NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091346

Metagenome / Metatranscriptome Family F091346

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091346
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 43 residues
Representative Sequence SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Number of Associated Samples 68
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.20 %
% of genes from short scaffolds (< 2000 bps) 64.49 %
Associated GOLD sequencing projects 66
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (86.916 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake
(31.776 % of family members)
Environment Ontology (ENVO) Unclassified
(81.308 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(80.374 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.
1Ga0068884_15938291
2Ga0068877_101689011
3Ga0049083_101170381
4Ga0049081_100051781
5Ga0049081_100392693
6Ga0049080_101077803
7Ga0049080_102626102
8Ga0102859_11878813
9Ga0114340_10040831
10Ga0114344_10030551
11Ga0114344_10141361
12Ga0114350_10160333
13Ga0114350_11006201
14Ga0114363_10066451
15Ga0114968_101539571
16Ga0114968_107674542
17Ga0114966_101629981
18Ga0114966_107406041
19Ga0114969_103278021
20Ga0114974_100138184
21Ga0114974_102515633
22Ga0133913_108827901
23Ga0164293_102561633
24Ga0164292_100944381
25Ga0164292_103927661
26Ga0164292_110248181
27Ga0172367_101560391
28Ga0172367_106518022
29Ga0172373_100171525
30Ga0172373_102637751
31Ga0172372_105588313
32Ga0177922_100834893
33Ga0177922_104213411
34Ga0177922_106213951
35Ga0177922_106466741
36Ga0172376_103295583
37Ga0181350_10040913
38Ga0181362_11023141
39Ga0181356_10164743
40Ga0181358_12505162
41Ga0181357_10466871
42Ga0181349_11744501
43Ga0181349_12275891
44Ga0181346_10312193
45Ga0181348_10536713
46Ga0181348_10625473
47Ga0181348_10831264
48Ga0181355_10035914
49Ga0181355_11096823
50Ga0181355_12886973
51Ga0181355_13026521
52Ga0169931_106051631
53Ga0181359_10050923
54Ga0181359_10427151
55Ga0181359_12648011
56Ga0211735_115019522
57Ga0194122_104915521
58Ga0194130_100356161
59Ga0181354_10011041
60Ga0181354_10496343
61Ga0181354_11265871
62Ga0181351_10048173
63Ga0181351_10196203
64Ga0181351_10737693
65Ga0181351_10961831
66Ga0214917_101060653
67Ga0214921_100176801
68Ga0214921_100181631
69Ga0214921_101715593
70Ga0214921_103549803
71Ga0209651_11399423
72Ga0208974_10584291
73Ga0209357_12041082
74Ga0208975_10019716
75Ga0208975_10109131
76Ga0208975_10517381
77Ga0209617_100564391
78Ga0209355_11790431
79Ga0209768_101529203
80Ga0209500_102548851
81Ga0209354_100024255
82Ga0209990_100214033
83Ga0209550_101413661
84Ga0209253_109092843
85Ga0209191_11428791
86Ga0247843_100852615
87Ga0247844_11933003
88Ga0247844_12039391
89Ga0315291_110447511
90Ga0315909_100133126
91Ga0315909_100257441
92Ga0315909_100259071
93Ga0315909_101942033
94Ga0315904_100318651
95Ga0315901_102816751
96Ga0315289_109322231
97Ga0315902_112353142
98Ga0334980_0023222_2546_2659
99Ga0334987_0009499_2_118
100Ga0334987_0011220_8192_8314
101Ga0334987_0097633_9_131
102Ga0334995_0829840_2_133
103Ga0335027_0010467_7912_8028
104Ga0335027_0074445_1_120
105Ga0335031_0670495_1_150
106Ga0335053_0269458_968_1081
107Ga0335007_0093476_3_170
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 90.24%    β-sheet: 0.00%    Coil/Unstructured: 9.76%
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510152025303540SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEESequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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Visualization
All Organisms
Unclassified
86.9%13.1%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Freshwater And Sediment
Freshwater Lake
Freshwater Lentic
Freshwater Lake Sediment
Freshwater
Freshwater, Plankton
Freshwater Lake
Freshwater Lake
Freshwater
Sediment
Freshwater
Estuarine
31.8%8.4%27.1%5.6%9.3%4.7%6.5%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
Ga0068884_159382913300005417Freshwater LakeVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0068877_1016890113300005525Freshwater LakeIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0049083_1011703813300005580Freshwater LenticLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE*
Ga0049081_1000517813300005581Freshwater LenticAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0049081_1003926933300005581Freshwater LenticASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0049080_1010778033300005582Freshwater LenticLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0049080_1026261023300005582Freshwater LenticSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE*
Ga0102859_118788133300007708EstuarineMSDYLVIVSGFFLNLTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLE
Ga0114340_100408313300008107Freshwater, PlanktonADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE*
Ga0114344_100305513300008111Freshwater, PlanktonVIISGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKAWQEFSQDLETMKENKNG*
Ga0114344_101413613300008111Freshwater, PlanktonLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE*
Ga0114350_101603333300008116Freshwater, PlanktonLVIVSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0114350_110062013300008116Freshwater, PlanktonADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0114363_100664513300008266Freshwater, PlanktonEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED*
Ga0114968_1015395713300009155Freshwater LakeSAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0114968_1076745423300009155Freshwater LakeSAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE*
Ga0114966_1016299813300009161Freshwater LakeVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0114966_1074060413300009161Freshwater LakeVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE*
Ga0114969_1032780213300009181Freshwater LakeIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE*
Ga0114974_1001381843300009183Freshwater LakeVIASGFVLNLVSVVEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED*
Ga0114974_1025156333300009183Freshwater LakeLADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED*
Ga0133913_1088279013300010885Freshwater LakeSVVEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED*
Ga0164293_1025616333300013004FreshwaterSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
Ga0164292_1009443813300013005FreshwaterSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED*
Ga0164292_1039276613300013005FreshwaterDDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE*
Ga0164292_1102481813300013005FreshwaterSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE*
(restricted) Ga0172367_1015603913300013126FreshwaterILSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE*
(restricted) Ga0172367_1065180223300013126FreshwaterIEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE*
(restricted) Ga0172373_1001715253300013131FreshwaterSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE*
(restricted) Ga0172373_1026377513300013131FreshwaterSVIEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE*
(restricted) Ga0172372_1055883133300013132FreshwaterLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLETMKENKNG*
Ga0177922_1008348933300013372FreshwaterLADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0177922_1042134113300013372FreshwaterATGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED*
Ga0177922_1062139513300013372FreshwaterGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN*
Ga0177922_1064667413300013372FreshwaterSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED*
(restricted) Ga0172376_1032955833300014720FreshwaterFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE*
Ga0181350_100409133300017716Freshwater LakeTSVVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181362_110231413300017723Freshwater LakeSIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181356_101647433300017761Freshwater LakeFVIITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0181358_125051623300017774Freshwater LakeDYLVIASGFFLNLTSVVEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED
Ga0181357_104668713300017777Freshwater LakeIADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE
Ga0181349_117445013300017778Freshwater LakeALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0181349_122758913300017778Freshwater LakeAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0181346_103121933300017780Freshwater LakeVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE
Ga0181348_105367133300017784Freshwater LakeVEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE
Ga0181348_106254733300017784Freshwater LakeVIITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0181348_108312643300017784Freshwater LakeASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN
Ga0181355_100359143300017785Freshwater LakeSVVEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE
Ga0181355_110968233300017785Freshwater LakeLNLTSIVGALADDLHQLAIYNSTQKSQEEKVWQQFSQEFETLKED
Ga0181355_128869733300017785Freshwater LakeVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181355_130265213300017785Freshwater LakeSAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0169931_1060516313300017788FreshwaterSVIEALADDLHQLALYHTNQKSNESMVWQEFSQDLETLKEE
Ga0181359_100509233300019784Freshwater LakeIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181359_104271513300019784Freshwater LakeNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN
Ga0181359_126480113300019784Freshwater LakeASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0211735_1150195223300020162FreshwaterDYFVIATGFILNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0194122_1049155213300021092Freshwater LakeLTSIFEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE
Ga0194130_1003561613300021376Freshwater LakeADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE
Ga0181354_100110413300022190Freshwater LakeADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181354_104963433300022190Freshwater LakeDYLVILSGFFLNLTSIIEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE
Ga0181354_112658713300022190Freshwater LakeLAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0181351_100481733300022407Freshwater LakeVVEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE
Ga0181351_101962033300022407Freshwater LakeFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0181351_107376933300022407Freshwater LakeTSIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED
Ga0181351_109618313300022407Freshwater LakeRKIVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0214917_1010606533300022752FreshwaterALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED
Ga0214921_1001768013300023174FreshwaterVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0214921_1001816313300023174FreshwaterSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED
Ga0214921_1017155933300023174FreshwaterEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0214921_1035498033300023174FreshwaterTSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0209651_113994233300027581Freshwater LakeFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0208974_105842913300027608Freshwater LenticSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0209357_120410823300027656Freshwater LakeDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0208975_100197163300027659Freshwater LenticASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0208975_101091313300027659Freshwater LenticASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0208975_105173813300027659Freshwater LenticIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0209617_1005643913300027720Freshwater And SedimentSAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0209355_117904313300027744Freshwater LakeEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE
Ga0209768_1015292033300027772Freshwater LakeLAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0209500_1025488513300027782Freshwater LakeTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE
Ga0209354_1000242553300027808Freshwater LakeTSIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE
Ga0209990_1002140333300027816Freshwater LakeSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE
Ga0209550_1014136613300027892Freshwater LakeDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0209253_1090928433300027900Freshwater Lake SedimentAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0209191_114287913300027969Freshwater LakeFVIATGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
(restricted) Ga0247843_1008526153300028569FreshwaterVIVSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE
(restricted) Ga0247844_119330033300028571FreshwaterGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE
(restricted) Ga0247844_120393913300028571FreshwaterATGFILNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0315291_1104475113300031707SedimentASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0315909_1001331263300031857FreshwaterSGFFLNLTSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0315909_1002574413300031857FreshwaterSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKED
Ga0315909_1002590713300031857FreshwaterTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED
Ga0315909_1019420333300031857FreshwaterGFFLNLTSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE
Ga0315904_1003186513300031951FreshwaterIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE
Ga0315901_1028167513300031963FreshwaterIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED
Ga0315289_1093222313300032046SedimentIITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE
Ga0315902_1123531423300032093FreshwaterLISAFEALAEDLHHMSIYYTNQKSQEAKVWQEFAQDLETLKEE
Ga0334980_0023222_2546_26593300033816FreshwaterALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED
Ga0334987_0009499_2_1183300034061FreshwaterEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED
Ga0334987_0011220_8192_83143300034061FreshwaterVIEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKED
Ga0334987_0097633_9_1313300034061FreshwaterVIEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKEE
Ga0334995_0829840_2_1333300034062FreshwaterLTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE
Ga0335027_0010467_7912_80283300034101FreshwaterEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE
Ga0335027_0074445_1_1203300034101FreshwaterIEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKED
Ga0335031_0670495_1_1503300034104FreshwaterTGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED
Ga0335053_0269458_968_10813300034118FreshwaterALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED
Ga0335007_0093476_3_1703300034283FreshwaterDYLVIVSGFFLNLTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE


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