NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F091414

Metagenome Family F091414

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091414
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 61 residues
Representative Sequence MKTLITTLALASLVATSAVAKTVHTTHVDGSNIYQSNSLGHQSYPNPDRDFSIENLSSHA
Number of Associated Samples 62
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 95.33 %
% of genes near scaffold ends (potentially truncated) 14.95 %
% of genes from short scaffolds (< 2000 bps) 73.83 %
Associated GOLD sequencing projects 54
AlphaFold2 3D model prediction Yes
3D model pTM-score0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (65.421 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(38.318 % of family members)
Environment Ontology (ENVO) Unclassified
(47.664 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(58.879 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 36.36%    β-sheet: 0.00%    Coil/Unstructured: 63.64%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.24
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00248Aldo_ket_red 7.48
PF00873ACR_tran 7.48
PF00005ABC_tran 5.61
PF14137DUF4304 2.80
PF02518HATPase_c 1.87
PF07883Cupin_2 1.87
PF03466LysR_substrate 0.93
PF13365Trypsin_2 0.93
PF13924Lipocalin_5 0.93
PF13437HlyD_3 0.93
PF14525AraC_binding_2 0.93
PF13505OMP_b-brl 0.93
PF01650Peptidase_C13 0.93
PF13358DDE_3 0.93
PF04546Sigma70_ner 0.93
PF04052TolB_N 0.93
PF13570PQQ_3 0.93
PF00486Trans_reg_C 0.93
PF03649UPF0014 0.93
PF02163Peptidase_M50 0.93
PF00383dCMP_cyt_deam_1 0.93
PF05598DUF772 0.93
PF13426PAS_9 0.93
PF01292Ni_hydr_CYTB 0.93
PF00190Cupin_1 0.93
PF08238Sel1 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0390ABC-type iron transport system FetAB, permease componentInorganic ion transport and metabolism [P] 0.93
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 0.93
COG0823Periplasmic component TolB of the Tol biopolymer transport systemIntracellular trafficking, secretion, and vesicular transport [U] 0.93
COG1969Ni,Fe-hydrogenase I cytochrome b subunitEnergy production and conversion [C] 0.93
COG2864Cytochrome b subunit of formate dehydrogenaseEnergy production and conversion [C] 0.93
COG3038Cytochrome b561Energy production and conversion [C] 0.93
COG3658Cytochrome b subunit of Ni2+-dependent hydrogenaseEnergy production and conversion [C] 0.93
COG4117Thiosulfate reductase cytochrome b subunitInorganic ion transport and metabolism [P] 0.93
COG5206Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8Posttranslational modification, protein turnover, chaperones [O] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A65.42 %
All OrganismsrootAll Organisms34.58 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002907|JGI25613J43889_10104384All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300002914|JGI25617J43924_10318572Not Available537Open in IMG/M
3300002914|JGI25617J43924_10326302Not Available531Open in IMG/M
3300002917|JGI25616J43925_10118060All Organisms → cellular organisms → Bacteria1081Open in IMG/M
3300004633|Ga0066395_10005317Not Available4505Open in IMG/M
3300004633|Ga0066395_10415777Not Available761Open in IMG/M
3300004633|Ga0066395_10494426Not Available704Open in IMG/M
3300005332|Ga0066388_100054454All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium4158Open in IMG/M
3300005332|Ga0066388_100151828Not Available2896Open in IMG/M
3300005332|Ga0066388_101590340All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium1149Open in IMG/M
3300005764|Ga0066903_100003712All Organisms → cellular organisms → Bacteria → Proteobacteria12591Open in IMG/M
3300005764|Ga0066903_100169213Not Available3191Open in IMG/M
3300005764|Ga0066903_100576653All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1940Open in IMG/M
3300007255|Ga0099791_10003412All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales6461Open in IMG/M
3300007255|Ga0099791_10287428Not Available783Open in IMG/M
3300007255|Ga0099791_10304158All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300007258|Ga0099793_10129275Not Available1186Open in IMG/M
3300007258|Ga0099793_10241518Not Available871Open in IMG/M
3300009038|Ga0099829_11122820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei652Open in IMG/M
3300009792|Ga0126374_10225992Not Available1204Open in IMG/M
3300010043|Ga0126380_10024213All Organisms → cellular organisms → Bacteria2972Open in IMG/M
3300010043|Ga0126380_10537129Not Available906Open in IMG/M
3300010043|Ga0126380_11342150Not Available625Open in IMG/M
3300010043|Ga0126380_12060791Not Available524Open in IMG/M
3300010047|Ga0126382_10718499Not Available840Open in IMG/M
3300010358|Ga0126370_10550044All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga massiliensis986Open in IMG/M
3300010358|Ga0126370_10903431Not Available798Open in IMG/M
3300010358|Ga0126370_12179876Not Available546Open in IMG/M
3300010360|Ga0126372_10007440Not Available5532Open in IMG/M
3300010360|Ga0126372_11309188Not Available754Open in IMG/M
3300010361|Ga0126378_11475045Not Available771Open in IMG/M
3300010376|Ga0126381_103498855Not Available617Open in IMG/M
3300010398|Ga0126383_10073521All Organisms → cellular organisms → Bacteria2951Open in IMG/M
3300011269|Ga0137392_10955625All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300011270|Ga0137391_10448106Not Available1098Open in IMG/M
3300011270|Ga0137391_10772798Not Available793Open in IMG/M
3300011271|Ga0137393_10569338Not Available972Open in IMG/M
3300012189|Ga0137388_10147008All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2083Open in IMG/M
3300012202|Ga0137363_10269089All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1390Open in IMG/M
3300012202|Ga0137363_10341329Not Available1237Open in IMG/M
3300012208|Ga0137376_10212710Not Available1674Open in IMG/M
3300012211|Ga0137377_10065362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3395Open in IMG/M
3300012361|Ga0137360_10160169Not Available1793Open in IMG/M
3300012361|Ga0137360_10897546Not Available764Open in IMG/M
3300012361|Ga0137360_11166250Not Available666Open in IMG/M
3300012361|Ga0137360_11462223Not Available587Open in IMG/M
3300012683|Ga0137398_10003644All Organisms → cellular organisms → Bacteria6898Open in IMG/M
3300012683|Ga0137398_11121141Not Available541Open in IMG/M
3300012917|Ga0137395_10193011Not Available1415Open in IMG/M
3300012917|Ga0137395_10578648Not Available811Open in IMG/M
3300012925|Ga0137419_10509408Not Available956Open in IMG/M
3300012925|Ga0137419_10559886All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium914Open in IMG/M
3300012925|Ga0137419_11446948Not Available581Open in IMG/M
3300012944|Ga0137410_11408641All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei606Open in IMG/M
3300012971|Ga0126369_10938544Not Available952Open in IMG/M
3300015054|Ga0137420_1455056Not Available2108Open in IMG/M
3300015241|Ga0137418_10650671Not Available818Open in IMG/M
3300017970|Ga0187783_10019615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales4992Open in IMG/M
3300020199|Ga0179592_10171051All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria990Open in IMG/M
3300020581|Ga0210399_10320929All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylocystis → Methylocystis bryophila1293Open in IMG/M
3300021086|Ga0179596_10030298All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2077Open in IMG/M
3300021086|Ga0179596_10166945Not Available1056Open in IMG/M
3300021086|Ga0179596_10407509Not Available686Open in IMG/M
3300021170|Ga0210400_10126531Not Available2043Open in IMG/M
3300021478|Ga0210402_10025957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales5045Open in IMG/M
3300021478|Ga0210402_10069011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium3122Open in IMG/M
3300021478|Ga0210402_11621644Not Available574Open in IMG/M
3300021559|Ga0210409_11107089Not Available667Open in IMG/M
3300021560|Ga0126371_11092986Not Available937Open in IMG/M
3300021560|Ga0126371_11615368Not Available774Open in IMG/M
3300024330|Ga0137417_1092849All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium994Open in IMG/M
3300026304|Ga0209240_1134639Not Available813Open in IMG/M
3300026304|Ga0209240_1233310Not Available560Open in IMG/M
3300026320|Ga0209131_1308115Not Available590Open in IMG/M
3300026340|Ga0257162_1024859Not Available727Open in IMG/M
3300026340|Ga0257162_1035561All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300026340|Ga0257162_1041900Not Available574Open in IMG/M
3300026341|Ga0257151_1021011Not Available686Open in IMG/M
3300026345|Ga0257148_1009941Not Available719Open in IMG/M
3300026351|Ga0257170_1000643All Organisms → cellular organisms → Bacteria → Proteobacteria3055Open in IMG/M
3300026351|Ga0257170_1031219Not Available719Open in IMG/M
3300026354|Ga0257180_1063361Not Available534Open in IMG/M
3300026359|Ga0257163_1004524All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1957Open in IMG/M
3300026359|Ga0257163_1015331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1174Open in IMG/M
3300026369|Ga0257152_1034495Not Available547Open in IMG/M
3300026475|Ga0257147_1007499Not Available1393Open in IMG/M
3300026481|Ga0257155_1001526All Organisms → cellular organisms → Bacteria → Proteobacteria2539Open in IMG/M
3300026499|Ga0257181_1103377Not Available505Open in IMG/M
3300026551|Ga0209648_10104713All Organisms → cellular organisms → Bacteria → Proteobacteria2311Open in IMG/M
3300026551|Ga0209648_10127066All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2047Open in IMG/M
3300026551|Ga0209648_10167696All Organisms → cellular organisms → Bacteria1715Open in IMG/M
3300026551|Ga0209648_10379608Not Available947Open in IMG/M
3300026551|Ga0209648_10492212Not Available719Open in IMG/M
3300026557|Ga0179587_10172577Not Available1358Open in IMG/M
3300027605|Ga0209329_1136689Not Available539Open in IMG/M
3300027643|Ga0209076_1023503Not Available1688Open in IMG/M
3300027655|Ga0209388_1057236Not Available1125Open in IMG/M
3300027874|Ga0209465_10013265Not Available3707Open in IMG/M
3300027874|Ga0209465_10030247Not Available2548Open in IMG/M
3300027874|Ga0209465_10648651Not Available520Open in IMG/M
3300027903|Ga0209488_10070863Not Available2584Open in IMG/M
3300027903|Ga0209488_10476421Not Available917Open in IMG/M
3300027903|Ga0209488_10526744Not Available864Open in IMG/M
3300027903|Ga0209488_10778334Not Available680Open in IMG/M
3300031720|Ga0307469_10022134All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium3485Open in IMG/M
3300031720|Ga0307469_10034859All Organisms → cellular organisms → Bacteria → Proteobacteria2978Open in IMG/M
3300032180|Ga0307471_100107909All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2551Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil38.32%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.69%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil15.89%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil11.21%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil11.21%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.80%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300026341Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-AEnvironmentalOpen in IMG/M
3300026345Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-AEnvironmentalOpen in IMG/M
3300026351Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-BEnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026359Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-AEnvironmentalOpen in IMG/M
3300026369Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-AEnvironmentalOpen in IMG/M
3300026475Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-AEnvironmentalOpen in IMG/M
3300026481Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-AEnvironmentalOpen in IMG/M
3300026499Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25613J43889_1010438423300002907Grasslands SoilMKTIITTLALASLVATSAVAKSVHTKSLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
JGI25617J43924_1031857213300002914Grasslands SoilSMKTIITTLALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
JGI25617J43924_1032630223300002914Grasslands SoilMKTLITTLTLASLVATSAFAKTAVHARHVDSSDIYQSDSMGHQSFPNPDRDFSIENLSSHAS*
JGI25616J43925_1011806023300002917Grasslands SoilMKTIITTLALASLVATSAVAKSVHAKSVDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
Ga0066395_1000531753300004633Tropical Forest SoilMKTTIAISVFASLVATSAVAKTEKGHTTHVDRSNIYQSDSLGHQSYPNPNRDFSIENLTSHAN*
Ga0066395_1041577713300004633Tropical Forest SoilMKTSLAISVFASLVATSAVAKIEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHEH*
Ga0066395_1049442623300004633Tropical Forest SoilMRTIIAILAFTSVVATVAVAKTEHGQTTDRSNIYQSDSLGYQSYPNPNRDFGIENLRSHAN*
Ga0066388_10005445433300005332Tropical Forest SoilMKTIIAISVFASLVATSAVAKTDNGHTTHLDRSNIYQSDALGHQSYPNPNRDFSIENLRSHAN*
Ga0066388_10015182813300005332Tropical Forest SoilMKTIIAISVFASLVATSAVAKIEKGHTTNVDRTNMYQSDSLRHQSYPNPDRDFSIENLRSHEN*
Ga0066388_10159034033300005332Tropical Forest SoilMKTIITILAFTALVANSAVAKTEKGQTTDRSDIYQSDSLGKQSFPNPNRDFGIENLRSHAN*
Ga0066903_10000371283300005764Tropical Forest SoilMKTIIAISLFASLVATSAVAKTEKGNTTHVDRSNIYQSDSLGYQSYPNPNRDFRIENLGSHAN*
Ga0066903_10016921343300005764Tropical Forest SoilMKTSLAILVFASLVATSAVAKIEKGRTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHQH*
Ga0066903_10057665363300005764Tropical Forest SoilMKTSLAILVFASLVATSAVAKIEKGQTTHFDRSDTYQSDSLGHQSFPNPDRDFSIENLRSHEH*
Ga0099791_10003412113300007255Vadose Zone SoilMKTLITTLTLASLVATSAFAKTAVHTRHVDGSNLYQSDSLGHQSYPNPDRDFSIENLSSHAS*
Ga0099791_1028742813300007255Vadose Zone SoilMKTIIAILAFASLVATSAVAKTEKGHTTDRSNIYKSDSLGYQSFPNPDRDFSIENLRSHAN*
Ga0099791_1030415813300007255Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
Ga0099793_1012927523300007258Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTKSLDHSNVYQSDSLGHQSYPNPDRDFSIENLSSHAS*
Ga0099793_1024151813300007258Vadose Zone SoilMKTIIAILAFASLVATSAVAKTEKGHTTDRSNIYQSDSLGYQSFPNPNRDFSIENLRSHAN*
Ga0099829_1112282023300009038Vadose Zone SoilMKTLITTLRLASLVATSAFAKTAVHTRHVDGSNLYQSDSLGHQSYPNPDRDFSIENLRSHPSG*
Ga0126374_1022599223300009792Tropical Forest SoilMKTSLAILIFASLVATSAVAKIEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHAH*
Ga0126380_1002421313300010043Tropical Forest SoilMKTSLAILVFASLVATSAVAKVEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHAH*
Ga0126380_1053712913300010043Tropical Forest SoilMKTSLAILIFASLVATSAVAKIEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHEH*
Ga0126380_1134215013300010043Tropical Forest SoilMKTIITILAFTALVANSAVAKTEKGQTMDRSDIYQSDSLGKQSYPNPNRD
Ga0126380_1206079113300010043Tropical Forest SoilMKTIIAISVFASLVATSAVAKTEKGHTTNVDRTNMYQSDSLGHQLFPNPDRDFSIENLRSHEN*
Ga0126382_1071849923300010047Tropical Forest SoilMKTVIAISVFASLVATSAVAKTEKGHTTNVDRSNMYQSDSLGHQSYPNPDRDFSIENLRSHEN*
Ga0126370_1055004413300010358Tropical Forest SoilMKTIITILAFTALVANSAVAKTEKGQTTDRSDIYQSDSLGKQSYPNPNRDFGIDNLRSHAN*
Ga0126370_1090343113300010358Tropical Forest SoilMKTIIAISVFASLVATSAVAKIEKGRTTNVDRTNMYQSDSLRHQSYPNPDRDFSIENLRSHEN*
Ga0126370_1217987613300010358Tropical Forest SoilMKTIIAISVFASLVATSAVAKTEKGHTTNVDRTNMYQSDSLGHQSFANPDRDFSIE
Ga0126372_1000744043300010360Tropical Forest SoilMKTSLAILVFASLVATSAVAKIEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHEH*
Ga0126372_1130918813300010360Tropical Forest SoilMKTIITILAFTALVANSAVAKTEKGQTTDRSDIYQSDSLGKQSYPNPNRDFG
Ga0126378_1147504523300010361Tropical Forest SoilMKTIIAISVFASLVATSAVAKTEKDNTTHVDRSNIYQSDALGHQSYPNPNRDFSIENLRSHAN*
Ga0126381_10349885513300010376Tropical Forest SoilTQSGETSMKTIIAISVFASLVATSAVAKTEKDNTTHVDRSNIYQSDSLGYQSYPNPNRDFSIENLRSHAN*
Ga0126383_1007352123300010398Tropical Forest SoilMKTIIAISVFASLVATSAVAKTEKDNTTHVDRSNIYQSDSLGYQSYPNPNRDFSIENLSSHAN*
Ga0137392_1095562523300011269Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIESLSSHAS*
Ga0137391_1044810623300011270Vadose Zone SoilMKTLITTLALASLVATSAVAKTAVHAGHVDRSNIYESDSLGHQSFPNPDRDFSIENLSSHAS*
Ga0137391_1077279823300011270Vadose Zone SoilMKTLITTLALASLVATSAFAQTAARSGHVDHGNVYESESLGHQSFPNPDRDYSIENLSSHA*
Ga0137393_1056933823300011271Vadose Zone SoilMKTIIAILAFASVVATSAVAKPEKGHTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHEN*
Ga0137388_1014700823300012189Vadose Zone SoilMKSLITTLTLASLVATSAFAKTAVHTRHVDSSDIYQSDSLGHQSFPNPDRDFSIENLSSHAS*
Ga0137363_1026908943300012202Vadose Zone SoilMKTIITTLALASLVATSAVAKLVHTKPLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
Ga0137363_1034132933300012202Vadose Zone SoilMKTIIAILAFTSLVATSAVAKTEKGQTTDRSNIYQSDSLGYQSYPNPNRDFSIENLRSHAN*
Ga0137376_1021271023300012208Vadose Zone SoilMKTIIAILVFASLVATSAVAKTEKRHSTHVDRSNIYESYSLGRQSFPNPDRDFSIENLRSHAN*
Ga0137377_1006536253300012211Vadose Zone SoilMKTIIAILVFASLVATSAVAKTEKRHSTHVDRSNIYESYSLGRQSFPNPDRDF
Ga0137360_1016016923300012361Vadose Zone SoilMKTIIAILAFASVVATSAVAKTEKGHTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHEN*
Ga0137360_1089754623300012361Vadose Zone SoilETSMKTLITTLALASLVATSAFAKTAVYVDHGNVYESESLGHQPFPNPDRDYSIENLSSHA*
Ga0137360_1116625023300012361Vadose Zone SoilMKTIITTLALASLFATSAVAKSVHTKSLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
Ga0137360_1146222323300012361Vadose Zone SoilMKTLITTLALASLVATSAVAEIVHTTHVDRSDIYQSDSLGHQSYPNPDRDFSIENLSSHAS*
Ga0137398_1000364463300012683Vadose Zone SoilMKTIIAILAFASVVATSAVAKPEKGRTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHEN*
Ga0137398_1112114113300012683Vadose Zone SoilMKTIITTLALASLVATSAAAKSVHTESLDHSNVYQSESLGHQSYPNPDR
Ga0137395_1019301133300012917Vadose Zone SoilMKTIIAILAFASVVATSAVAMTEKGHTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHEN*
Ga0137395_1057864823300012917Vadose Zone SoilMKIIITRLALASLVATSAAAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSH
Ga0137419_1050940823300012925Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHAG*
Ga0137419_1055988623300012925Vadose Zone SoilMKTIIAILAFASLVATSAVAKTEKGHTTDRSNIYQSDSLGYQSYPNPNRDFSIENLRSHAN*
Ga0137419_1144694813300012925Vadose Zone SoilSMKTIITTLALASLVATSAVAKIVHAKPVDHGNVYQSESLGHQSYPNPDRDFSIENLSSHAS*
Ga0137410_1140864113300012944Vadose Zone SoilMKTIITTLALASLVATSAVAKIVHAKPVDHSNVYQSESLGHQSYPNPDRDFSIEN
Ga0126369_1093854413300012971Tropical Forest SoilMKTSLAISVFASLVATSAVAKIEKGQTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHAH*
Ga0137420_145505643300015054Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTASLGPQQRIPSESLGPSSYPNPDRDFSIENLSSHAS*
Ga0137418_1065067123300015241Vadose Zone SoilMKTLITTLALASLVATSAFARTAVQTRHVDHSNVYESESLGHQSFPNPDRDYSIENLSSHAS*
Ga0187783_1001961553300017970Tropical PeatlandMKTLITTLVLTSLVATSAFANAAVHARHVDHSNVYESKSLGHQSFSNPDRDFSIENLSSHAS
Ga0179592_1017105123300020199Vadose Zone SoilMKTIIAILAFASLVATSAVAKTEKGHTTDRSNIYQSDSLGYQSFPNPDRDFSIENLRSHA
Ga0210399_1032092933300020581SoilMKTLITTLALASLVAASAVAKTVHTTHVDGSNIYQSNSLGHQSYPNPDRDFSIENLSSHA
Ga0179596_1003029823300021086Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTKSLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0179596_1016694523300021086Vadose Zone SoilMKTIIAILAFASVVATSAVAKTEKGHTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHE
Ga0179596_1040750913300021086Vadose Zone SoilMKTIITILMFASLVATSAVAKTEKGNTAPVDRSNIYQSDSLGHQSSPNPDRDFSIENLRSHAN
Ga0210400_1012653133300021170SoilMKTLITTLALACLVAASAVAKTVHTTHVDGSNIYQSNSLGHQSYPNPDRDFSIENLSSHA
Ga0210402_1002595723300021478SoilMKTIITTLALASLVATSAVAKIVHAKPVDHGNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0210402_1006901113300021478SoilMKTLITTLALASLVAASAVAKTVHTTHVDGSNIYQSNSLGHQSYPNPDRDFSIENLS
Ga0210402_1162164423300021478SoilMKIIITILMFTSFVATSAVAKTEKGNTARVDRSNIYQSDSLGHQSSPNPDRDFNIENLRSHAN
Ga0210409_1110708913300021559SoilMKTLIGTLALVSLVATSAFAKTAVHTRNVDHSNVYESESLGHQSFPNPDRDYSIENLSRS
Ga0126371_1109298633300021560Tropical Forest SoilMKTSLAILVFASLVATSAVAKIEKGRTTHFNRSDTYQSDSLGHQSFPNPDRDFSIENLSSHQH
Ga0126371_1161536823300021560Tropical Forest SoilMKTIIAISVFASLVATSAVAKTEKGNTTHVDRSNIYQSDSLGYQSYPNPNRDFGIENLRSHAN
Ga0137417_109284913300024330Vadose Zone SoilMKTIITTLALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0209240_113463923300026304Grasslands SoilMKTLITTLALASLVATSTVAEIVHTTHVDRGDIYQSDSLGHQSYPNPDRDFSIENLSSHA
Ga0209240_123331013300026304Grasslands SoilMKTIIATLVFASLIATSAVAKTEKGNTTHVDRSNIYQSDSLGHQSSPNPDRDFGIENLRSHAN
Ga0209131_130811513300026320Grasslands SoilMKTLITTLTLASLVATSAFAKTTVHTRHGDSSDIYQSDSLGHQSFPNPDRDFSIENLSSHAS
Ga0257162_102485923300026340SoilMKTIIATLVFASLIATSAIAKTEKGNTTHVDRSNIYQSDSLGHQSSPNPDRDFSIENLRSHAN
Ga0257162_103556123300026340SoilMKTIITTFALASLVATSAVAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0257162_104190013300026340SoilMKILITTLALASLVATTAFAKTAVHTRNVDHSNVYESESLGHQS
Ga0257151_102101123300026341SoilMKVLITTLALASLVATSAFAKTAVHTRNVDHSNVYESESLGHQSFPNPDRDYSIENLSRS
Ga0257148_100994123300026345SoilMKTIITTLALASLVATSAVAKSVHAKSVDHSNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0257170_100064323300026351SoilMKTIITILMFASLVATSAVAKTEKGNTAPVDRSNIYQSDSLGHQSSPNPDRDFSIENLGSHAN
Ga0257170_103121913300026351SoilMKTIIAILAFTSLVATSAVAKTEKAKITDRSNIYQSDSLGYQSYPNPNRDFSIENLRSHA
Ga0257180_106336113300026354SoilMKTLITTLTLASLVATSAFAKTAVHARHVDSSDIYQSDSMGHQSYPNPDRDFS
Ga0257163_100452433300026359SoilMKTIITTLALASLVATSAVAKSVHAKSVDHGNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0257163_101533133300026359SoilMKTLITTLALASLVATSAFAKTAVHTRNVDHSNVYESESLGHQSFPNPDRDYSIENLSRS
Ga0257152_103449513300026369SoilMKTIITILMFASLVATSAVAKTEKGNTAPVDRSNIYRSDSLGHQSSPNPDRDFSIENLRSHAN
Ga0257147_100749913300026475SoilMKTLITTLALASLVATSAVAKTVHTTHVDGSNIYQSNSLGHQSYPNPDRDFSIENLSSHA
Ga0257155_100152623300026481SoilMKTIIATLVFASLIATSAIAKTEKGNTTHVDRSNIYQSDSLGHQSSPNPDRDFSIENLGSHAN
Ga0257181_110337713300026499SoilMKIIITRLALASLVATSAAAKSVHTESLDHSNVYQSESLGHQSYPNPDRDFSIENLSSHA
Ga0209648_1010471323300026551Grasslands SoilMKTLITTLTLASLVATSAFAKTAVHARHVDSSDIYQSDSMGHQSFPNPDRDFSIENLSSHAS
Ga0209648_1012706623300026551Grasslands SoilMKTIIATLVFASLIATSAIAKTEKGNTTHVDRSNIYQSDSLGHQSSPNSDRDFSIENLRSHAN
Ga0209648_1016769613300026551Grasslands SoilMKTVIAILVFASLVATSAVAKTEKGHTTDVDRSNMYQSDSLGHQSYPNPDRDFSIENLRSHAN
Ga0209648_1037960823300026551Grasslands SoilMKTIIATLVFASLIATSAVAKTEKGNTTHVDRSNIYQSDSLGHQSSPNPDRDFSIENLRSHAN
Ga0209648_1049221213300026551Grasslands SoilMKTIIAILAFASLAATSAVAKTEKGHTTDHSNIYQSDSLGYQSSPNPDRDFSIENLRSHA
Ga0179587_1017257723300026557Vadose Zone SoilFAKETSMKTLITTLALASLVATSVLAKTVHATHVNGSNLYQSDSLGHQSYPNPDRDFSIENLSSHAS
Ga0209329_113668913300027605Forest SoilMKTLISTLALVSLVATSAFAKTVVHTRNVDHSNVYESESLGHQSFPNPDRDYSIENLSRS
Ga0209076_102350323300027643Vadose Zone SoilMKTLITTLTLASLVATSAFPKTAVHARHVDSSDIYQSDSMGHQSYPNPDRDFSIENLSSHAS
Ga0209388_105723623300027655Vadose Zone SoilMKTLITTLTLASLVATSAFAKTAVHTRHVDGSNLYQSDSLGHQSYPNPDRDFSIENLSSHAS
Ga0209465_1001326543300027874Tropical Forest SoilMKTSLAILVFASLVATSAVAKIEKGQTTHFDRSDTYQSDSLGHQSFPNPDRDFSIENLSSHEH
Ga0209465_1003024713300027874Tropical Forest SoilMKTTIAISVFASLVATSAVAKTEKGHTTHVDRSNIYQSDSLGHQSYPNPNRDFSIENLTSHAN
Ga0209465_1064865123300027874Tropical Forest SoilMKTIIAISLFASLVATSAVAKTEKGNTTHVDRSNIYQSDSLGYQSYPNPNRDFRIENLGSHAN
Ga0209488_1007086323300027903Vadose Zone SoilMKTIIAILAFASVVATSAVAKPEKGHTTDRSNIYQSDSLGYQSSPNPDRDFSIENLRSHE
Ga0209488_1047642133300027903Vadose Zone SoilMKTLITTLALASLVATSAFAKTAVHTTNVDHSNVYESESLGHQSFPNPDRDYSIENLSSHGI
Ga0209488_1052674423300027903Vadose Zone SoilMKALITTLALASLVATSAVAKTVHTKPVDHSNVYQSDSLGHQAYPNPDRDFSIENLSSHA
Ga0209488_1077833423300027903Vadose Zone SoilMKTIIAILVFASLVATSAVAKTEKGNTTRVDRSNIYQSDSLGHQSQPNPDRDFSIENLRSHAN
Ga0307469_1002213423300031720Hardwood Forest SoilMKTLIAALALVSFFAASAAAKTAVHTTHVDRSNTYESDSLGHQSLPNPDRDFSIENLRSHAS
Ga0307469_1003485963300031720Hardwood Forest SoilMKTLITILTLASLVATSAVAKTEVHTKHVDRSNIYESDSLGHQSSPNPDRDFSIENLSSHAS
Ga0307471_10010790943300032180Hardwood Forest SoilMKTLITTLALASLVATSAFAKTAVHTRKVDHSNVYESESLGHQSFPNPDRDYSIENLSRS


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