSFNTFPVGLVGEEMDLTGLKLESIKE
Ga0307379_1141819513300031565SoilMVETVQGDQTRISLSFNTFPIGLVGDEMNLTGLQIGELDGALR
Ga0307377_1081275933300031673SoilHMVETVKGEDTRISLSFNTFPVGLVGEEMDLTGLKLESIKE
Ga0307377_1089857433300031673SoilVQGEATRISLSFNTFPVGVVGEEMDLTGLKLETVKG
Ga0315907_1046069343300031758FreshwaterVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE
Ga0315909_1034407113300031857FreshwaterSLTHMVETVQGEDRVSLAFNTFPVGYVGEEESLTALHLKE
Ga0315904_1029523353300031951FreshwaterMVETVQGDDRVSLAFNTFPAGYVGDESSLTALHLKE
Ga0315289_1146381123300032046SedimentTHMVPTLQGDDQRVSMSFNTFPVGYVGSDDDLTGLRL
Ga0315284_1231560123300032053SedimentLTHMVPTLQGDDQRVSMSFNTFPVGYVGSDDDLTGLRL
Ga0334981_0489830_8_1213300033980FreshwaterMVPEVKGDDVRISLSFNTFPVGVVGEEMDLTGLKLEA
Ga0334982_0084816_1572_16913300033981FreshwaterTHMVQTVQGEDTRISLSFNTFPVGYVGDEKSLTGLHLRD
Ga0334994_0060443_1_1113300033993FreshwaterVQTVQGEDTRISLSFNTFPVGYVGDEKSLTGLHLRD
Ga0310131_095005_308_4303300033997Fracking WaterMVQTLDHHETRISLAFNTFPVGVVGEEMDLTSLKLETAQG
Ga0334987_0108257_940_10713300034061FreshwaterMVPTVESEQTRISLSFNTFPVGNVGEEMDLTGLQLGELDGAFR
Ga0334995_0201911_1257_13793300034062FreshwaterREHNVPTVQGEDVRISMSFNTFPVGIVGDEMQLTGLKLEA
Ga0335000_0209075_107_2293300034063FreshwaterMVETVKGEDTRISLSFNTFPVGLVGEEMDLTGLKLESIKE
Ga0335000_0376605_734_8503300034063FreshwaterTHMVETVQGDDRVSLAFNTFPVGYVGEEEQLTALHLEN
Ga0335000_0564936_53_1843300034063FreshwaterMVPTVESEQTRISLSFNTFPVGNIGEEVDLTGLQLGELDGAFR
Ga0310130_0013724_2484_25973300034073Fracking WaterMVPEIKGEDTRISLSFNTFPVGVVGEEMDLTGLKLEI
Ga0335036_0846030_67_1803300034106FreshwaterMVPTIQGEKTRISMSFNTFPVGTVGEEMELTGLKLEA
Ga0335051_0237410_784_9003300034109FreshwaterHNVPTAQGDDVRISMSFNTFPVGVVGDELSLTGLKLEA
Ga0335066_0077562_74_1963300034112FreshwaterMVETVKGEDTRISLSFNTFPVGNIGEEVDLTGLKLESAQG
Ga0335016_0640155_453_5723300034166FreshwaterEHNVPTVQGEDVRISMSFNTFPVGIVGDEMSLTGLKLEA
Ga0335065_0569613_1_1173300034200FreshwaterHMVPTIQGEQTRISLSFNTFPVGTVGEEMDLTGLKLEA
Ga0335049_0098333_1_1173300034272FreshwaterHNVPTVTGDDVRISMSFNTFPVGVVGDEMQLTGLKLEA
Ga0335048_0539889_163_2943300034356FreshwaterMVQTVESDQTRISLSFNTFPVGNVGEEMDLTGLQLGELDGAFR
Ga0335048_0613994_344_4543300034356FreshwaterMVEQVKGEDTRISLSFNTFPKGIIGDEIALTTLKLG


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