Metagenome / Metatranscriptome Family F091544

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091544
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	MSGCVLILVWIGCVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQENRNP
Number of Associated Samples	67
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	85.29 %
% of genes near scaffold ends (potentially truncated)	25.23 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.271 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.495 % of family members)
Environment Ontology (ENVO)	Unclassified (28.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.729 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.37% β-sheet: 0.00% Coil/Unstructured: 37.63%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF06897	DUF1269	17.76
PF09851	SHOCT	12.15
PF05239	PRC	2.80
PF03640	Lipoprotein_15	2.80
PF01740	STAS	1.87
PF13378	MR_MLE_C	1.87
PF05433	Rick_17kDa_Anti	0.93
PF05853	BKACE	0.93
PF13419	HAD_2	0.93
PF01663	Phosphodiest	0.93
PF01266	DAO	0.93
PF13886	DUF4203	0.93
PF01625	PMSR	0.93
PF04525	LOR	0.93
PF11990	DUF3487	0.93
PF06271	RDD	0.93
PF12811	BaxI_1	0.93
PF12631	MnmE_helical	0.93
PF13586	DDE_Tnp_1_2	0.93
PF01243	Putative_PNPOx	0.93
PF00892	EamA	0.93
PF13903	Claudin_2	0.93
PF14110	DUF4282	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG4803	Uncharacterized membrane protein	Function unknown [S]	17.76
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	2.80
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1714	Uncharacterized membrane protein YckC, RDD family	Function unknown [S]	0.93
COG3246	Uncharacterized conserved protein, DUF849 family	Function unknown [S]	0.93
COG4894	Putative phospholipid scramblase YxjI, Tubby2 superfamily	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
All Organisms	root	All Organisms	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
cellular organisms	root	All Organisms → cellular organisms	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	23.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Synergistetes	phylum	All Organisms → cellular organisms → Bacteria → Synergistetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	11.21 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8.41 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Synergistia	class	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia	0.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	7.48 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	3.74 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	1.87 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Synergistales	order	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.74 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.87 %
unclassified Chloroflexia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia	1.87 %
Synergistaceae	family	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae	0.93 %
Brucellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae	0.93 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.74 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Brucella/Ochrobactrum group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group	0.93 %
Thermovirga	genus	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Thermovirga	0.93 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.93 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.74 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Brucella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella	0.93 %
Mycolicibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter	0.93 %
Thermovirga lienii	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Thermovirga → Thermovirga lienii	0.93 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.74 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
unclassified Brucella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → unclassified Brucella	0.93 %
Mycolicibacter sinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter sinensis	0.93 %
Thermovirga lienii	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Thermovirga → Thermovirga lienii	0.93 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3.74 %
Chloroflexia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	1.87 %
Brucella sp. 63/311	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → unclassified Brucella → Brucella sp. 63/311	0.93 %
Mycolicibacter sinensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter sinensis	0.93 %
Thermovirga lienii	species	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Thermovirga → Thermovirga lienii	0.93 %
Acidobacteria bacterium 13_1_20CM_3_53_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459021\|G14TP7Y01D00FA	Not Available	582	Open in IMG/M
3300000956\|JGI10216J12902_104160020	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300000956\|JGI10216J12902_105446519	All Organisms → cellular organisms → Bacteria	1143	Open in IMG/M
3300000956\|JGI10216J12902_108956118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1580	Open in IMG/M
3300000956\|JGI10216J12902_109723014	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300000956\|JGI10216J12902_110669063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacter → Mycolicibacter sinensis	514	Open in IMG/M
3300003267\|soilL1_10186114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2350	Open in IMG/M
3300003321\|soilH1_10327560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	4818	Open in IMG/M
3300003993\|Ga0055468_10014203	All Organisms → cellular organisms → Bacteria	1621	Open in IMG/M
3300004081\|Ga0063454_100318945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	985	Open in IMG/M
3300004114\|Ga0062593_100072120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2290	Open in IMG/M
3300004114\|Ga0062593_102369371	All Organisms → cellular organisms → Bacteria → Synergistetes → Synergistia → Synergistales → Synergistaceae → Thermovirga → Thermovirga lienii	598	Open in IMG/M
3300004463\|Ga0063356_101585259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	974	Open in IMG/M
3300004463\|Ga0063356_102042491	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300004463\|Ga0063356_102155243	Not Available	847	Open in IMG/M
3300004798\|Ga0058859_10350394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	506	Open in IMG/M
3300004799\|Ga0058863_11783903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1277	Open in IMG/M
3300004800\|Ga0058861_11677544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1039	Open in IMG/M
3300005366\|Ga0070659_102070993	Not Available	511	Open in IMG/M
3300005436\|Ga0070713_100477932	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1173	Open in IMG/M
3300005530\|Ga0070679_101105657	Not Available	737	Open in IMG/M
3300005547\|Ga0070693_100607784	Not Available	790	Open in IMG/M
3300005655\|Ga0073905_10371583	Not Available	607	Open in IMG/M
3300005655\|Ga0073905_10461080	Not Available	533	Open in IMG/M
3300005764\|Ga0066903_103020049	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300005840\|Ga0068870_11346299	Not Available	521	Open in IMG/M
3300006092\|Ga0082021_1118540	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300006844\|Ga0075428_102214971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Brucellaceae → Brucella/Ochrobactrum group → Brucella → unclassified Brucella → Brucella sp. 63/311	567	Open in IMG/M
3300007004\|Ga0079218_11983055	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300009789\|Ga0126307_10261657	Not Available	1391	Open in IMG/M
3300009789\|Ga0126307_10505095	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300009840\|Ga0126313_11738514	Not Available	521	Open in IMG/M
3300009840\|Ga0126313_11875516	Not Available	502	Open in IMG/M
3300010037\|Ga0126304_10411885	Not Available	903	Open in IMG/M
3300010037\|Ga0126304_10451814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	861	Open in IMG/M
3300010037\|Ga0126304_10870413	Not Available	612	Open in IMG/M
3300010038\|Ga0126315_10142498	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300010038\|Ga0126315_10351618	Not Available	918	Open in IMG/M
3300010041\|Ga0126312_10554824	Not Available	824	Open in IMG/M
3300010042\|Ga0126314_10023888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3747	Open in IMG/M
3300010045\|Ga0126311_10133479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_3_53_8	1749	Open in IMG/M
3300010051\|Ga0133939_1010943	All Organisms → cellular organisms → Bacteria	10954	Open in IMG/M
3300010137\|Ga0126323_1108469	Not Available	644	Open in IMG/M
3300010146\|Ga0126320_1269054	Not Available	871	Open in IMG/M
3300010146\|Ga0126320_1315923	Not Available	507	Open in IMG/M
3300010146\|Ga0126320_1433439	Not Available	623	Open in IMG/M
3300010154\|Ga0127503_10015893	All Organisms → cellular organisms → Bacteria	2389	Open in IMG/M
3300010166\|Ga0126306_11201620	Not Available	623	Open in IMG/M
3300010366\|Ga0126379_11113611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	895	Open in IMG/M
3300010397\|Ga0134124_11350533	Not Available	737	Open in IMG/M
3300011119\|Ga0105246_11197810	Not Available	699	Open in IMG/M
3300011332\|Ga0126317_10197851	Not Available	507	Open in IMG/M
3300012212\|Ga0150985_101870812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1169	Open in IMG/M
3300012212\|Ga0150985_103096532	Not Available	569	Open in IMG/M
3300012212\|Ga0150985_105143399	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5761	Open in IMG/M
3300012212\|Ga0150985_112804989	Not Available	832	Open in IMG/M
3300012212\|Ga0150985_113689677	Not Available	662	Open in IMG/M
3300012212\|Ga0150985_114980616	Not Available	796	Open in IMG/M
3300012212\|Ga0150985_122028552	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300012212\|Ga0150985_122905833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2013	Open in IMG/M
3300012469\|Ga0150984_100028781	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300012469\|Ga0150984_102796431	Not Available	743	Open in IMG/M
3300012469\|Ga0150984_111798859	Not Available	713	Open in IMG/M
3300012469\|Ga0150984_112179539	All Organisms → cellular organisms → Bacteria	1217	Open in IMG/M
3300012469\|Ga0150984_113076748	Not Available	700	Open in IMG/M
3300012469\|Ga0150984_119518751	Not Available	881	Open in IMG/M
3300012943\|Ga0164241_10586487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	806	Open in IMG/M
3300012943\|Ga0164241_10850145	Not Available	666	Open in IMG/M
3300012955\|Ga0164298_10545038	Not Available	785	Open in IMG/M
3300012960\|Ga0164301_10328511	Not Available	1042	Open in IMG/M
3300012988\|Ga0164306_10057281	All Organisms → cellular organisms → Bacteria	2384	Open in IMG/M
3300015077\|Ga0173483_10747447	Not Available	558	Open in IMG/M
3300015200\|Ga0173480_11195998	Not Available	513	Open in IMG/M
3300018432\|Ga0190275_10009798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	7063	Open in IMG/M
3300018432\|Ga0190275_10046913	All Organisms → cellular organisms → Bacteria	3585	Open in IMG/M
3300018432\|Ga0190275_10051188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3448	Open in IMG/M
3300018432\|Ga0190275_10284580	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300018432\|Ga0190275_10385915	Not Available	1406	Open in IMG/M
3300018481\|Ga0190271_11424891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	811	Open in IMG/M
3300018481\|Ga0190271_12471315	All Organisms → cellular organisms → Bacteria → Terrabacteria group	622	Open in IMG/M
3300019361\|Ga0173482_10798950	Not Available	500	Open in IMG/M
3300020080\|Ga0206350_11655954	Not Available	560	Open in IMG/M
3300020186\|Ga0163153_10466587	Not Available	518	Open in IMG/M
3300022906\|Ga0247766_1082742	All Organisms → cellular organisms → Bacteria → Terrabacteria group	824	Open in IMG/M
3300025912\|Ga0207707_11417118	Not Available	554	Open in IMG/M
3300025961\|Ga0207712_12076106	Not Available	508	Open in IMG/M
3300027886\|Ga0209486_10544446	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300028592\|Ga0247822_10799970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → unclassified Chloroflexia → Chloroflexia bacterium	768	Open in IMG/M
3300028592\|Ga0247822_10966950	Not Available	702	Open in IMG/M
3300028597\|Ga0247820_11405521	Not Available	509	Open in IMG/M
3300028768\|Ga0307280_10117266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	898	Open in IMG/M
3300030905\|Ga0308200_1004710	All Organisms → cellular organisms → Bacteria	1748	Open in IMG/M
3300030905\|Ga0308200_1068472	Not Available	700	Open in IMG/M
3300030988\|Ga0308183_1010326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1415	Open in IMG/M
3300030988\|Ga0308183_1024796	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300030988\|Ga0308183_1048926	Not Available	842	Open in IMG/M
3300030988\|Ga0308183_1193547	Not Available	525	Open in IMG/M
3300031058\|Ga0308189_10102909	Not Available	909	Open in IMG/M
3300034662\|Ga0314783_033293	Not Available	901	Open in IMG/M
3300034672\|Ga0314797_151611	Not Available	514	Open in IMG/M
3300034673\|Ga0314798_172389	Not Available	506	Open in IMG/M
3300034676\|Ga0314801_094020	Not Available	663	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.96%
Host-Associated	Host-Associated	23.36%
Engineered	Engineered	4.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.49%
Plants	Host-Associated → Plants	20.56%
Aquatic	Environmental → Aquatic	7.48%
Wastewater	Engineered → Wastewater	3.74%
Human	Host-Associated → Human	2.80%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.55%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.21%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.35%
Freshwater	Environmental → Aquatic → Freshwater	6.54%
Digestive System	Host-Associated → Human → Digestive System	2.80%
Activated Sludge	Engineered → Wastewater → Activated Sludge	2.80%
Marine	Environmental → Aquatic → Marine	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.93%
Grass	Engineered → Solid Waste → Grass	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.21%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.54%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	2.80%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	36.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.48%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.54%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.61%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.50%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.15%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.54%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	5.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.67%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	2.80%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.87%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	1.87%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%
Wastewater Treatment Plant	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater Treatment Plant	0.93%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Industrial Wastewater	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459021	Litter degradation NP4	Engineered	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004799	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005655	Active sludge microbial communities from Klosterneuburg, Austria, studying microevolution and ecology of nitrifiers - Klosterneuburg WWTP active sludge metagenome KNB14_supernatant	Engineered	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006092	Activated sludge microbial communities from wastewater treatment plant in Ulu Pandan, Singapore	Engineered	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010051	Industrial wastewater microbial communities from reactors of effluent treatment plant in South Killingholme, Immingham, England. Combined Assembly of Gp0151195, Gp0151196	Engineered	Open in IMG/M
3300010137	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300022906	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L223-509R-6	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034662	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034673	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034676	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4NP_03528510	2170459021	Switchgrass, Maize And Mischanthus Litter	MSNAGLIVAWVVCVVVGAIVGFLAGYVLWKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD
JGI10216J12902_1041600201	3300000956	Soil	MNGLTLTLVWIGCVIVGAAAGFLAGYLLWKLGLELIGSAVLMVGAGVGGIVAFFGFLNW
JGI10216J12902_1054465193	3300000956	Soil	MDEMSGWMLVLVWIACVVLGAVAGFAAGYVLWKLGFELIGSAVALVGAGVGGIAAFLWFLQWSEDRRA*
JGI10216J12902_1089561183	3300000956	Soil	MSGAVLVLVWIGCVIVGAVVGFLAGWILWKIGLEVIGSAVALVGAGAGGIVAFFAFLSWSEDRWR*
JGI10216J12902_1097230142	3300000956	Soil	MSNAGLVVAWVVCVVVGAIVGFLAGYVLWKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD*
JGI10216J12902_1106690631	3300000956	Soil	MNALTLTLVWIGCVILGAVAGFLAGYLLWKLGFELIGSAVALVGAGAGGIVAFLWFLNWQDNRQP*
C688J35102_1209071201	3300002568	Soil	MGTVGYILLWIACVVAGAVAGFIVGYIVWKLGFELIGSALALVGAGVGGILAFFAALNFLEDREDRKERDRAKS*
soilL1_101861143	3300003267	Sugarcane Root And Bulk Soil	MSGCVLILVWIGCVLLGAAAGYAVGYLLWKLGFELIGSAVALVGAGAGGILVFFGFLNWQEKRNPDM*
soilH1_103275604	3300003321	Sugarcane Root And Bulk Soil	MSGCVLILVWIGCVLLGAAAGYAVGYLLWKLGFELIGSAVALVVSGAGGILVFFGFLNWQEKRNPDM*
Ga0055468_100142032	3300003993	Natural And Restored Wetlands	MSGGMLVLVWIGCVILGAIAGFAAGYLLWKLGFELIGSAVAIVGAGAGGIVAFLWFLNWQDNRQP*
Ga0063454_1003189451	3300004081	Soil	LSGFVLFLVWVGCVILGAVVGFFLGWILWKLGFEVIGSAVALVGAGAGGIVAFFAFLNWSEDRWR*
Ga0062593_1000721202	3300004114	Soil	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQENRNP*
Ga0062593_1023693711	3300004114	Soil	MEMSGWKLILAWIACVLLGGAVGFAIGWVVWKLGFELIGSAIALAGAGVGGIVMFFAFMNWSDNRQSREP*
Ga0063356_1015852592	3300004463	Arabidopsis Thaliana Rhizosphere	MSGWKLILVWIACVIVGAIIGFGIGWLLWKAGLELIGSAVALVGAAVGGFVVFFAFMRWQEDRKYR*
Ga0063356_1020424913	3300004463	Arabidopsis Thaliana Rhizosphere	METMSKWTLILVWIGCVIVGAAAGFGAGYVLWQIGFELIGSAVALVGAGVGGIAAFFWFLDWSEDRRG*
Ga0063356_1021552432	3300004463	Arabidopsis Thaliana Rhizosphere	MSGCVLILVWIGCVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQERRNP*
Ga0058859_103503942	3300004798	Host-Associated	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSGIALVGAGAGGILVFFGFLNWQ
Ga0058863_117839032	3300004799	Host-Associated	MSGCVLILVWIGCVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQENRNP*
Ga0058861_116775443	3300004800	Host-Associated	SMSGCVLILVWIGCVLLGAAAGYAVGYLLWKLGFELIGSAVALVGAGAGGILVFFGFLNWQEKRNPDM*
Ga0070659_1020709931	3300005366	Corn Rhizosphere	AGLIVAWVVCVVLGAIVGFLAGYVLWKLGLELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD*
Ga0070713_1003043852	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MGTAGLVLLWIGCVIVGAVVGFFVGYIVWKLGFELIGSAIALVGAGVGGILAFMAALNWLDRPKRAS*
Ga0070713_1004779321	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MVLLWIGCVLLGAIVGFIAGYIVWKLGFELIGSALALVGAGVGGILAFMAALNWLDR
Ga0070679_1011056572	3300005530	Corn Rhizosphere	ILVWIGCVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQENRNP*
Ga0070693_1006077841	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQEKRNPDM*
Ga0073905_103715832	3300005655	Activated Sludge	MEMSGWKLILVWIACVVIGAAVGFGIGWVIWKLGFELIGSAVALAGAGLGGIVTFFWFMNWSEDRR*
Ga0073905_104610801	3300005655	Activated Sludge	MQGWKLILAWIAFVLLGAAAGFAIGWVVWQLGFELIGSAIAMVGAGVGGIVLFFWFMNWSEDRRA*
Ga0066903_1030200491	3300005764	Tropical Forest Soil	MESMSGWTLIVAWIVCVIVGAAVGFLAGYILWKIGLELIGSAVALVGAGVGGIIAFLWFLQWSDDRRG*
Ga0068870_113462992	3300005840	Miscanthus Rhizosphere	TEETMSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQENRNP*
Ga0082021_11185403	3300006092	Wastewater Treatment Plant	MEGWKLIVAWIVAVLLGAAAGFAIGWIVWKLGFELIGSAIAMVGAGVGGIVLFFWFMNWSEDRRR*
Ga0075428_1022149711	3300006844	Populus Rhizosphere	MGTFGMVLLWIGCVIVGAAAGFLAGWVLWKLGFELIGSAVALVGAGAGGIVVFFALLAWYDRRGPRPAQ*
Ga0079218_119830551	3300007004	Agricultural Soil	MGTFGMVLLWIGCVIVGAVAGFLAGYVLWKLGFELIGSAVALVGAGAGGILVFFALLAWYDRRGPRPA*
Ga0126307_102616573	3300009789	Serpentine Soil	METMSKWTLILAWIACVVLGAVVGFGVGWVLWQIGFELIGSAVSMVGAGVGGIAAFLWFLQWSEDRGR*
Ga0126307_105050952	3300009789	Serpentine Soil	MESMGTWRLILIWIACVIAGAVAGFAAGYILWQLGFELIGSAVAIVGAGVGGIAAFLWFLQWSEDRRG*
Ga0126313_117385142	3300009840	Serpentine Soil	MEALMSGFKLIMVWIGCVILGAAAGFLAGYVFWKLGFELIGSAVAIVGAGAGGIVAFLWFLNWQDSRQP*
Ga0126313_118755161	3300009840	Serpentine Soil	VNYLVITLVWIGCVIVGAAIGFLAGYVLWKLGFELIGGTVAVVGACIGGFIVLFGLASWSNNRRT*
Ga0126304_104118851	3300010037	Serpentine Soil	MEGWKLILAWIACVLLGAAAGFAIGWVVWRLGFELIGSAIALVGAGVGGIALFFWFMSWSEDRRA*
Ga0126304_104518142	3300010037	Serpentine Soil	MEDSQMSNAGLVVAWVVCVVVGAIVGFLAGYVLWKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD*
Ga0126304_108704132	3300010037	Serpentine Soil	METMSKWTLILVWIGCVIVGAAAGFGAGYVLWMIGFELIGSAVAMVGAGVGGIVAFFWFLDWSEDRRG*
Ga0126315_101424982	3300010038	Serpentine Soil	METMSKWTLILVWIACVILGAAAGFAAGYVLWKIGLELIGSAVALVGAGVGGIVAFLWFLQWSEDRRG*
Ga0126315_103516181	3300010038	Serpentine Soil	VNYLVITLVWIGCVIVGAAIGFLAGYVLWKLGFELIGGTVAVVGAYIGGFIVLFGLASWSNNRRT*
Ga0126312_105548242	3300010041	Serpentine Soil	MSGFKLIMVWIGCVILGAAAGFLAGYVFWKLGFELIGSAVAIVGAGAGGIVAFLWFLNWQ
Ga0126314_100238881	3300010042	Serpentine Soil	KWTLILVWIACVILGAAAGFAAGYVLWKIGLELIGSAVALVGAGVGGIVAFLWFLQWSEDRRG*
Ga0126311_101334791	3300010045	Serpentine Soil	METMGKWTLILVWIACVILGAAAGFAAGYVLWKIGLELIGSAVALVGAGVGGIVAFLWFLQWSEDRRG*
Ga0133939_10109434	3300010051	Industrial Wastewater	MEGWKLIVAWIVAVLLGAAAGFAIGWIIWKLGFELIGSAIAMVGAGVGGIVLFFWFMNWSEDRRR*
Ga0126323_11084692	3300010137	Soil	METMGKWTLILVWIGCVLVGAAVGFGIGYILWRIGFELIGGSVALVGAGVGGIVVFFWFLQWSEDRQ*
Ga0126320_12690541	3300010146	Soil	LVWIGCVLVGAAVGFGIGYILWRFGFELIGGSVALVGAGVGGIVVFFWFLQWSEDRQ*
Ga0126320_13159231	3300010146	Soil	MMESGWTLVLVWIGCVIVGAIAGFGAGYLLWKLGFELIGSAVALVGAGLGGILAFFGFLSWSDNRESGS*
Ga0126320_14334392	3300010146	Soil	METMSNWKLICVWIACVILGGIAGFSAGYILWKLGFELIGSAVALVGAGVGGIVAFFWFLQWSEDRRG*
Ga0127503_100158933	3300010154	Soil	MDEMSGWTLVIAWIVCVILGAVVGFLAGYILWKIGFELIGSAVALVGAGAGGIVAFLWFLQWSDDRRS*
Ga0126306_112016201	3300010166	Serpentine Soil	METMSKWTLILAWIACVVLGAVVGFGAGWVLWQIGFELIGSAVSMVGAGVGGIAAFLWFLQWSEDRGR*
Ga0126379_111136111	3300010366	Tropical Forest Soil	QGRRMSMATAGLILLWIGCVLVGAIVGFLLGYIVWKLGFELIGSAIALVGAGVGGILAFVAVLNWWLDRPDKAKS*
Ga0134124_113505331	3300010397	Terrestrial Soil	RRDRSWTEETMSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQENRNP*
Ga0105246_111978101	3300011119	Miscanthus Rhizosphere	MSGCVLILVWIACVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQEKRNP*
Ga0126317_101978512	3300011332	Soil	TMESMSKFTLILVWIGCVIVGAAVGFGAGYVLWQIGFELIGSAMAIVGAGVGGIAALFWFLQWSEDRQR*
Ga0150985_1018708123	3300012212	Avena Fatua Rhizosphere	MSGLKLTIAWIVCVIVGAVVGGLVGYIVWKLGLELIGGAIALVGAGLGGILAFFWYLQWSENRQTD*
Ga0150985_1030965321	3300012212	Avena Fatua Rhizosphere	MENLGGWTLIVAWVVCVIAGAAAGLAAGWILWQLGFELIGSAVSLVGAGVGGIAAFL
Ga0150985_1051433996	3300012212	Avena Fatua Rhizosphere	MESMGRWTLILVWIGCVILGAIAGFAAGWVLWKIGFELIGSAVALVGAGVGGIVMFLWFLQWSEDRGR*
Ga0150985_1128049891	3300012212	Avena Fatua Rhizosphere	PRRDFPEEITMESMGRWTLILVWIGCVILGAVAGFAAGWVLWKLGFELIGSAVALVGAGVGGIVTFLWFLQWSENRGG*
Ga0150985_1136896773	3300012212	Avena Fatua Rhizosphere	MDTMRGWTLILVWIGCVIVGAAAGFAAGYVLWRLGLELIGSAVAMVGAAVGGILAFFWFLQWSDDRRG*
Ga0150985_1149806162	3300012212	Avena Fatua Rhizosphere	LMSGFALFLVWAGCVLLGAVVGFFLGWILWKLGFEIIGSAVALVGAGAGGIVMFFAFLNWSEDRWR*
Ga0150985_1220285523	3300012212	Avena Fatua Rhizosphere	METMGKWTLLLVWIGCVLIGAAVGFGIGWVLWQLGLELIGSSVALVGAGVGGIAVFFWFLQWSDDHQSR*
Ga0150985_1229058332	3300012212	Avena Fatua Rhizosphere	MEDLQMSNAGLIVAWIVCVVVGAIVGFLAGYVLWKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD*
Ga0150984_1000287814	3300012469	Avena Fatua Rhizosphere	MESMGTWRLILIWIVCVIAGAVAGFAAGYVLWRIGFELIGSAVAVVGAGVGGIAAFLWFLQWSEDRRG*
Ga0150984_1027964312	3300012469	Avena Fatua Rhizosphere	MENLGGWTLILAWVVRVIAGAAAGLAAGWILWQLGFELIGSAVSLVGAGVGGIASFLWFLEWSEDRRG*
Ga0150984_1117988591	3300012469	Avena Fatua Rhizosphere	MSGFALFLVWAGCVLLGAVVGFFLGWILWKLGFEIIGSAVALVGAGAGGIVMFFAFLNWSEDRWR*
Ga0150984_1121795392	3300012469	Avena Fatua Rhizosphere	MDTMKGWTLILVWIGCVIVGAAAGFAAGYVLWMLGLELIGSAVAMVGAAVGGILAFFWFLQWSDDRRG*
Ga0150984_1130767482	3300012469	Avena Fatua Rhizosphere	MESMGRWTLILVWIGCVILGAVAGFAAGWVLWKLGFELIGSAVALVGAGVGGIVTFLWFLQWSENRGG*
Ga0150984_1195187511	3300012469	Avena Fatua Rhizosphere	MGTFGLIMLWIGCVIFGAIAGFLVGYLLWELGFELIGSAVALVGAGVGGIAAFFGVLAWADRRERPRRADG*
Ga0164241_105864871	3300012943	Soil	MQGWKLILAWIACVLLGAAAGFAIGWVVWKLGFELIGSAIAMVGAGVGGIVLFFWFMNWSEDRRA*
Ga0164241_108501451	3300012943	Soil	MSSGKLVAAWIICVILGAAVGWFIGWALWKMGLELIGSAVALVGAGAGGILAFLGFMNWQEGRGKL
Ga0164298_105450382	3300012955	Soil	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQETRNPSAEPQKVCQSLQRR*
Ga0164301_103285111	3300012960	Soil	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALLGARAGGNLVFFGFLNWQENRNP*
Ga0164306_100572811	3300012988	Soil	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFG
Ga0173483_107474472	3300015077	Soil	MSNAGLIVAWVVCVVVGAIVGFLAGYVLRKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD*
Ga0173480_111959981	3300015200	Soil	MQGVKLVVIWILCVLVGAAVGLGAGWLLWKIGFELIGSAVALVGAAVGGIIAFLWFMNWQDNRNQSKL*
Ga0190275_100097983	3300018432	Soil	MSGAKLAFVWVVCVILGAVVGWGIGWVIWKLGFELIGSAVALVGAGAGGIVAFLAFMNWQESRGKL
Ga0190275_100469134	3300018432	Soil	MQGWKLILLWIVFVLVGAAAGFALGWIVWKLGFELIGSAIALVGAAVGGIILFFWFMNWSEDRRA
Ga0190275_100511882	3300018432	Soil	MQGVKLVVIWILCVLVGAAVGLGAGWLLWKIGFELIGSAVALVGAAVGGIIAFLWFMNWQDNRNQSKL
Ga0190275_102845802	3300018432	Soil	MSGAKLIIVWILCVLLGAAAGFLLGWILWELGFELIGSSVALVGSGVGGILAFFAFLNWQDNRGGN
Ga0190275_103859151	3300018432	Soil	MSGWKLILVWIACVLLGAAAGFALGWVAWRLGFELLGSAIALVGAGVGGIIMFFVFLNWSEDRRS
Ga0066662_125112441	3300018468	Grasslands Soil	MGTAGFILLWIACVLAGAVAGFVVGYIVWKLGFELIGSAIALVGAGVGGILAFFAALNLLED
Ga0190271_114248912	3300018481	Soil	MSGWKLVLVWIVCVIVGAALGYLAGWILWKLGFEMIGSAVALVGAGLGGIVMFLAFMNWRDRKSYG
Ga0190271_124713152	3300018481	Soil	MQGWKLILAWIACVLLGAAAGFAIGWVVWKLGFELIGSAIAMVGAGVGGIVLFFWFMNWSEDRRA
Ga0173482_107989501	3300019361	Soil	MEMSGWKLILAWIACVLLGGAVGFAIGWVVWKLGFELIGSAIALAGAGVGGIVMFFAFMNWSDNRQSREP
Ga0206350_116559542	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQENRNP
Ga0163153_104665872	3300020186	Freshwater Microbial Mat	MSGGRLFLVWVGCVLVGAMAGYLLGYVIWRLGFELIGSAVALVGAGIGGILAFMGFMSWNEGREASRRS
Ga0247766_10827421	3300022906	Plant Litter	MEMSGWKLILAWIACVLLGGAVGFAIGWVVWKLGFELIGSAIALAGAGVGGIVMFFAFMNWSDNR
Ga0207707_114171181	3300025912	Corn Rhizosphere	MSGCVLILVWIGCVLVGAAAGYAVGYLIWKLGFELIGSAVALVGAGAGGILVFFGFLNWQENRNP
Ga0207700_102793672	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MGTAGLVLLWIGCVIVGAVVGFFVGYIVWKLGFELIGSAIALVGAGVGGILAFMAALNWLDRPKRAS
Ga0207700_104964521	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VGTAGMVLLWIGCVLLGAIVGFIAGYIVWKLGFELIGSALALVGAGVGGILAFMAALNWLDR
Ga0207712_120761062	3300025961	Switchgrass Rhizosphere	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQENR
Ga0209486_105444461	3300027886	Agricultural Soil	MGTFGMVLLWIGCVIVGAVAGFLAGYVLWKLGFELIGSAVALVGAGAGGILVFFALLAWYDRRGPRPA
Ga0247822_107999701	3300028592	Soil	MSGWKLGLTWVACVVIGAAVGFGLGWVLWKLGFELIGSSVALVGAGAGGILMFLWFMNWSENRRQ
Ga0247822_109669501	3300028592	Soil	MEMSGWKLILAWIVCVLLGGAVGFAIGWVVWKLGFELIGSAIALAGAGVGGIVMFFAFMNWSDNRQSREP
Ga0247820_114055211	3300028597	Soil	MQGWKLILAWIACVLLGAAAGYAIGWVIWQLGFELIGGAIAMVGAGVGGIALFFWFMNWSEDRRTD
Ga0307280_101172661	3300028768	Soil	MSNAGLVVAWVVCVVVGAIVGFLAGYVLWKLGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD
Ga0308200_10047103	3300030905	Soil	METMGKWTLLLVWIGCVLIGAAVGFGIGWVLWQLGLELIGSSVALVGAGVGGIAVFFWFLQWSDDHQSR
Ga0308200_10684722	3300030905	Soil	METMGKWTLILVWIGCVILGAAVGFAAGYVLWQIGFELIGSAVAFVGAGAGGIVAFLWFLQWSEDRQP
Ga0308183_10103264	3300030988	Soil	MESMGTWRLILIWIVCVIAGAVAGFAAGYIIWQLGFELIGSAVAIVGAGVGGIAAFLWFLQW
Ga0308183_10247962	3300030988	Soil	MDTMRGWTLILVWIGCVIVGAAAGFAAGYVLWRLGLELIGSAVAMVGAAVGGILAFFWFLQWSDDRRG
Ga0308183_10489261	3300030988	Soil	METMGKWTLILVWIGCVLLGAAVGFGAGYVLWQIGFELIGSAVMMVGAGVGGIAAFLWFLQWSDDRGR
Ga0308183_11935471	3300030988	Soil	METMGKWTLILVWIGCVLLGAAVGFAAGYVLWQIGFELIGSAVAFVGAGAGGIVAFLWFLQWSEDRQP
Ga0308189_101029091	3300031058	Soil	TMGKWTLLLVWIGCVLIGAAVGFGIGWVLWQLGLELIGSSVALVGAGVGGIAVFFWFLQWSDDHQSR
Ga0314783_033293_94_297	3300034662	Soil	MSGCVLILVWIGCVLLGAAAGYAVGYLLWKLGFELIGSAVALVGAGAGGILVFFGFLNWQEKRNPDM
Ga0314797_151611_246_458	3300034672	Soil	MSNAGLVVAWIVCVVLGAIVGFAAGWVLWKIGFELIGSAVALVGAGVGGIGAFLWFLNWSEDRRKDDFSD
Ga0314798_172389_2_181	3300034673	Soil	MSGCVLILVWIGCVLVGAAAGYAVGYLVWKLGFELIGSAIALVGAGAGGILVFFGFLNWQ
Ga0314801_094020_470_661	3300034676	Soil	METMSKWTLILVWIGCVIVGAAAGFGAGYILWQIGCEIIGSAVALVGAGVGGIAAFFWFLDWSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091544

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences