Metagenome Family F091525

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F091525
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	43 residues
Representative Sequence	VLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Number of Associated Samples	90
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	4.00 %
% of genes near scaffold ends (potentially truncated)	87.85 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	85
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (55.140 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.299 % of family members)
Environment Ontology (ENVO)	Unclassified (38.318 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.794 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.29% β-sheet: 14.29% Coil/Unstructured: 81.43%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13557	Phenol_MetA_deg	11.21
PF10011	DUF2254	2.80
PF04392	ABC_sub_bind	1.87
PF01226	Form_Nir_trans	1.87
PF12787	EcsC	1.87
PF01740	STAS	1.87
PF00916	Sulfate_transp	1.87
PF00216	Bac_DNA_binding	1.87
PF07885	Ion_trans_2	0.93
PF00119	ATP-synt_A	0.93
PF04185	Phosphoesterase	0.93
PF07311	Dodecin	0.93
PF01648	ACPS	0.93
PF00291	PALP	0.93
PF01988	VIT1	0.93
PF13936	HTH_38	0.93
PF00239	Resolvase	0.93
PF05661	DUF808	0.93
PF09084	NMT1	0.93
PF09298	FAA_hydrolase_N	0.93
PF13592	HTH_33	0.93
PF00583	Acetyltransf_1	0.93
PF03969	AFG1_ATPase	0.93
PF00196	GerE	0.93
PF03976	PPK2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	1.87
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.87
COG2116	Formate/nitrite transporter FocA, FNT family	Inorganic ion transport and metabolism [P]	1.87
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	1.87
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	1.87
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG0179	2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93
COG2354	Membrane protein MutK/YedI, may be involved in DNA repair	Replication, recombination and repair [L]	0.93
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.93
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.93
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.93
COG1485	Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.93
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.14 %
Unclassified	root	N/A	44.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.14 %
Unclassified	root	N/A	44.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.14 %
Unclassified	root	N/A	44.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.50 %
Oligoflexia	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.08 %
Bdellovibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.93 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.93 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.48 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.87 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %
Woeseiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae	0.93 %
Bdellovibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae	0.93 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.54 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.87 %
unclassified Pseudobdellovibrionaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → unclassified Pseudobdellovibrionaceae	0.93 %
Woeseia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia	0.93 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.87 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.87 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.87 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.93 %
Pseudobdellovibrionaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → unclassified Pseudobdellovibrionaceae → Pseudobdellovibrionaceae bacterium	0.93 %
Woeseia oceani	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → Woeseia oceani	0.93 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.86 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.87 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.87 %
Methylocystis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	1.87 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.93 %
Pseudobdellovibrionaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → unclassified Pseudobdellovibrionaceae → Pseudobdellovibrionaceae bacterium	0.93 %
Woeseia oceani	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → Woeseia oceani	0.93 %
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	0.93 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02RT6CU	Not Available	527	Open in IMG/M
3300000550\|F24TB_11752136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10018591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1672	Open in IMG/M
3300000956\|JGI10216J12902_102418532	Not Available	546	Open in IMG/M
3300003994\|Ga0055435_10161560	Not Available	629	Open in IMG/M
3300004081\|Ga0063454_101875387	Not Available	527	Open in IMG/M
3300004267\|Ga0066396_10007780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1215	Open in IMG/M
3300004479\|Ga0062595_100133966	All Organisms → cellular organisms → Bacteria → Proteobacteria	1403	Open in IMG/M
3300005295\|Ga0065707_10533245	Not Available	733	Open in IMG/M
3300005332\|Ga0066388_106921845	Not Available	571	Open in IMG/M
3300005435\|Ga0070714_101244319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	726	Open in IMG/M
3300005713\|Ga0066905_100515019	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300005764\|Ga0066903_100911332	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300005764\|Ga0066903_102935235	Not Available	924	Open in IMG/M
3300005764\|Ga0066903_107872291	Not Available	547	Open in IMG/M
3300005764\|Ga0066903_108581627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	520	Open in IMG/M
3300005764\|Ga0066903_108920078	Not Available	508	Open in IMG/M
3300005937\|Ga0081455_10008269	All Organisms → cellular organisms → Bacteria → Proteobacteria	10848	Open in IMG/M
3300005937\|Ga0081455_10209725	All Organisms → cellular organisms → Bacteria	1452	Open in IMG/M
3300006057\|Ga0075026_100401649	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300006057\|Ga0075026_100843239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	559	Open in IMG/M
3300006059\|Ga0075017_100583593	Not Available	853	Open in IMG/M
3300006086\|Ga0075019_10187130	Not Available	1222	Open in IMG/M
3300006847\|Ga0075431_100081026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	3351	Open in IMG/M
3300007788\|Ga0099795_10349480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	661	Open in IMG/M
3300009839\|Ga0116223_10520810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	691	Open in IMG/M
3300010046\|Ga0126384_11682227	Not Available	599	Open in IMG/M
3300010159\|Ga0099796_10320622	Not Available	661	Open in IMG/M
3300010358\|Ga0126370_12395971	Not Available	524	Open in IMG/M
3300010359\|Ga0126376_13111761	Not Available	513	Open in IMG/M
3300010375\|Ga0105239_11136526	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300010379\|Ga0136449_103996178	Not Available	551	Open in IMG/M
3300011444\|Ga0137463_1181233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	791	Open in IMG/M
3300012202\|Ga0137363_10349753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bdellovibrionales → Bdellovibrionaceae → unclassified Pseudobdellovibrionaceae → Pseudobdellovibrionaceae bacterium	1223	Open in IMG/M
3300012355\|Ga0137369_10311548	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300012948\|Ga0126375_10212481	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1280	Open in IMG/M
3300014299\|Ga0075303_1002217	All Organisms → cellular organisms → Bacteria	2035	Open in IMG/M
3300014321\|Ga0075353_1073488	Not Available	754	Open in IMG/M
3300015200\|Ga0173480_10577851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	686	Open in IMG/M
3300015371\|Ga0132258_13891029	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300015372\|Ga0132256_103002237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	567	Open in IMG/M
3300015373\|Ga0132257_101131703	All Organisms → cellular organisms → Bacteria → Proteobacteria	989	Open in IMG/M
3300016270\|Ga0182036_11350331	Not Available	596	Open in IMG/M
3300016357\|Ga0182032_10394640	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300016357\|Ga0182032_11462128	Not Available	593	Open in IMG/M
3300016371\|Ga0182034_10712794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	854	Open in IMG/M
3300016387\|Ga0182040_10550529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	928	Open in IMG/M
3300016445\|Ga0182038_11003634	All Organisms → cellular organisms → Bacteria → Proteobacteria	739	Open in IMG/M
3300016445\|Ga0182038_11246112	Not Available	664	Open in IMG/M
3300016445\|Ga0182038_11391822	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300017974\|Ga0187777_10290844	Not Available	1115	Open in IMG/M
3300018064\|Ga0187773_10404386	Not Available	791	Open in IMG/M
3300018085\|Ga0187772_11289582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis	540	Open in IMG/M
3300020199\|Ga0179592_10350659	Not Available	650	Open in IMG/M
3300021178\|Ga0210408_11091791	Not Available	614	Open in IMG/M
3300021401\|Ga0210393_11436803	Not Available	550	Open in IMG/M
3300021560\|Ga0126371_10365067	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300021560\|Ga0126371_11348248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300025916\|Ga0207663_10246507	All Organisms → cellular organisms → Bacteria → Proteobacteria	1313	Open in IMG/M
3300026557\|Ga0179587_10683267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	676	Open in IMG/M
3300026557\|Ga0179587_11187075	Not Available	502	Open in IMG/M
3300027880\|Ga0209481_10667902	Not Available	539	Open in IMG/M
3300027915\|Ga0209069_10446150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	718	Open in IMG/M
3300028796\|Ga0307287_10342504	Not Available	564	Open in IMG/M
3300028885\|Ga0307304_10346663	Not Available	663	Open in IMG/M
3300031184\|Ga0307499_10345251	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031226\|Ga0307497_10332640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → Woeseia oceani	706	Open in IMG/M
3300031231\|Ga0170824_101090635	Not Available	985	Open in IMG/M
3300031573\|Ga0310915_10700030	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300031640\|Ga0318555_10533135	All Organisms → cellular organisms → Bacteria → Proteobacteria	636	Open in IMG/M
3300031680\|Ga0318574_10835488	Not Available	539	Open in IMG/M
3300031724\|Ga0318500_10544795	Not Available	585	Open in IMG/M
3300031744\|Ga0306918_10500134	All Organisms → cellular organisms → Bacteria → Proteobacteria	952	Open in IMG/M
3300031747\|Ga0318502_10570563	Not Available	680	Open in IMG/M
3300031748\|Ga0318492_10240160	All Organisms → cellular organisms → Bacteria → Proteobacteria	934	Open in IMG/M
3300031748\|Ga0318492_10632204	Not Available	572	Open in IMG/M
3300031763\|Ga0318537_10030882	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1906	Open in IMG/M
3300031768\|Ga0318509_10268488	All Organisms → cellular organisms → Bacteria → Proteobacteria	953	Open in IMG/M
3300031780\|Ga0318508_1226598	Not Available	536	Open in IMG/M
3300031792\|Ga0318529_10243595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	836	Open in IMG/M
3300031819\|Ga0318568_10056254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2282	Open in IMG/M
3300031846\|Ga0318512_10174787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1044	Open in IMG/M
3300031879\|Ga0306919_10054757	All Organisms → cellular organisms → Bacteria	2657	Open in IMG/M
3300031880\|Ga0318544_10215899	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300031890\|Ga0306925_10519852	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300031890\|Ga0306925_11944745	All Organisms → cellular organisms → Bacteria → Proteobacteria	557	Open in IMG/M
3300031910\|Ga0306923_11698625	Not Available	652	Open in IMG/M
3300031910\|Ga0306923_12150408	Not Available	561	Open in IMG/M
3300031912\|Ga0306921_10045915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4947	Open in IMG/M
3300031945\|Ga0310913_10176356	All Organisms → cellular organisms → Bacteria → Proteobacteria	1487	Open in IMG/M
3300031945\|Ga0310913_10456403	All Organisms → cellular organisms → Bacteria → Proteobacteria	907	Open in IMG/M
3300031946\|Ga0310910_11001704	Not Available	653	Open in IMG/M
3300032039\|Ga0318559_10463037	Not Available	591	Open in IMG/M
3300032043\|Ga0318556_10199600	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300032052\|Ga0318506_10007513	All Organisms → cellular organisms → Bacteria → Proteobacteria	3471	Open in IMG/M
3300032068\|Ga0318553_10267143	All Organisms → cellular organisms → Bacteria → Proteobacteria	894	Open in IMG/M
3300032076\|Ga0306924_11310417	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300032261\|Ga0306920_100499875	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300032805\|Ga0335078_10919684	Not Available	1048	Open in IMG/M
3300034819\|Ga0373958_0208112	Not Available	515	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.65%
Host-Associated	Host-Associated	9.35%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.11%
Plants	Host-Associated → Plants	9.35%
Aquatic	Environmental → Aquatic	6.54%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.11%
Sediment	Environmental → Aquatic → Sediment	5.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.36%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.61%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.87%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.06%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.61%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.80%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.89%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.41%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.61%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	1.87%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.87%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.87%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003994	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300011444	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014299	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D1	Environmental	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026947	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 6 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_06202690	2070309004	Green-Waste Compost	RKIQKARSLALNGTNGPLHWRDLQIGGAVVPPGAQPDDRVEFVVPIDRE
prs_05262820	2070309004	Green-Waste Compost	MGVHGPLLWRDLQTGGGVLPAGAKPDHAVEFHFPMDGQNKARG
F24TB_117521362	3300000550	Soil	LILNGVHGPLQWRDLQIGGAVVPAGARLEDYVEFHVPIDAKK*
AF_2010_repII_A001DRAFT_100185913	3300000793	Forest Soil	VLALNGIHGPLQWRDLQTGGTVLTPGATLDDPVEFIVQMDRE*
JGI10216J12902_1024185321	3300000956	Soil	SLYGVDGALHWRDLQIEGHVLPASATADDPVEFIVSMD*
Ga0055435_101615602	3300003994	Natural And Restored Wetlands	ILNGVRGPLQWRDLQTGGAVIPPGVTLEDPVEFIVPMDRE*
Ga0063454_1018753871	3300004081	Soil	RVVLILNGVHGPLQWSDLQTSGAVIPHGVQSDDPVEFNVSMDRQ*
Ga0066396_100077802	3300004267	Tropical Forest Soil	PFLQSFMEVRIERSRRRVVLALNGVHGPLQWRDLQTGGTVPPPGATLDDPVEFVVQMDRE
Ga0062595_1001339661	3300004479	Soil	VVLALNGVDGPLYWRDLQTGGAILPPNATPDDPVEFVVHMDSD*
Ga0065707_105332451	3300005295	Switchgrass Rhizosphere	RRVVLALNGVDGPLYWRDLQTGGAILPPNATPDDPVEFVVQMDSD*
Ga0066388_1069218451	3300005332	Tropical Forest Soil	RRVVLALNGVHGPLRWQDLQIGGALLPPNVGLGAPVEFIVQMD*
Ga0070667_1006799792	3300005367	Switchgrass Rhizosphere	LNGVDGPLRWRDLQIGGAAFPAGASLSDPVEFVVPMDRD*
Ga0070714_1012443191	3300005435	Agricultural Soil	LILNGVDGPLRWRDLQTGGASFPAGSSLSDPVEFIVPMDRE*
Ga0066905_1005150192	3300005713	Tropical Forest Soil	SKRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE*
Ga0066903_1009113322	3300005764	Tropical Forest Soil	GVDGPLRWRDLQIDGAVMPAGRAPDDPVEFVVPMDHE*
Ga0066903_1029352351	3300005764	Tropical Forest Soil	VLNGVDGPLHWRDLETGGAVIPPNRALDDPVEFIVPMDSK*
Ga0066903_1078722912	3300005764	Tropical Forest Soil	LVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVQMDRE*
Ga0066903_1085816272	3300005764	Tropical Forest Soil	VHGPLQWRDLETGGAVIPPGVTLDDPVEFVVSMDRQ*
Ga0066903_1089200781	3300005764	Tropical Forest Soil	RVERSKKRVVLILNGVHGPLQWRDLETGGAVIRPGVTLDDPVEFVVSMDGQ*
Ga0081455_1000826915	3300005937	Tabebuia Heterophylla Rhizosphere	VVLALNGIHGPLQWRDLQTGGAVLPLGATLDDPVEFIVQMDRE*
Ga0081455_102097254	3300005937	Tabebuia Heterophylla Rhizosphere	VVLVPNRTHGPLQWRDLQTGGTVLPSGGSLDDPAEFIVQMDRE*
Ga0075026_1004016491	3300006057	Watersheds	VVLILNGVHGPLQWSDLQTSGAVIPLGVKPDDPVEFIVSMDRQ*
Ga0075026_1008432392	3300006057	Watersheds	IVLALYGVDGSLRWRDLQIGGDVLPASATVDDPVEFIVSMD*
Ga0075017_1005835931	3300006059	Watersheds	SKKRVVLVLNGVHGPLRWRDLQTGGAVIPLGAKPDDPVEFIVSMDRQ*
Ga0075019_101871302	3300006086	Watersheds	ILNGVHGPLQWSDLQTSGAVIPLGVKPDDPVEFIVSMDRQ*
Ga0075431_1000810265	3300006847	Populus Rhizosphere	NRVVFALHGIDGPLRWRDLDMRGAVVPEGVTPDGPVEFVVPSQGK*
Ga0099795_103494802	3300007788	Vadose Zone Soil	EVRIERSKKRVVLILNGVHGPLQWSDLQASGAVIPLGVKPDDPVEFIVSMDRQ*
Ga0116223_105208102	3300009839	Peatlands Soil	RVERSKRRVALILHGVQGPLHWRDLQIGGGVLPPNATLDDPVEFLVSMDRD*
Ga0126384_116822272	3300010046	Tropical Forest Soil	SKKRVVLILNGVHGPLQWRDLETGGAVIPPGVTLDDPVEFVVSMDRQ*
Ga0099796_103206221	3300010159	Vadose Zone Soil	GVHGPLQWSDLQTSGAVISLGMKPDDPVEFIVSMDRQ*
Ga0126370_123959711	3300010358	Tropical Forest Soil	VVLVLNGTHGPLQWRDLQTGGTVLPSGASLDNLLEFIVQMDRE*
Ga0126376_131117612	3300010359	Tropical Forest Soil	RVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVQMHRE*
Ga0105239_111365262	3300010375	Corn Rhizosphere	HGPLQWRDLQTGGAVIPPGVTLDDPVEFVVPMDRQ*
Ga0136449_1039961781	3300010379	Peatlands Soil	LILHGVQGPLHWRDLQIGGDVLPPGATLDGPAEFLVPMDHD*
Ga0137463_11812332	3300011444	Soil	RVERSKKRVVLILNGVHGPLQWSDLQTGGAVIPPGVKPDDPVEFIVSMDRQ*
Ga0137363_103497531	3300012202	Vadose Zone Soil	MEVRIERSKKRVVLILNGVHGPLQWSDLQASGAVIPLGAKPDDPVEFIVSMDRQ*
Ga0137369_103115482	3300012355	Vadose Zone Soil	IHGPLQWRDLQTGGTVLPPGATLDDPAEFIVQMDRE*
Ga0126375_102124813	3300012948	Tropical Forest Soil	KKRVVLILNGVHGPLQWRDLETGGAVIPPGVTLDDPVEFVVSMDRQ*
Ga0075303_10022172	3300014299	Natural And Restored Wetlands	MEVRVEHSRKRVVLILNGVHGPPQWRDLKTGGAVIPPDVTLEDPVEFIVPMDRE*
Ga0075353_10734882	3300014321	Natural And Restored Wetlands	VLILNGVHGPLQWRDLQTGGAVIPPGVTLEDPVEFIVPMDRE*
Ga0173480_105778512	3300015200	Soil	LNGIHGPLQWRDLQTGGTVRPPSGTLDDPVEFIVPMDRE*
Ga0132258_138910291	3300015371	Arabidopsis Rhizosphere	ERSKKRVVLILNGVHGPLQWRDLQTGGAVIPPGVTLDGPVEFVVPMDRQ*
Ga0132256_1030022371	3300015372	Arabidopsis Rhizosphere	MALDGIHGPLQWRDLQTGGTRLPPGRKPHDPVEFTVPTDRE*
Ga0132257_1011317032	3300015373	Arabidopsis Rhizosphere	SKRRVVLVLNGIHGPLQWRDLQTGGTVRPPSGTLDDPVEFIVPMDRE*
Ga0182036_113503312	3300016270	Soil	VLALNGAHGPLQWRDLQTGGAVLPPGATFDDPVEFIVPMQRE
Ga0182032_103946401	3300016357	Soil	KRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDSVEFIVQMDRE
Ga0182032_114621282	3300016357	Soil	GVDGPLHWRDLQTGGAVLPSEANEDGPVEFTVTMD
Ga0182034_107127942	3300016371	Soil	LTLYGVDGPLHWRDLQTGGVVLPPEANQDGPVEFTVPME
Ga0182040_105505291	3300016387	Soil	RVVVVLNGTDGPLHWRDLQTGGAVLPSEAQSDSPVEFIVPFL
Ga0182038_110036342	3300016445	Soil	LILNGVSGPLRWRDLQIGGAVLSPDVTLDAPVEFIVPMERDSAG
Ga0182038_112461122	3300016445	Soil	LVLYGVDGPLRWRDLQIGGAALPASETADDPVEFIVSMD
Ga0182038_113918222	3300016445	Soil	VLVLYGVDGPLHWRDLQIGGAALPASETADDPVEFIVSMD
Ga0187777_102908442	3300017974	Tropical Peatland	VERSKRRVVLTLYGVDGPLHWRDLQTGGTVLPPEANQDGPVEFAIPMD
Ga0187773_104043861	3300018064	Tropical Peatland	KRRVALILNGVRGPLHWRDLQVGGNLLPLNAMLDDPVEFLVPMDRD
Ga0187772_112895821	3300018085	Tropical Peatland	LILHGVQGQLLWRDLQIGGEVLPPGATLDDPVEFLVPMDRD
Ga0190272_118864862	3300018429	Soil	VEGPLHWRDLEIRGAVLPDGAKPDDPVEFNVPYRRN
Ga0179592_103506591	3300020199	Vadose Zone Soil	ILNGVHGPLQWSDLQASGAVIPLGAKPDDQVEFIVSMDRQ
Ga0210408_110917911	3300021178	Soil	LVLNGVHGPLRWRDLQTGGAVIPLGTKPDDPVEFIVSMDRQ
Ga0210393_114368031	3300021401	Soil	NGVHGPLRWRDLQTGGAVIPLGAKPDDPVEFIVSMDRQ
Ga0126371_103650671	3300021560	Tropical Forest Soil	KRVVLILNGVHGPLQWRDLQIGGAVIPAGAKPDDYVEFHVPMDGHK
Ga0126371_113482481	3300021560	Tropical Forest Soil	LYGVDGPLHWRDLQTGGAVLPPEANQDGPVEFTVPME
Ga0207663_102465071	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LVLNGIHGPLQWRDLEIGGTVLPAGATPDDPIEFVVPMGRE
Ga0179587_106832672	3300026557	Vadose Zone Soil	VVLILNGVHGPLQWSDLQASGAVIPLGAKPDDPVEFIVSMDRQ
Ga0179587_111870751	3300026557	Vadose Zone Soil	VRIERSKKRVVLILNGVHGPLQWSDLQASGAVIPLGAKPDDQVEFIVSMDRQ
Ga0207853_10222772	3300026947	Tropical Forest Soil	NGPLRWRDLQIGGAVVPPGAQSDDRVEFVVPIDRE
Ga0209481_106679022	3300027880	Populus Rhizosphere	RVERSKRRVVLVLNGIHGPLRWADLQTGGSVVPAGATPDSPVEFIVPMDGS
Ga0209069_104461501	3300027915	Watersheds	LYGVDGSLRWRDLQIGGDVLPASATVDDPVEFIVSMD
Ga0307287_103425041	3300028796	Soil	NGVHGPLQWRDLQTGGAVIPSGVTLDDPAEFIVSMDRQ
Ga0307304_103466632	3300028885	Soil	KRVVLILNGVHGPLQWRDLQTGGAVIPSGVTLDDPAEFIVSMDRQ
Ga0307499_103452511	3300031184	Soil	EVRIERSKKRVVLILNGVHGPLQWSDLQANGAVIPLGVKPDDPVEFIVSMDRQ
Ga0307497_103326402	3300031226	Soil	LILNGVHGPLQWRDLQTGGAVIPSGVTLDDPAEFIVSMDRQ
Ga0170824_1010906352	3300031231	Forest Soil	SKKRVVLILNGVHGPLQWRDLETGGAAIPPGVKPDDPVEFIVPMDRQ
Ga0310915_107000301	3300031573	Soil	RVALVLNGTHGPLHWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Ga0318555_105331351	3300031640	Soil	NGTHGPLQWRDLQTGGTVLPSGASLDDPIEFIVQMDRE
Ga0318574_108354881	3300031680	Soil	LVLNGTHGPLQWRDLQAGGTVLPSGASLDDPVEFIVQMDRE
Ga0318500_105447951	3300031724	Soil	VERSKRRMVLVLNGIHGPLQWRDLQTGGTVLPSGASLDDPVEFIVEMDRE
Ga0306918_105001341	3300031744	Soil	KRVVLTLHGVDGPLRWRDLQTGGAVLPPEANQDGLVEFTVPMD
Ga0318502_105705632	3300031747	Soil	VLVLNGIHGPLQWRDLQTGGTVLPSGASLDDPVEFIVEMDRE
Ga0318492_102401601	3300031748	Soil	NGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMNRE
Ga0318492_106322041	3300031748	Soil	KRVVLILNGVHGPLQWRDLQIGGAVIPANARLDDYVEFHVPMDGH
Ga0318537_100308821	3300031763	Soil	VLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVQMDRE
Ga0318509_102684881	3300031768	Soil	THGPLQWRDLQTGGTVPPSGASLDDPIEFIVQMDRE
Ga0318508_12265981	3300031780	Soil	VHGPLQWRDLQTSGTVAPADATLDDPVEFIVPMDP
Ga0318529_102435952	3300031792	Soil	SKRRVVLTLYGVDGPLHWRDLQTGGVVLPPEANQDGPVEFTVPME
Ga0318568_100562541	3300031819	Soil	SKRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Ga0318512_101747873	3300031846	Soil	ERSKRRVVLTLYGVDGPLHWRDLQTGGAVLPPEANQDGPVEFTVPME
Ga0306919_100547574	3300031879	Soil	VLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Ga0318544_102158991	3300031880	Soil	LILNGVHGPLQWRDLQIGGAVIPANARLDDYVEFHVPMDGH
Ga0306925_105198521	3300031890	Soil	LNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Ga0306925_119447451	3300031890	Soil	LNGTHGPLQWRDLQTGGTVLPSGASLDDSVEFIVQMDRE
Ga0306923_116986251	3300031910	Soil	VLILNDVHGPLHWRDLQTGGTVRPPGATLDDPVEFIVPMDGE
Ga0306923_121504081	3300031910	Soil	VVLVLNGTHGPLQWRDLQTGGTVLPSAASLDDPVEFIVQMNRE
Ga0306921_100459157	3300031912	Soil	RVERTKKRLVLILNDVHGPLHWRDLQTGGTVRPPGATLDDPVEFIVPMDGE
Ga0310912_107307262	3300031941	Soil	NGTNGPLRWRDLQIGGAVVPTGAQPDDRVEFVVPIDRE
Ga0310913_101763562	3300031945	Soil	ERSKRRVVLVLNGIHGPLQWRDLQTGGTVLPSGASLDDPVEFIVEMDRE
Ga0310913_104564032	3300031945	Soil	SKRRVVLILNGTHGPLQWRDLQTGGTVLPSGASLDGSVEFIVRMDHQ
Ga0310910_110017041	3300031946	Soil	THGPLQWRDLQTGGTVLPPGVSLDDPVEFIVQMDRE
Ga0310910_113909011	3300031946	Soil	VLALNGTNGPLHWRDLQIGGAVVPPGAQPDDRVEFVVPIDRE
Ga0318559_104630372	3300032039	Soil	VLALNGAHGPVQWRDLQTGGAVLPPGGTFDDPVEFIVPMPRE
Ga0318556_101996001	3300032043	Soil	SKRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPIEFIVQMDRE
Ga0318506_100075134	3300032052	Soil	SKRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMNRE
Ga0318553_102671431	3300032068	Soil	VLVLNGTHGPLQWRDLQTGGTVLPSGASLEDPVEFIVQMDRE
Ga0306924_113104172	3300032076	Soil	RGPLKWHDLQIGGAVLPPGGSLDDPVEFMVPMDRE
Ga0306920_1004998754	3300032261	Soil	ERSKRRVVLVLNGTHGPLQWRDLQTGGTVLPSGASLDDPVEFIVPMDRE
Ga0335078_109196842	3300032805	Soil	RRVVLTLYGVDGPLHWRDLQTGGTVLPPEANQDDPVEFAVPMD
Ga0318519_104369491	3300033290	Soil	TIGPLHWRDLQIGGAVPPPGAQPDDRVEFVVPIDRE
Ga0373958_0208112_1_111	3300034819	Rhizosphere Soil	IHGPLQWRDLEIGGTVLPAGATPDDPIEFVVPMGRE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F091525

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences