Basic Information | |
---|---|
Family ID | F091357 |
Family Type | Metagenome |
Number of Sequences | 107 |
Average Sequence Length | 49 residues |
Representative Sequence | MKTSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKIRVDL |
Number of Associated Samples | 83 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 29.91 % |
% of genes near scaffold ends (potentially truncated) | 68.22 % |
% of genes from short scaffolds (< 2000 bps) | 85.98 % |
Associated GOLD sequencing projects | 76 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.65 |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (85.047 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine (19.626 % of family members) |
Environment Ontology (ENVO) | Unclassified (71.963 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) (95.327 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
Structure Viewer | |
---|---|
| |
Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.65 |
Powered by PDBe Molstar |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Marine Marine Aqueous Seawater Freshwater To Marine Saline Gradient Marine Seawater Estuarine Salt Marsh Marine Methane Seep Mesocosm Pelagic Marine Seawater Pelagic Marine Freshwater And Marine Marine Water Marine |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
DelMOSpr2010_102601011 | 3300000116 | Marine | MKTSAHGLQKKLRREQLHEIWLRKNLKSSSQHWECRKNILKLNTKIKIDHQ |
OpTDRAFT_102230352 | 3300000928 | Freshwater And Marine | MKQSAHGLQKKLRREQHHEQWLRKNLKSSTQHWECRKNILKLNTKIRIPK* |
JGI20152J14361_101048782 | 3300001344 | Pelagic Marine | MKTSVHGLQKKLCREQRHEIWLRKNLKSSKQHWECRKNILKLNTKIKI |
JGI20156J14371_100731961 | 3300001347 | Pelagic Marine | MKTSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKIRVDLQK* |
JGI20154J14316_100637282 | 3300001348 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLYTKLQVHEHKNEGCL* |
JGI20154J14316_101934432 | 3300001348 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILK |
JGI20158J14315_100883292 | 3300001355 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKICVDLQK* |
M2t6FKB1_14441942 | 3300002136 | Marine | MKPSVHKLQKKLKREQQHELWLRKNLESSTQHWECRKNIFKLNTAIRVDNQK* |
JGI26253J51717_10146994 | 3300003583 | Marine | MKQSAHGLQKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLNAKIRILK* |
Ga0066605_100492434 | 3300004279 | Marine | FLFMKQSAHGLQKKLRREQHHEQWLRKNLKSSSQHWECRKNILKLNTKIKIDLQK* |
Ga0066605_102077712 | 3300004279 | Marine | MKTSVHGLKKKLHREQHHEQWLRKNLKRSKQHWECRKNILKLNTKIRVDLQK* |
Ga0066605_102901991 | 3300004279 | Marine | MMTSVHGLKKKLSREQQHEQWLRKNLKSSKQHWECRKNILKLNTKIRIPK* |
Ga0066606_100665682 | 3300004280 | Marine | MKQSAHGLQKKLRREQLHEIWLRKNLKSSSQHWECRKNILKLNTKIKIDLQK* |
Ga0102821_10586002 | 3300007557 | Estuarine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKDILKLNAKIRILK* |
Ga0102948_10678133 | 3300007623 | Water | MKTSAHGLKKKLRREQQHELWLRKNLKSSKQHWECRKNIFKLHTEIAFGKNEPTQKPK* |
Ga0102948_12823341 | 3300007623 | Water | MKQSVHKLQKKLRREQQHELWLRKNLTSTKQHWECRKNILKLHTEIAFGQNDATQKSK* |
Ga0075480_106403912 | 3300008012 | Aqueous | MKPSVHKLQKKLRREQQHELWLRKNLKSSKQHWECRKNILKLRTEIRVD |
Ga0105349_102308552 | 3300008253 | Methane Seep Mesocosm | MKQLVHGLQKKLRREQLHEQWLRKNLKSSTQHWECRKNILKLNTKIKIDLQK* |
Ga0102889_10693983 | 3300008964 | Estuarine | MKQSVHGLKKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLN |
Ga0115566_100782851 | 3300009071 | Pelagic Marine | MKPSVHKLQKKLRREQRHEQWLRKNLKSSKQHWECRKNILKLNTK |
Ga0115566_107366271 | 3300009071 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNT |
Ga0115550_10202361 | 3300009076 | Pelagic Marine | VYFKHMKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLYTKLQVHEHKNEGCL* |
Ga0115550_10554114 | 3300009076 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTK |
Ga0115550_10646914 | 3300009076 | Pelagic Marine | MKTSAHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTK |
Ga0115552_11687961 | 3300009077 | Pelagic Marine | MKPSVHKLQKKLRREQQHELWLRKNLKSTKQHWECRKNVLKLNTKIRVDLQK |
Ga0115551_11115714 | 3300009193 | Pelagic Marine | MKQSAHGLQKKLRREQQHEQWLRKNLKSSKQHWECRKNILKLYTKLQVH |
Ga0114993_106926142 | 3300009409 | Marine | FIFLFMKQSAHGLKKKLRREQLHEQWLRKNLKHTREHWECRKNILKLNTKIRVDHQK* |
Ga0114994_105179752 | 3300009420 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKEYLKAQY* |
Ga0114998_101251053 | 3300009422 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRK |
Ga0114998_102093861 | 3300009422 | Marine | MKPSAHKLQKKLKKEQLHEQWLRKNLKSSSQHWECRKNILKLNTKIKIGLQK* |
Ga0115559_10215551 | 3300009438 | Pelagic Marine | RTDMKTSVHGLKKKLRREQHHELWLRKNLKSSKQHWECRKNILKLYTKLQVHEHKNEGCL |
Ga0115561_10907614 | 3300009440 | Pelagic Marine | MKQSAHGLQKKLRREQQHEQWLRKNLKSSKQHWECRKNILKLYTKLQVHE |
Ga0115554_10276421 | 3300009472 | Pelagic Marine | MKTSAHGLQKKLHREQQHEQWLRKNLKSSKQHWECRKNILKLNTKVRVDLQK* |
Ga0115554_10316281 | 3300009472 | Pelagic Marine | MKQSAHGLQKKLRREQQHEQWLRKNLKSSKQHWECRKNILKLYTKLQVHEHKNEGCL* |
Ga0115571_13916481 | 3300009495 | Pelagic Marine | MKPSVHKLRKKLKREQQHELWLRKNLKSSSQHWECRKNILKLNTKIRVD |
Ga0115569_101656461 | 3300009497 | Pelagic Marine | KCMKPSVHKLQKKLKREQQHELWLRKNLEISSQHWKCRKNILKLNTKIKIDHQK* |
Ga0115564_102100661 | 3300009505 | Pelagic Marine | KKKLRREQHHEQWLRKNLKSSKQHWECRKDILKLNTKIRVDLRK* |
Ga0115572_100989933 | 3300009507 | Pelagic Marine | MKPSVHKLQKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLN |
Ga0115572_106755561 | 3300009507 | Pelagic Marine | KTLVHGLKKKLRREQQHEHWLRKNLKRSKQHWECRKDILKLNTKIRIPK* |
Ga0115003_100502091 | 3300009512 | Marine | KKLKKEQLHEQWLRKNLKSSSQHWECRKNILKLNTKIKIGLQK* |
Ga0115003_100900093 | 3300009512 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKNILKLNTKIRVDLQK* |
Ga0115006_105492152 | 3300009544 | Marine | MKTSAHGLQKKLKREQQHEIWLRKNLKSSTQHWKCRKNILKLNTKIKIDLQK* |
Ga0133547_109150681 | 3300010883 | Marine | YFLHMKQSVHGLKKKLRREQLHEIWLRKNIKSSAQHWECRKNILKLNTKIRVDPQK* |
Ga0180120_104161371 | 3300017697 | Freshwater To Marine Saline Gradient | MKPSVHKLQKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKI |
Ga0181607_100458734 | 3300017950 | Salt Marsh | SVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKIRVDLQK |
Ga0181607_103551591 | 3300017950 | Salt Marsh | MKPSVHKLQKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKIR |
Ga0181590_109580541 | 3300017967 | Salt Marsh | MKPSVHKLQKKLRREQQYELWLRKNLKSSKQYWECRKNILKLRTEIQLCAAQH |
Ga0181585_100508983 | 3300017969 | Salt Marsh | MKQSVHKLQKKLRREQQHELWLRKNLKSTKQHWECRKNIFKLRTEIRADHQTQ |
Ga0181601_104357162 | 3300018041 | Salt Marsh | MKPSVHKLQKKLRREQQHELWLRKNLKSTQQHWECRKNVLKLRTEIRVNQ |
Ga0181561_101234143 | 3300018410 | Salt Marsh | MKHSVHKLQKKLRREQQHELWLRKNLKSTKQHWECSKNILKLHTEIAFGKNEPTQKP |
Ga0181559_101025491 | 3300018415 | Salt Marsh | MKTSVHGLQKKLRREQHHEIWLRKNLKSSSQHWECRKNILKLNTKLQVHEYKN |
Ga0181553_103998441 | 3300018416 | Salt Marsh | HGLQKKLRREQLHEIWLRKNLKSSSQHWECRKNILKLNTKIKIDHQK |
Ga0181564_106780702 | 3300018876 | Salt Marsh | MKPSVHKLQKKLRREQQHELWLRKNLKSTKQHWECSKNILKLHTEI |
Ga0181554_11988011 | 3300020052 | Salt Marsh | MQLNCMKHSVHKLQKKLRREQQHELWLRKNLKSTKQHWECSKNILKLHTEIAFGKNEPTQKPK |
Ga0181602_102772443 | 3300020173 | Salt Marsh | MKTSAHGLQKKLRREQLHEIWLRKNLKSSKQHWECRKNILKLNTKIRVDLQK |
Ga0181599_11931571 | 3300020178 | Salt Marsh | MKPSVHKLQKKLRREQQHELWLRKNLKSTKQHWECRKNIFKLHTEIAF |
Ga0206129_101855281 | 3300020182 | Seawater | NSVHGLKKKLRREQHHEQWLRKNLKRSKQHWECRKNILKLITEIRVDQK |
Ga0206129_103740591 | 3300020182 | Seawater | MKPSVHKLQKKLRREQQHELWLRKNLKSSKQHWECRKNILKLNTKIRADLQK |
Ga0206129_104154492 | 3300020182 | Seawater | HGLKKKLLREQKHEQWLRKNLKSSKQHWECRKNIFKLNTKIRIPK |
Ga0206130_100189522 | 3300020187 | Seawater | MKTSAHGLQKKLKREQLHEQWLRKNLKSSTQHWECRKNILKLNTKIKIDLQK |
Ga0206130_100587974 | 3300020187 | Seawater | MKQSAHGLKKKLRREQLHEIWLRKNLKSSSQHWECRKNILKLNTKIRVGQS |
Ga0206130_101014832 | 3300020187 | Seawater | MKPSAHKLQKKLKKEQQHELWLRKNLKSSSQHWECRKNILKLNTKIKIDLQK |
Ga0181597_101584451 | 3300020194 | Salt Marsh | MKTSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKL |
Ga0211688_10612812 | 3300020317 | Marine | MKQSAHGLKKKLKREQQHEIWLRKNLKSSTQHWACRKNILKLNTKIRVDLKK |
Ga0211690_10329823 | 3300020335 | Marine | MKQSAHGLKKKLKREPQHEIWLRKNLKSSTQHWACRKNILKLNTKIKIDLQK |
Ga0211504_10306441 | 3300020347 | Marine | MKTSVHGLKKKLLREQKHEQWLRKNLKSSKQHWECRK |
Ga0211689_10519614 | 3300020358 | Marine | KLRREQQHEIWLRKNLKSSTQHWECRKNILKLSTKIRVDLKK |
Ga0211689_11438823 | 3300020358 | Marine | FLFMKQSAHGLQKKLRREQGHEQWLRKNLKASSQHWECRKNILKLNTKIRVGQS |
Ga0211689_12240441 | 3300020358 | Marine | MKQSAHGLKKKLKREQQHEIWLHKNLKSSTQHWACRKNILKLNTKIKIDLQK |
Ga0211683_101548832 | 3300020372 | Marine | MKLSIHKLTKQLEREKQHKQWLEKNLKHSRQHWECRKNILKLNTKIK |
Ga0211687_100735871 | 3300020396 | Marine | MKQSAHGLKKKLKREQQHEIWLRKNLKSSTQHWACRKNILKLNTKIKIDLQK |
Ga0206126_104717411 | 3300020595 | Seawater | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKLQVHEYK |
Ga0181557_11811081 | 3300020601 | Salt Marsh | LKKKLSREQQHEQWLRKNLKSSKQHWECRKNILKLNTKIRIP |
Ga0206123_104697482 | 3300021365 | Seawater | MKQSAHGLQKKLRREQQHEQWLRKNLKSSKQHWECRKNILKLYTKLQVHEHKNEGCL |
Ga0213861_103383841 | 3300021378 | Seawater | MKTSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKIRVDL |
Ga0255752_101240111 | 3300022929 | Salt Marsh | MKHSVHKLQKKLRREQQHELWLRKNLKSTKQHWECSKNILKLHT |
Ga0255780_100885913 | 3300022935 | Salt Marsh | MKPSVHKLQKKLRREQQHELWLRKNLKSTKQHWECRKNILKLRTEIQLCAAQH |
Ga0244776_103024571 | 3300024348 | Estuarine | MKQSAHGLQKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLNAKIR |
Ga0209151_11451521 | 3300025643 | Marine | MKQSVHGLKKKLRREQLHEQWLRKNLKASSQQWECRK |
Ga0209306_10504403 | 3300025680 | Pelagic Marine | NSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKLQVHEYKNEGCL |
Ga0209306_11073373 | 3300025680 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKICVD |
Ga0209505_10418591 | 3300025690 | Pelagic Marine | MKTSAHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKN |
Ga0209653_10646221 | 3300025695 | Marine | MKTSVHGLKKKLHREQHHEQWLRKNLKRSKQHWECRKNILKLNTKIRVDHQK |
Ga0209653_12171551 | 3300025695 | Marine | MKPSVHKLQKKLLREQQHELWLRKNLKSTKQHWECRKNIL |
Ga0209044_12001331 | 3300025709 | Marine | KQSVHGLKKKLRREQLHEQWLRKNLKASSQHWEYRKNILKLNTKIKIDLQK |
Ga0209252_10843302 | 3300025719 | Marine | MKQSVHGLKKKLRREQLHEQWLRKNLKASSQHWEYRKNILKLNTKIKIDLQK |
Ga0209137_10885631 | 3300025767 | Marine | MKQSVHGLKKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLNAKIRILK |
Ga0209193_10364771 | 3300025816 | Pelagic Marine | MKNSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNIL |
Ga0209832_10660971 | 3300025830 | Pelagic Marine | MKTSVHGLKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLN |
Ga0209534_101520961 | 3300025880 | Pelagic Marine | MKPSVHKLQKKLRREQRHEQWLRKNLKSSKQHWECRKNILKLNTKIRVDL |
Ga0209630_100218319 | 3300025892 | Pelagic Marine | LKKKLRREQHHEQWLRKNLKSSKQHWECRKNILKLNTKICVDLQK |
Ga0209630_101054181 | 3300025892 | Pelagic Marine | MKPSVHKLEKKLHREQQHEQWLLKNLKSSKQYWECRKNILK |
Ga0209710_10817152 | 3300027687 | Marine | MKPSAHKLQKKLKKEQLHEQWLRKNLKSSSQHWECRKNILKLNTKIKIGLQK |
Ga0209710_10849611 | 3300027687 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKNILKLNTKIRVDHQK |
Ga0209502_100443713 | 3300027780 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKNILKLNTKIRVDLQK |
Ga0209090_104464881 | 3300027813 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSTQHWECRKNILKLN |
Ga0209092_101644843 | 3300027833 | Marine | MKQSAHGLQKKLRREQLHEQWLRKNLKSSTQHWECRKNILKLNTKIRVGQS |
Ga0209092_106342811 | 3300027833 | Marine | LQKKLKKEQQHELWLRKNLKSSSQHWECRKNILKLNTKIKIDLQK |
Ga0209092_106621401 | 3300027833 | Marine | AHGLKKKLKKEQHHEQWLRKNLKSSSQHWECRKYILKLNTKIKIDLQK |
Ga0209089_103139801 | 3300027838 | Marine | MKLSIHKLTKQLEREKQHKQWLEKNLKHSRQHWECRKNILKLNTKILVD |
Ga0209713_102094121 | 3300027883 | Marine | MKTSAHGLQKKLKREQQHEIWLRKNLKSSTQHWKCRKNILKLNTKIKIDLQK |
Ga0228648_10432801 | 3300028126 | Seawater | MKTSVHGLKKKLHREQHHEQWLRKNLKRSKQHWECRKNILKLNTKIRIPKY |
Ga0257114_10031991 | 3300028196 | Marine | LYFLFMKQSAHGLQKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLNAKIRILK |
Ga0257126_11443011 | 3300028287 | Marine | MKQSAHGLQKKLRREQHHEQWLRKNLKSSTQHWECRKDIL |
Ga0302131_11367091 | 3300031594 | Marine | GLQKKLRREQHHEQWLRKNLKSSTQHWECRKDILKLNAKIRILK |
Ga0302121_101542571 | 3300031626 | Marine | MKQSAHGLKKKLKKEQHHEQWLRKNLKSSSQHWECRKNILKLNTKIKID |
Ga0315322_100749682 | 3300031766 | Seawater | MKQSVHGLKKKLRREQLHEQWLRKNLKASSQHWECRKNILKLNTKIKIDLQK |
⦗Top⦘ |