NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F091341

Metagenome / Metatranscriptome Family F091341

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091341
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 49 residues
Representative Sequence VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Number of Associated Samples 101
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil
(42.991 % of family members)
Environment Ontology (ENVO) Unclassified
(56.075 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Subsurface (non-saline)
(50.467 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1Ga0063356_1019748512
2Ga0070664_1009416922
3Ga0099795_105363321
4Ga0099828_114465021
5Ga0099827_112113322
6Ga0111539_107660303
7Ga0111539_122804321
8Ga0111538_122119511
9Ga0105248_107224322
10Ga0114940_103632091
11Ga0105347_10800311
12Ga0105340_12739571
13Ga0105252_100607931
14Ga0105059_10508801
15Ga0105080_10418402
16Ga0105075_10320131
17Ga0105081_10761991
18Ga0105061_10165512
19Ga0126313_111373231
20Ga0131077_110584771
21Ga0126308_106982131
22Ga0151490_13507142
23Ga0137315_10500711
24Ga0137333_10402622
25Ga0137442_11179141
26Ga0137325_10777151
27Ga0137326_10540172
28Ga0137314_11784471
29Ga0137436_10723092
30Ga0137436_11710412
31Ga0137448_11598372
32Ga0137456_10485711
33Ga0137455_10507611
34Ga0137428_12281611
35Ga0137443_11558351
36Ga0137426_10694953
37Ga0137426_12612911
38Ga0137458_10331553
39Ga0137432_11403842
40Ga0137433_11093221
41Ga0137452_11294282
42Ga0137437_10766472
43Ga0137463_11563122
44Ga0137427_102434932
45Ga0137421_11786782
46Ga0137461_10131872
47Ga0137389_110904611
48Ga0137328_10256541
49Ga0137351_10645582
50Ga0137349_10462561
51Ga0137336_10381292
52Ga0137319_10727102
53Ga0137434_10095941
54Ga0137447_10434851
55Ga0137465_10809471
56Ga0157285_103608841
57Ga0157299_103408072
58Ga0157298_101155182
59Ga0137419_105188891
60Ga0164241_106139131
61Ga0164300_105694011
62Ga0164300_110679491
63Ga0075311_11462202
64Ga0157380_122531401
65Ga0180096_10396991
66Ga0180078_10241382
67Ga0180090_10561962
68Ga0180088_10985641
69Ga0180064_10542832
70Ga0180074_10761492
71Ga0180065_10705391
72Ga0180082_10166052
73Ga0180094_11459212
74Ga0180069_11622292
75Ga0157376_109719021
76Ga0167647_10341022
77Ga0173480_110693412
78Ga0180081_10221141
79Ga0132257_1026505092
80Ga0132255_1017249752
81Ga0184626_102667612
82Ga0184623_101852171
83Ga0210379_102118311
84Ga0207690_109548332
85Ga0207708_107261301
86Ga0208291_10198823
87Ga0207698_112033361
88Ga0307312_109586491
89Ga0247827_107616872
90Ga0310886_101350173
91Ga0310886_108610961
92Ga0310900_106026342
93Ga0310903_101214643
94Ga0364928_0154730_439_561
95Ga0364937_063725_271_435
96Ga0364938_007440_1067_1231
97Ga0364945_0059682_471_635
98Ga0364927_0070741_81_203
99Ga0364929_0009653_205_369
100Ga0364929_0139025_461_583
101Ga0364935_0154445_19_132
102Ga0364940_0261112_271_393
103Ga0370495_0172649_204_368
104Ga0364943_0073563_71_193
105Ga0364941_085731_496_609
106Ga0364923_0189651_2_148
107Ga0373917_0082727_393_533
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 40.74%    β-sheet: 0.00%    Coil/Unstructured: 59.26%
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Variant

5101520253035404550VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFGSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Groundwater Sediment
Groundwater
Soil
Groundwater Sediment
Soil
Soil
Vadose Zone Soil
Serpentine Soil
Glacier Forefield Soil
Soil
Untreated Peat Soil
Natural And Restored Wetlands
Corn, Switchgrass And Miscanthus Rhizosphere
Groundwater Sand
Sediment
Arabidopsis Rhizosphere
Corn Rhizosphere
Arabidopsis Thaliana Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Wastewater
Sediment Slurry
43.0%7.5%4.7%4.7%4.7%11.2%2.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0063356_10197485123300004463Arabidopsis Thaliana RhizosphereVSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQQ
Ga0070664_10094169223300005564Corn RhizosphereVSQKQRDGDQPRVLTGIRAGRTADKRVEVVTDVKFFEQR
Ga0099795_1053633213300007788Vadose Zone SoilVSQEQRDREQPWVLAGRQAGHTADEHIEVVTDVEFFEQRMQQPSRQRQTARAFG*
Ga0099828_1144650213300009089Vadose Zone SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0099827_1121133223300009090Vadose Zone SoilVSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQHETGRAFG*
Ga0111539_1076603033300009094Populus RhizosphereVSQEQRDGEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQTSRQDKTACAFGQCP
Ga0111539_1228043213300009094Populus RhizosphereVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQASRQRKTGRAFG*
Ga0111538_1221195113300009156Populus RhizosphereVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0105248_1072243223300009177Switchgrass RhizosphereVSQEQRDGEQRWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAAGALG*
Ga0114940_1036320913300009448GroundwaterVPQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0105347_108003113300009609SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVTDVEFFEQRMQQPSRQRKTARAFG*
Ga0105340_127395713300009610SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAARAFG*
Ga0105252_1006079313300009678SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0105059_105088013300009795Groundwater SandMAQQQRDRDESGVLTRTRAGHTTDEHVEVVADVEFFE*
Ga0105080_104184023300009797Groundwater SandVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTR*
Ga0105075_103201313300009799Groundwater SandVSQEQRDREQPWVLAGRQTGHTADEHVEVVADVEFFEQRVQQPSRQRQTARAFGQST
Ga0105081_107619913300009806Groundwater SandVSQEQRDREQPWVLAGRRAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0105061_101655123300009807Groundwater SandVSQEQRNGEQPWVLAGGQTGHRPDEHVEVVTDVKFFEQGVQQLTRQREAARAIG*
Ga0126313_1113732313300009840Serpentine SoilVSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQREAGCAFGQRPKVVKAPLSPP
Ga0131077_1105847713300009873WastewaterVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0126308_1069821313300010040Serpentine SoilVSQEQRDREQPWVLAGGQAGHTTDEHVEVVADVEFFEQCV*
Ga0151490_135071423300011107SoilVSQERRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE*
Ga0137315_105007113300011395SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFE
Ga0137333_104026223300011413SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFG*
Ga0137442_111791413300011414SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0137325_107771513300011415SoilVSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARPFG*
Ga0137326_105401723300011417SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVHQLTRQREAARAFG*
Ga0137314_117844713300011420SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137436_107230923300011423SoilVSQEQRDREQPWVLAGWQVGHPADEHVEVVAYVEFFEQGMKQAPRQRKTVRAFGQ
Ga0137436_117104123300011423SoilGQAGNTADEDVEVVTDVKFFEQRMQQPSRQRKTGRAFG*
Ga0137448_115983723300011427SoilVSQEQRDREQPWVLAGGQVGHTADKHVEVVTDVKFFEQGVQQLTRQHEAARAFG*
Ga0137456_104857113300011428SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG*
Ga0137455_105076113300011429SoilVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI*
Ga0137428_122816113300011432SoilVSQEQRDGEQPWVLAGGLAGHTADEYVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0137443_115583513300011433SoilVSQEQRDREQPWELAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0137426_106949533300011435SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQR
Ga0137426_126129113300011435SoilQPWVLAGGLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG*
Ga0137458_103315533300011436SoilVSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPAGQRKTARAFG*
Ga0137432_114038423300011439SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQLKTARAFG*
Ga0137433_110932213300011440SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEER
Ga0137452_112942823300011441SoilVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137437_107664723300011442SoilVSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC*
Ga0137463_115631223300011444SoilVSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0137427_1024349323300011445SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFE*
Ga0137421_117867823300012039SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQHLARQR
Ga0137461_101318723300012040SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTR*
Ga0137389_1109046113300012096Vadose Zone SoilVSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137328_102565413300012113SoilVSQEQRDREQPWVLAGGQARHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137351_106455823300012140SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQCMQQPARQREAASAFCQCTKV
Ga0137349_104625613300012160SoilVSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPAR
Ga0137336_103812923300012161SoilVSQEQRDREQPWVLAGGQVGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0137319_107271023300012167SoilVSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQSS*
Ga0137434_100959413300012225SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQ
Ga0137447_104348513300012226SoilVSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0137465_108094713300012231SoilVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0157285_1036088413300012897SoilVSQEQRDGEQPWVLAGGLAGHTPDEHVEVVADVEFFEQRMQQPPRKDKAVGAFG
Ga0157299_1034080723300012899SoilVSQKQRDGDQPRVLTGRRVGRTADKRVEVVTDVKFFEQHLEQRTTP
Ga0157298_1011551823300012913SoilVSQKQRDGEQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFD*
Ga0137419_1051888913300012925Vadose Zone SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLT
Ga0164241_1061391313300012943SoilVSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0164300_1056940113300012951SoilVSQEQCDREQPWVLAGPQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0164300_1106794913300012951SoilVSQKQRDGDQPRVLTGGRVGRTADKRVEVVTDVKF
Ga0075311_114622023300014259Natural And Restored WetlandsVSQEQRNGEQPWVLAGGQTGHRPDEHVEVVADVEFFEQRVQQPGRPRETVRALG*
Ga0157380_1225314013300014326Switchgrass RhizosphereVSQEQRDREQPWVLAGGLADHTADEHVEVVADVEFFEQRMQ
Ga0180096_103969913300014862SoilHDREQPWELAGREAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0180078_102413823300014865SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPPRKDKAAGAFG*
Ga0180090_105619623300014866SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRPREAARAFG*
Ga0180088_109856413300014868SoilEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0180064_105428323300014876SoilVSQEQRDCEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQPSRQRKTGRAFG*
Ga0180074_107614923300014877SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG*
Ga0180065_107053913300014878SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFG*
Ga0180082_101660523300014880SoilVSQEQRDREQPWVLAGRLAGHRADEHVEVVADVEFFEQRVQQPSRQRKTARAFG*
Ga0180094_114592123300014881SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG*
Ga0180069_116222923300014882SoilVSQEQRDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG*
Ga0157376_1097190213300014969Miscanthus RhizosphereVSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQHKAARAFGKCTKVIEAA
Ga0167647_103410223300015199Glacier Forefield SoilVSQEQRDREQPWVLAGRQMGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG*
Ga0173480_1106934123300015200SoilQPWVLAGRLAGHTADEHVEVVADVEFFEHRMQQPSRQRKTGRAFG*
Ga0180081_102211413300015253SoilVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAASAFG*
Ga0132257_10265050923300015373Arabidopsis RhizosphereVSQKQRDGDQPRVLTGRRAGGTADKRVEVVTDVKFFEQRLEQRATP
Ga0132255_10172497523300015374Arabidopsis RhizosphereAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG*
Ga0184626_1026676123300018053Groundwater SedimentVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG
Ga0184623_1018521713300018056Groundwater SedimentVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQ
Ga0210379_1021183113300021081Groundwater SedimentVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCV
Ga0207690_1095483323300025932Corn RhizosphereVSQEQRDGEQPWVLAGGLAGHTADEDVEVVADVELFEQGMQQPSRQHKAV
Ga0207708_1072613013300026075Corn, Switchgrass And Miscanthus RhizosphereVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Ga0208291_101988233300026111Natural And Restored WetlandsVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFF
Ga0207698_1120333613300026142Corn RhizosphereVSQEQRDGEQPWVLAATQAGHTADERVEVVADVEFFEQR
Ga0307312_1095864913300028828SoilVSQEQGDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG
Ga0247827_1076168723300028889SoilVSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQ
Ga0310886_1013501733300031562SoilVSHEERDDEQPWVLAARCVHHRADELVEVVADVKFLEQGVQQRTR
Ga0310886_1086109613300031562SoilVSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFF
Ga0310900_1060263423300031908SoilVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKT
Ga0310903_1012146433300032000SoilVSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQ
Ga0364928_0154730_439_5613300033813SedimentVSQEQGDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQ
Ga0364937_063725_271_4353300034113SedimentVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQRKAARAFG
Ga0364938_007440_1067_12313300034114SedimentVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARTFG
Ga0364945_0059682_471_6353300034115SedimentVSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREATRAFG
Ga0364927_0070741_81_2033300034148SedimentVSQEQRDREQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364929_0009653_205_3693300034149SedimentVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC
Ga0364929_0139025_461_5833300034149SedimentVSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364935_0154445_19_1323300034151SedimentLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG
Ga0364940_0261112_271_3933300034164SedimentVSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0370495_0172649_204_3683300034257Untreated Peat SoilVSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGPRKTARALG
Ga0364943_0073563_71_1933300034354SedimentVSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI
Ga0364941_085731_496_6093300034417SedimentVSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE
Ga0364923_0189651_2_1483300034690SedimentVSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREA
Ga0373917_0082727_393_5333300034692Sediment SlurryVSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQR


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