Basic Information | |
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Family ID | F091346 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 43 residues |
Representative Sequence | SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Number of Associated Samples | 68 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 97.20 % |
% of genes from short scaffolds (< 2000 bps) | 64.49 % |
Associated GOLD sequencing projects | 66 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (86.916 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (31.776 % of family members) |
Environment Ontology (ENVO) | Unclassified (81.308 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Water (non-saline) (80.374 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 90.24% β-sheet: 0.00% Coil/Unstructured: 9.76% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
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Visualization |
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Freshwater And Sediment Freshwater Lake Freshwater Lentic Freshwater Lake Sediment Freshwater Freshwater, Plankton Freshwater Lake Freshwater Lake Freshwater Sediment Freshwater Estuarine |
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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Geographical Distribution | |
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Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).
Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0068884_15938291 | 3300005417 | Freshwater Lake | VIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
Ga0068877_101689011 | 3300005525 | Freshwater Lake | IEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
Ga0049083_101170381 | 3300005580 | Freshwater Lentic | LNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE* |
Ga0049081_100051781 | 3300005581 | Freshwater Lentic | AIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0049081_100392693 | 3300005581 | Freshwater Lentic | ASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0049080_101077803 | 3300005582 | Freshwater Lentic | LNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0049080_102626102 | 3300005582 | Freshwater Lentic | SVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE* |
Ga0102859_11878813 | 3300007708 | Estuarine | MSDYLVIVSGFFLNLTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLE |
Ga0114340_10040831 | 3300008107 | Freshwater, Plankton | ADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE* |
Ga0114344_10030551 | 3300008111 | Freshwater, Plankton | VIISGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKAWQEFSQDLETMKENKNG* |
Ga0114344_10141361 | 3300008111 | Freshwater, Plankton | LNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE* |
Ga0114350_10160333 | 3300008116 | Freshwater, Plankton | LVIVSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
Ga0114350_11006201 | 3300008116 | Freshwater, Plankton | ADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
Ga0114363_10066451 | 3300008266 | Freshwater, Plankton | EALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED* |
Ga0114968_101539571 | 3300009155 | Freshwater Lake | SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0114968_107674542 | 3300009155 | Freshwater Lake | SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE* |
Ga0114966_101629981 | 3300009161 | Freshwater Lake | VLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0114966_107406041 | 3300009161 | Freshwater Lake | VLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE* |
Ga0114969_103278021 | 3300009181 | Freshwater Lake | IDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE* |
Ga0114974_100138184 | 3300009183 | Freshwater Lake | VIASGFVLNLVSVVEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED* |
Ga0114974_102515633 | 3300009183 | Freshwater Lake | LADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED* |
Ga0133913_108827901 | 3300010885 | Freshwater Lake | SVVEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED* |
Ga0164293_102561633 | 3300013004 | Freshwater | SGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
Ga0164292_100944381 | 3300013005 | Freshwater | SVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED* |
Ga0164292_103927661 | 3300013005 | Freshwater | DDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE* |
Ga0164292_110248181 | 3300013005 | Freshwater | SVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE* |
(restricted) Ga0172367_101560391 | 3300013126 | Freshwater | ILSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE* |
(restricted) Ga0172367_106518022 | 3300013126 | Freshwater | IEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE* |
(restricted) Ga0172373_100171525 | 3300013131 | Freshwater | SGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE* |
(restricted) Ga0172373_102637751 | 3300013131 | Freshwater | SVIEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE* |
(restricted) Ga0172372_105588313 | 3300013132 | Freshwater | LNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLETMKENKNG* |
Ga0177922_100834893 | 3300013372 | Freshwater | LADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0177922_104213411 | 3300013372 | Freshwater | ATGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED* |
Ga0177922_106213951 | 3300013372 | Freshwater | GFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN* |
Ga0177922_106466741 | 3300013372 | Freshwater | SVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED* |
(restricted) Ga0172376_103295583 | 3300014720 | Freshwater | FLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFTQDLETMREE* |
Ga0181350_10040913 | 3300017716 | Freshwater Lake | TSVVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181362_11023141 | 3300017723 | Freshwater Lake | SIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181356_10164743 | 3300017761 | Freshwater Lake | FVIITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0181358_12505162 | 3300017774 | Freshwater Lake | DYLVIASGFFLNLTSVVEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED |
Ga0181357_10466871 | 3300017777 | Freshwater Lake | IADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE |
Ga0181349_11744501 | 3300017778 | Freshwater Lake | ALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0181349_12275891 | 3300017778 | Freshwater Lake | AEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0181346_10312193 | 3300017780 | Freshwater Lake | VEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE |
Ga0181348_10536713 | 3300017784 | Freshwater Lake | VEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE |
Ga0181348_10625473 | 3300017784 | Freshwater Lake | VIITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0181348_10831264 | 3300017784 | Freshwater Lake | ASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN |
Ga0181355_10035914 | 3300017785 | Freshwater Lake | SVVEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE |
Ga0181355_11096823 | 3300017785 | Freshwater Lake | LNLTSIVGALADDLHQLAIYNSTQKSQEEKVWQQFSQEFETLKED |
Ga0181355_12886973 | 3300017785 | Freshwater Lake | VEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181355_13026521 | 3300017785 | Freshwater Lake | SAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0169931_106051631 | 3300017788 | Freshwater | SVIEALADDLHQLALYHTNQKSNESMVWQEFSQDLETLKEE |
Ga0181359_10050923 | 3300019784 | Freshwater Lake | IVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181359_10427151 | 3300019784 | Freshwater Lake | NIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETIKENKNVNDIPN |
Ga0181359_12648011 | 3300019784 | Freshwater Lake | ASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0211735_115019522 | 3300020162 | Freshwater | DYFVIATGFILNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0194122_104915521 | 3300021092 | Freshwater Lake | LTSIFEALADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE |
Ga0194130_100356161 | 3300021376 | Freshwater Lake | ADDLHQLALYHSNQKSNESMVWQEFSQDLETLKEE |
Ga0181354_10011041 | 3300022190 | Freshwater Lake | ADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181354_10496343 | 3300022190 | Freshwater Lake | DYLVILSGFFLNLTSIIEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE |
Ga0181354_11265871 | 3300022190 | Freshwater Lake | LAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0181351_10048173 | 3300022407 | Freshwater Lake | VVEALADDLHQLAIYNSTQKSQEEKVWQQFSQDLETLKEE |
Ga0181351_10196203 | 3300022407 | Freshwater Lake | FVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0181351_10737693 | 3300022407 | Freshwater Lake | TSIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKED |
Ga0181351_10961831 | 3300022407 | Freshwater Lake | RKIVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0214917_101060653 | 3300022752 | Freshwater | ALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED |
Ga0214921_100176801 | 3300023174 | Freshwater | VIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0214921_100181631 | 3300023174 | Freshwater | SVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKED |
Ga0214921_101715593 | 3300023174 | Freshwater | EALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0214921_103549803 | 3300023174 | Freshwater | TSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0209651_11399423 | 3300027581 | Freshwater Lake | FVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0208974_10584291 | 3300027608 | Freshwater Lentic | SVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0209357_12041082 | 3300027656 | Freshwater Lake | DALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0208975_10019716 | 3300027659 | Freshwater Lentic | ASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0208975_10109131 | 3300027659 | Freshwater Lentic | ASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0208975_10517381 | 3300027659 | Freshwater Lentic | IASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0209617_100564391 | 3300027720 | Freshwater And Sediment | SAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0209355_11790431 | 3300027744 | Freshwater Lake | EALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE |
Ga0209768_101529203 | 3300027772 | Freshwater Lake | LAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0209500_102548851 | 3300027782 | Freshwater Lake | TSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE |
Ga0209354_100024255 | 3300027808 | Freshwater Lake | TSIVEALADDLHQLAIYNSTQKSQEEKVWQQFSQELETLKEE |
Ga0209990_100214033 | 3300027816 | Freshwater Lake | SGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKEE |
Ga0209550_101413661 | 3300027892 | Freshwater Lake | DALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0209253_109092843 | 3300027900 | Freshwater Lake Sediment | AIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0209191_11428791 | 3300027969 | Freshwater Lake | FVIATGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
(restricted) Ga0247843_100852615 | 3300028569 | Freshwater | VIVSGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE |
(restricted) Ga0247844_11933003 | 3300028571 | Freshwater | GFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE |
(restricted) Ga0247844_12039391 | 3300028571 | Freshwater | ATGFILNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0315291_110447511 | 3300031707 | Sediment | ASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0315909_100133126 | 3300031857 | Freshwater | SGFFLNLTSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0315909_100257441 | 3300031857 | Freshwater | SGFFLNLTSVIEALADDLHQLAIYHSNQKTYETKVWQEFSQDLESLKED |
Ga0315909_100259071 | 3300031857 | Freshwater | TSVIEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED |
Ga0315909_101942033 | 3300031857 | Freshwater | GFFLNLTSVIEALADDLHQLAIYNSTQKSQEEKIWQQFSQDLETLKEE |
Ga0315904_100318651 | 3300031951 | Freshwater | IEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE |
Ga0315901_102816751 | 3300031963 | Freshwater | IEALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED |
Ga0315289_109322231 | 3300032046 | Sediment | IITGFVLNIASAIDALAEDFHQLAVYHSNQKSQEDKVWQKFSQDLETLKEE |
Ga0315902_112353142 | 3300032093 | Freshwater | LISAFEALAEDLHHMSIYYTNQKSQEAKVWQEFAQDLETLKEE |
Ga0334980_0023222_2546_2659 | 3300033816 | Freshwater | ALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED |
Ga0334987_0009499_2_118 | 3300034061 | Freshwater | EALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKED |
Ga0334987_0011220_8192_8314 | 3300034061 | Freshwater | VIEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKED |
Ga0334987_0097633_9_131 | 3300034061 | Freshwater | VIEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKEE |
Ga0334995_0829840_2_133 | 3300034062 | Freshwater | LTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE |
Ga0335027_0010467_7912_8028 | 3300034101 | Freshwater | EALADDLHQLAIYHSNQKTYETKVWQDFAQDLETLKEE |
Ga0335027_0074445_1_120 | 3300034101 | Freshwater | IEALADDLHQLAIYHSTQKSQEEKVWQEFSQDLETLKED |
Ga0335031_0670495_1_150 | 3300034104 | Freshwater | TGFVLNIASAIDALADDLHQLAVYHSNQKSQEDKVWQKFSQDLETLKED |
Ga0335053_0269458_968_1081 | 3300034118 | Freshwater | ALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKED |
Ga0335007_0093476_3_170 | 3300034283 | Freshwater | DYLVIVSGFFLNLTSVIEALADDLHQLAIYHSTQKSQEEKVWQQFSQDLETLKEE |
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