Metagenome / Metatranscriptome Family F091539

Overview

Basic Information

• Family ID: F091539
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 107
• Average Sequence Length: 67 residues
• Representative Sequence: MQSSTPDDVARQLAEEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
• Number of Associated Samples: 72
• Number of Associated Scaffolds: 107

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 83.18 %
• % of genes near scaffold ends (potentially truncated): 22.43 %
• % of genes from short scaffolds (< 2000 bps): 78.50 %
• Associated GOLD sequencing projects: 62
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (64.486 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand (28.037 % of family members)
• Environment Ontology (ENVO): Unclassified (34.579 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline) (34.579 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 47.92%
  β-sheet: 0.00%
  Coil/Unstructured: 52.08%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01243	Putative_PNPOx	4.67
PF00196	GerE	2.80
PF08281	Sigma70_r4_2	2.80
PF07883	Cupin_2	2.80
PF02467	Whib	2.80
PF03458	Gly_transporter	1.87
PF13427	DUF4111	1.87
PF00248	Aldo_ket_red	1.87
PF13305	TetR_C_33	1.87
PF07077	DUF1345	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.74
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	1.87
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	1.87
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.93
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.93
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	0.93
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	64.49 %
Unclassified	root	N/A	35.51 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	64.49 %
Unclassified	root	N/A	35.51 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	64.49 %
Unclassified	root	N/A	35.51 %

Level 4

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.47 %
Unclassified	root	N/A	35.51 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.79 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
Unclassified	root	N/A	35.51 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	27.10 %
Unclassified	root	N/A	35.51 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	4.67 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.87 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.87 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.87 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Unclassified	root	N/A	35.51 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.87 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.87 %
Unclassified	root	N/A	35.51 %
unclassified Acidimicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales	0.93 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Nocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Unclassified	root	N/A	35.51 %
unclassified Micromonosporaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Unclassified	root	N/A	35.51 %
unclassified Nocardiopsis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → unclassified Nocardiopsis	0.93 %

Level 11

Name	Rank	Taxonomy	Distribution
Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → unclassified Acidimicrobiales → Acidimicrobiales bacterium	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.87 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	4.67 %
Micromonosporaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	0.93 %
Nocardiopsis sp. CNR-923	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Nocardiopsis → unclassified Nocardiopsis → Nocardiopsis sp. CNR-923	0.93 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Unclassified	root	N/A	35.51 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2124908045|KansclcFeb2_ConsensusfromContig62777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	1127
3300000550|F24TB_12363208	Not Available	548
3300000858|JGI10213J12805_11407949	Not Available	631
3300000956|JGI10216J12902_102030420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	2410
3300000956|JGI10216J12902_102357252	All Organisms → cellular organisms → Bacteria	1638
3300000956|JGI10216J12902_110877632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1436
3300003373|JGI25407J50210_10011031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → unclassified Micromonosporaceae → Micromonosporaceae bacterium	2306
3300003373|JGI25407J50210_10045340	Not Available	1121
3300003373|JGI25407J50210_10092349	Not Available	749
3300004016|Ga0058689_10168199	All Organisms → cellular organisms → Bacteria	517

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.64%
Host-Associated	Host-Associated	23.36%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	9.35%
Plants	Host-Associated → Plants	23.36%
Terrestrial	Environmental → Terrestrial	67.29%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Phylloplane	Host-Associated → Plants → Phylloplane	8.41%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.28%
Roots	Host-Associated → Plants → Roots	2.80%
Sediment	Environmental → Aquatic → Sediment	5.61%
Soil	Environmental → Terrestrial → Soil	67.29%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.80%
Loam	Environmental → Terrestrial → Soil → Loam	2.80%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	2.80%
Sand	Environmental → Terrestrial → Soil → Sand	28.04%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.61%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.91%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	28.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.28%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	8.41%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.80%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	28.04%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.74%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.87%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.80%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.61%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	2.80%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.21%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_12790260	2124908045	Soil	LRMQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLDPEEGF
F24TB_123632082	3300000550	Soil	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGEMQFVNWAMAEGPIGLDPEAGI*
JGI10213J12805_114079491	3300000858	Soil	LAEEARPILGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEVGI*
JGI10216J12902_1020304202	3300000956	Soil	MQSHDPGERARLLADETRPLLGADGFSDERIDELASAFVDDRVGEGAAQFVNWARVQGPLGLDPEEGF*
JGI10216J12902_1023572522	3300000956	Soil	MQSHDPGERVRLLADEARPVLGADGFSDERIDELAFAFVDDRVGEGASQFVNWARAQGPIGLDPEEGF*
JGI10216J12902_1108776323	3300000956	Soil	MQSPDDLARRLADQTRPTLGAEGFSDERIDELASAFIDDQIGEGEEQFVNWARAEGPFGIDPEEGF*
JGI25407J50210_100110314	3300003373	Tabebuia Heterophylla Rhizosphere	MQSPDDVARGLAEEARPILGAEGFSDERIDELAFAFVNDHVGEGEAQFVNWALAEGPFGLDPEEGL*
JGI25407J50210_100453402	3300003373	Tabebuia Heterophylla Rhizosphere	MEDASHDAVARQLAEDARPILGAEGFSDERIDELAYAFVNDRVGDDSAQFVNWALAQGPFGLDPEEGL*
JGI25407J50210_100923491	3300003373	Tabebuia Heterophylla Rhizosphere	MQSPDDVARGLAEEARPILGAEGFSDERIDELAFAFVNDHVGEGEAQFVNWALAEGPFGLDP
Ga0058689_101681992	3300004016	Agave	MGSSDREEWLRMQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL*
Ga0066676_108799661	3300005186	Soil	MQSSDPDGVARRLANEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0070713_1003471042	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSSGAAEAARRLAEEARPTLGAEGFSDERIDELAYAFVDDRIGDGVTQFINWAVAQGPIGLDPEEGF*
Ga0058697_100023925	3300005562	Agave	MQNSAPDDAVRRLAEDARPVLGAQGFSDERIDELAYAFVNDHVGKDSAQFVDWALAEGPFGLDPEEGF*
Ga0058697_101330232	3300005562	Agave	MQSAHDPARQLADHTRPILGAEGFSDERIDELASAFVDDHIGEGEEQFVNWARAEGPFGIDPEEGF*
Ga0058697_103468072	3300005562	Agave	MQGAAPDDVARRLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDRDQFVNWAMAEGPFGLDPEEGF*
Ga0066905_1003916052	3300005713	Tropical Forest Soil	MQSSDPDERARLLADEARPLLGADGFSDERIDELAYAFVNDHIGMGTEQFVNWAHAEGPIGLDPQAGF*
Ga0081455_101933023	3300005937	Tabebuia Heterophylla Rhizosphere	MQSADPDDLARRLADAARPVLGAEGFSDERIDDLADAFVTDRIGEGEAQFVSWARAEGPFGLDPEEGF*
Ga0075421_1001377362	3300006845	Populus Rhizosphere	MQGTDPDDLARRLADEVRPVLGAEGFSDERIDELAYAFVADHIGMGEAQFVNWARAEGPFGIDPEEGF*
Ga0075421_1002222862	3300006845	Populus Rhizosphere	MRRDDAEEAANRLADEVRPVLGAEGYGDERIDELAHAFVHDRIGEGADEFVMWARAEGPIGLDPEEGF*
Ga0075421_1005025913	3300006845	Populus Rhizosphere	MQSSEDLAGQLADRTRPILGAEGFSDERIDELAYAFVDDHIGEGDEQFVNWARAEGPFGIDPEEGF*
Ga0075418_111927202	3300009100	Populus Rhizosphere	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGETQFVNWAMAEGPIGLDPEAGI*
Ga0105075_10029532	3300009799	Groundwater Sand	DDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPIGLDPEEGF*
Ga0105075_10621191	3300009799	Groundwater Sand	MEDSAQGDIARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL*
Ga0105069_10117792	3300009800	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105056_10494032	3300009801	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELAFAFVTNRVGEGAQQFVNWALAEGPFGLDPEEGF*
Ga0105079_10222401	3300009805	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105061_10186162	3300009807	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVSWAMAEGPFGLDPEAGF*
Ga0105089_10784972	3300009809	Groundwater Sand	MQGAVPDEVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGQGRAQFVNWALSEGPFGLDPEEGF*
Ga0105084_10657131	3300009811	Groundwater Sand	MQSSGPDDVARRLAEEARPILGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0105070_10076723	3300009815	Groundwater Sand	ARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF*
Ga0105070_10481682	3300009815	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF*
Ga0105070_10809471	3300009815	Groundwater Sand	VARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0105062_10596932	3300009817	Groundwater Sand	MQSSGPDDVARRLAEEARPILGAEGFSDERIDELAFAFVNDHIGEGGAQFVNWALAEGPIGLDPEEGF*
Ga0105062_11245852	3300009817	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHIGEGGAQFVSWAMAEGPFGLDPEAGF*
Ga0105078_10509261	3300009823	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF*
Ga0105068_10243341	3300009836	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0126313_100839842	3300009840	Serpentine Soil	MLALTARGKDRSMQGAAPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF*
Ga0126321_14274192	3300010145	Soil	MQGAAPDDLARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLD
Ga0126321_15036502	3300010145	Soil	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLD
Ga0126321_15179741	3300010145	Soil	MDGVADMDGVARRLAEEARPILGAEGFSDQRIDELAYAFVNDRVGEGSTQFVNWAMVEGPVGIDPEEGL*
Ga0126377_100001089	3300010362	Tropical Forest Soil	MQSSDPDERARLLADEARPLLGADGFSDERIDELAYAFVNDHIGRGTEQFVNWAHAEGPIGLDPQAGF*
Ga0138111_11325391	3300010896	Grasslands Soil	MQRSDPDGVARRLADEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0120192_100090572	3300012021	Terrestrial	MQSSGSDDVARWLADEARPILGAEGFSDERVDELAFAFVNDHIGEGEAQFINWALAEGPFGLDPEEGI*
Ga0137374_108260051	3300012204	Vadose Zone Soil	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEA
Ga0137374_112060652	3300012204	Vadose Zone Soil	MRSFDPDERARLLADEARPLLGADGFSDERIDELASAFVDDRVGEGAAQFVNWARAQGPFGLDPEEGF*
Ga0137380_100025812	3300012206	Vadose Zone Soil	MEVVALRLAEQARPTLGAEGFSDQRIDELAFAFVNDHVGEGEAQFVNWALAEGPIGLDPEEGF*
Ga0137380_100312645	3300012206	Vadose Zone Soil	MQSSGPDDVARRLAEEARPVLGAEGFSEERIDELAFAFVNDHVGEGGAQFVNWALAAGPFGLDPEEGF*
Ga0137372_106255571	3300012350	Vadose Zone Soil	MQRSGPDAAASRLAEEARPLLGAEGFSDERIDELASAFVNDHVGKGVEQFVNWAVAEGPFGLDPEEGF*
Ga0137367_100699573	3300012353	Vadose Zone Soil	MRSFDPDERARLLADEARPLLGADGFSDERIDELASAFVNDRIGEGAAQFVNWARAEGPFGLDPEEGF*
Ga0137369_100751162	3300012355	Vadose Zone Soil	MEDSAHGDVASRLAEGARPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEGL*
Ga0137369_104825552	3300012355	Vadose Zone Soil	MQSPDDLARRLADETRPVLGAEGFSDERIDELASAFIADRIGHGEAQFVNWARAEGPFGIDPEEGF*
Ga0137369_105753732	3300012355	Vadose Zone Soil	MEDSAQGDVARQLAEDVRPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEG
Ga0137368_100165757	3300012358	Vadose Zone Soil	MQSSDPDDVARRLAEEARPQLGSEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF*
Ga0137368_105676291	3300012358	Vadose Zone Soil	MEDSAQGDVARQLAEDVRPILGAEGFSDERIDELAYAFVNDHVGDDSSQFVNWARAQGPFGLDPEEGL*
Ga0137385_106015161	3300012359	Vadose Zone Soil	MQSSGPDDVARRLAEEARPVLGAEGFSEERIDELAFAFVNDHVGEGGAQFVNWALAAGPF
Ga0134047_10333951	3300012380	Grasslands Soil	MQSSDPDGVARRLADEARPMLGAEGFSDERIDELAYAFVNDRVGEGGAQFVNWALAEGPIGLDPEEGL*
Ga0134055_12190821	3300012401	Grasslands Soil	MDGVARRLAEEARPILGAEGFSDQRIDELAYAFVNDRVGEGSTQFVNWAMVEGPVGIDPEEGL*
Ga0182000_100237261	3300014487	Soil	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDNNEFVNWALTEGPSGLDPEEGF*
Ga0182000_100308103	3300014487	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL*
Ga0182000_103069292	3300014487	Soil	MQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL*
Ga0184638_100050014	3300018052	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVIWARAQGPFGLDPEEGL
Ga0184638_10082613	3300018052	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDRVGDDSSQFVNWARAQGPFGLDPEEGL
Ga0184638_10294324	3300018052	Groundwater Sediment	MRSPDPDDVARLLADEARPLLGAEGFSDERIDELASAFVTHHVGEGGAQFVNWALAEGPFGLDPEEGF
Ga0184612_101327702	3300018078	Groundwater Sediment	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELASAFVTHHVGEGGAQFVNWALAEGPFGLDPEEGF
Ga0210378_1000008619	3300021073	Groundwater Sediment	MQSSTPDDVARQLAEEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0224452_11162602	3300022534	Groundwater Sediment	DVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEG
Ga0222623_100139145	3300022694	Groundwater Sediment	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGP
Ga0209896_10270831	3300027006	Groundwater Sand	MEDSAQGDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209879_10144322	3300027056	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELAFAFVTNRVGEGAQQFVNWALAEGPFGLDPEEGF
Ga0209875_10086723	3300027209	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELASAFVTHHVGEGAPQFVRWALAEGPFGLDPEEGF
Ga0209875_10183052	3300027209	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF
Ga0209875_10371211	3300027209	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0209846_10074512	3300027277	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWALAEGPFGLDPEEGL
Ga0209846_10167992	3300027277	Groundwater Sand	MQGAVPDEVARQLAEDARPVLGAEGFSDERIDELAYAFVNDHVGQGRAQFVNWALSEGPFGLDPEEGF
Ga0209861_10496081	3300027332	Groundwater Sand	MQRSDPDEVARLLADEVRPLLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWAMAEGPFGLDPEAGF
Ga0209842_10105662	3300027379	Groundwater Sand	MQSSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0209842_10234883	3300027379	Groundwater Sand	MQSSDPDDVARRLAEEARPQLGAEGFSDERIDELAFAFVNDHVGEGGAQFVSWAMAEGPFGLDPEAGF
Ga0209843_10053191	3300027511	Groundwater Sand	ARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209887_10084495	3300027561	Groundwater Sand	MEDSAQGDIARQLAEDARPILGAEGFSDERIDELAYAFVNDHVGNDSSQFVNWARAQGPFGLDPEEGL
Ga0209874_10339593	3300027577	Groundwater Sand	MQSSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0209795_100854782	3300027718	Agave	MQGTAPDDVARQLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDNDQFVNWALTEGPFGLDPEEGF
Ga0209814_103936272	3300027873	Populus Rhizosphere	MPSPAKDEIARRLAEEARPTLGAEGFSDERIDELAFAFVNDMIGEGEMQFVNWAMAEGPIGLDPEAGI
Ga0209382_101992592	3300027909	Populus Rhizosphere	MRRDDAEEAANRLADEVRPVLGAEGYGDERIDELAHAFVHDRIGEGADEFVMWARAEGPIGLDPEEGF
Ga0209382_107851292	3300027909	Populus Rhizosphere	MQGTDPDDLARRLADEVRPVLGAEGFSDERIDELAYAFVADHIGMGEAQFVNWARAEGPFGI
Ga0209382_120598371	3300027909	Populus Rhizosphere	MQSSEDLAGQLADRTRPILGAEGFSDERIDELAYAFVDDHIGEGDEQFVNWARAEGPFGIDPEEGL
Ga0209889_10653532	3300027952	Groundwater Sand	MQRSDPDEVARLLADEARPLLGAEGFSDERIDELASAFVTHHIGEGGPQFVNWALAEGPFGLDPEEGF
Ga0209857_10234511	3300027957	Groundwater Sand	MQNSAPDDVARQLAAEARPVLGAEGFSDERIDELAYAFVNDHVGEGRAQFVNWALAEGPFGLDPEEGF
Ga0307301_100113943	3300028719	Soil	MPSSGSDDLARQLAEEARPVLGPEGFSDERIDELAFAFVNDGIGEGETQFVNWALAEGPIGLDPEAGF
Ga0307318_100261823	3300028744	Soil	PMPSSGSDDLARQLAEEARPVLGPEGFSDERIDELAFAFVNDGIGEGETQFVNWALAEGPIGLDPEAGF
Ga0307282_101274442	3300028784	Soil	MQRPDDRARELADHTRPILGAEGFNDERIDELAYAFVDDHIGEGEEQFVNWARAVGPFGIDPEEGL
Ga0307310_102667641	3300028824	Soil	ASPIGANRGRTSMQRPDDRARELADHTRPILGAEGFNDERIDELAYAFVDDHIGEGEEQFVNWARAVGPFGIDPEEGL
Ga0307312_102766212	3300028828	Soil	QSAGPDDVARRLAEEARPVLGADGFSDERIDELAFAFVNDHVGEGGAQFVRWALAEGPFGLDPEEGF
Ga0307278_101537081	3300028878	Soil	MQSSGPDDVARRLAEEARPVLGAEGFSDERIDELAFAFVNDHVGEGGAQFVNWALAEGPFGLDP
Ga0307278_103660901	3300028878	Soil	MQSPAPDDVARQLAEDARPVLGAEGFSDERIDELAYAFVNDHVGQDRAQFVNWALAEGPFGLDPEEGF
Ga0268243_10387592	3300030510	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL
Ga0268243_11410372	3300030510	Soil	MQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL
Ga0268241_100032572	3300030511	Soil	MRDSAPDDAARRLVEEARPVLGAEGFSDERIDELAHAFVNDHIGKDSAEFVNWARAEGPFGLDPEEGF
Ga0268241_101677542	3300030511	Soil	SDREEWLRMQSAHDPARQLADHTRPILGAEGFSNERIDELAYAFVDDHVGEGEEQFVNWARAEGPFGIDPEEGL
Ga0268255_101266021	3300030516	Agave	MVRSDPDGAARRRADAARPLLGAEGFGGRRTDELASTFLTDHVGEGGAQFLGWARAEGPVGLDPEVGL
Ga0307408_1005508441	3300031548	Rhizosphere	MQGAVPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHIGEDRAQFVNWALAEGPFGLDPEEGF
Ga0307405_101162202	3300031731	Rhizosphere	MQGAAPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0307406_112056371	3300031901	Rhizosphere	MQGAVPDEVARRLAEDARAVLGAEGFSDERIDELAYAFVNDHVGEDRAQFVNWALAEGPFGLDPEEGF
Ga0268251_100011927	3300032159	Agave	MQNSAPDDAVRRLAEDARPVLGAQGFSDERIDELAYAFVNDHVGKDSAQFVDWALAEGPFGLDPEEGF
Ga0268251_100194615	3300032159	Agave	MHSAHDPARQLADRTRPILGAEGFSNERIDELASAFVDDHIGQGEDQFVNWARAEGPFGIDPEEGL
Ga0268251_100216394	3300032159	Agave	DDAARRLVEEARPVLGAEGFSDERIDELAYAFVNDHIGKDSAQFVNWALAEGPFGLDPEEGL
Ga0268251_102042612	3300032159	Agave	MQGAVPDDVARRLAEDARPILGAEGFSDERIDELAYAFVNDHIGEDKDQFVNWALTEGPFGLDPEEGF
Ga0334913_000838_4604_4810	3300034172	Sub-Biocrust Soil	MQGAAPDDLARQLAEDARPILGAEGFSDERIDELAYAFVNDRIGEDRDQFVNWAMSEGPFGLDPEEGF