Basic Information | |
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Family ID | F091341 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 107 |
Average Sequence Length | 49 residues |
Representative Sequence | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG |
Number of Associated Samples | 101 |
Number of Associated Scaffolds | 107 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 0.00 % |
% of genes near scaffold ends (potentially truncated) | 0.00 % |
% of genes from short scaffolds (< 2000 bps) | 0.00 % |
Associated GOLD sequencing projects | 101 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (100.000 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil (42.991 % of family members) |
Environment Ontology (ENVO) | Unclassified (56.075 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Subsurface (non-saline) (50.467 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 40.74% β-sheet: 0.00% Coil/Unstructured: 59.26% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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Groundwater Sediment Groundwater Soil Groundwater Sediment Soil Soil Vadose Zone Soil Serpentine Soil Glacier Forefield Soil Soil Untreated Peat Soil Natural And Restored Wetlands Corn, Switchgrass And Miscanthus Rhizosphere Groundwater Sand Sediment Arabidopsis Rhizosphere Corn Rhizosphere Arabidopsis Thaliana Rhizosphere Populus Rhizosphere Switchgrass Rhizosphere Miscanthus Rhizosphere Switchgrass Rhizosphere Corn Rhizosphere Wastewater Sediment Slurry |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
Ga0063356_1019748512 | 3300004463 | Arabidopsis Thaliana Rhizosphere | VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQQ |
Ga0070664_1009416922 | 3300005564 | Corn Rhizosphere | VSQKQRDGDQPRVLTGIRAGRTADKRVEVVTDVKFFEQR |
Ga0099795_105363321 | 3300007788 | Vadose Zone Soil | VSQEQRDREQPWVLAGRQAGHTADEHIEVVTDVEFFEQRMQQPSRQRQTARAFG* |
Ga0099828_114465021 | 3300009089 | Vadose Zone Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0099827_112113322 | 3300009090 | Vadose Zone Soil | VSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQHETGRAFG* |
Ga0111539_107660303 | 3300009094 | Populus Rhizosphere | VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQTSRQDKTACAFGQCP |
Ga0111539_122804321 | 3300009094 | Populus Rhizosphere | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQASRQRKTGRAFG* |
Ga0111538_122119511 | 3300009156 | Populus Rhizosphere | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0105248_107224322 | 3300009177 | Switchgrass Rhizosphere | VSQEQRDGEQRWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAAGALG* |
Ga0114940_103632091 | 3300009448 | Groundwater | VPQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0105347_10800311 | 3300009609 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVTDVEFFEQRMQQPSRQRKTARAFG* |
Ga0105340_12739571 | 3300009610 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQHKAARAFG* |
Ga0105252_100607931 | 3300009678 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0105059_10508801 | 3300009795 | Groundwater Sand | MAQQQRDRDESGVLTRTRAGHTTDEHVEVVADVEFFE* |
Ga0105080_10418402 | 3300009797 | Groundwater Sand | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTR* |
Ga0105075_10320131 | 3300009799 | Groundwater Sand | VSQEQRDREQPWVLAGRQTGHTADEHVEVVADVEFFEQRVQQPSRQRQTARAFGQST |
Ga0105081_10761991 | 3300009806 | Groundwater Sand | VSQEQRDREQPWVLAGRRAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0105061_10165512 | 3300009807 | Groundwater Sand | VSQEQRNGEQPWVLAGGQTGHRPDEHVEVVTDVKFFEQGVQQLTRQREAARAIG* |
Ga0126313_111373231 | 3300009840 | Serpentine Soil | VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQREAGCAFGQRPKVVKAPLSPP |
Ga0131077_110584771 | 3300009873 | Wastewater | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0126308_106982131 | 3300010040 | Serpentine Soil | VSQEQRDREQPWVLAGGQAGHTTDEHVEVVADVEFFEQCV* |
Ga0151490_13507142 | 3300011107 | Soil | VSQERRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE* |
Ga0137315_10500711 | 3300011395 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFE |
Ga0137333_10402622 | 3300011413 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFG* |
Ga0137442_11179141 | 3300011414 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG* |
Ga0137325_10777151 | 3300011415 | Soil | VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARPFG* |
Ga0137326_10540172 | 3300011417 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVHQLTRQREAARAFG* |
Ga0137314_11784471 | 3300011420 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC* |
Ga0137436_10723092 | 3300011423 | Soil | VSQEQRDREQPWVLAGWQVGHPADEHVEVVAYVEFFEQGMKQAPRQRKTVRAFGQ |
Ga0137436_11710412 | 3300011423 | Soil | GQAGNTADEDVEVVTDVKFFEQRMQQPSRQRKTGRAFG* |
Ga0137448_11598372 | 3300011427 | Soil | VSQEQRDREQPWVLAGGQVGHTADKHVEVVTDVKFFEQGVQQLTRQHEAARAFG* |
Ga0137456_10485711 | 3300011428 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG* |
Ga0137455_10507611 | 3300011429 | Soil | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI* |
Ga0137428_12281611 | 3300011432 | Soil | VSQEQRDGEQPWVLAGGLAGHTADEYVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0137443_11558351 | 3300011433 | Soil | VSQEQRDREQPWELAGRQAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0137426_10694953 | 3300011435 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQR |
Ga0137426_12612911 | 3300011435 | Soil | QPWVLAGGLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG* |
Ga0137458_10331553 | 3300011436 | Soil | VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQPAGQRKTARAFG* |
Ga0137432_11403842 | 3300011439 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQLKTARAFG* |
Ga0137433_11093221 | 3300011440 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEER |
Ga0137452_11294282 | 3300011441 | Soil | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC* |
Ga0137437_10766472 | 3300011442 | Soil | VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC* |
Ga0137463_11563122 | 3300011444 | Soil | VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG* |
Ga0137427_102434932 | 3300011445 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFE* |
Ga0137421_11786782 | 3300012039 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQHLARQR |
Ga0137461_10131872 | 3300012040 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTR* |
Ga0137389_110904611 | 3300012096 | Vadose Zone Soil | VSQEQRDREQPWVLAGGQAGHAADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0137328_10256541 | 3300012113 | Soil | VSQEQRDREQPWVLAGGQARHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0137351_10645582 | 3300012140 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQCMQQPARQREAASAFCQCTKV |
Ga0137349_10462561 | 3300012160 | Soil | VSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPAR |
Ga0137336_10381292 | 3300012161 | Soil | VSQEQRDREQPWVLAGGQVGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0137319_10727102 | 3300012167 | Soil | VSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQSS* |
Ga0137434_10095941 | 3300012225 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQ |
Ga0137447_10434851 | 3300012226 | Soil | VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0137465_10809471 | 3300012231 | Soil | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG* |
Ga0157285_103608841 | 3300012897 | Soil | VSQEQRDGEQPWVLAGGLAGHTPDEHVEVVADVEFFEQRMQQPPRKDKAVGAFG |
Ga0157299_103408072 | 3300012899 | Soil | VSQKQRDGDQPRVLTGRRVGRTADKRVEVVTDVKFFEQHLEQRTTP |
Ga0157298_101155182 | 3300012913 | Soil | VSQKQRDGEQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFD* |
Ga0137419_105188891 | 3300012925 | Vadose Zone Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLT |
Ga0164241_106139131 | 3300012943 | Soil | VSQEQRDGEQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0164300_105694011 | 3300012951 | Soil | VSQEQCDREQPWVLAGPQAGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0164300_110679491 | 3300012951 | Soil | VSQKQRDGDQPRVLTGGRVGRTADKRVEVVTDVKF |
Ga0075311_11462202 | 3300014259 | Natural And Restored Wetlands | VSQEQRNGEQPWVLAGGQTGHRPDEHVEVVADVEFFEQRVQQPGRPRETVRALG* |
Ga0157380_122531401 | 3300014326 | Switchgrass Rhizosphere | VSQEQRDREQPWVLAGGLADHTADEHVEVVADVEFFEQRMQ |
Ga0180096_10396991 | 3300014862 | Soil | HDREQPWELAGREAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0180078_10241382 | 3300014865 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPPRKDKAAGAFG* |
Ga0180090_10561962 | 3300014866 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRPREAARAFG* |
Ga0180088_10985641 | 3300014868 | Soil | EQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0180064_10542832 | 3300014876 | Soil | VSQEQRDCEQPWVLAGGLAGHTADEHVEVVADMEFFEQRMQQPSRQRKTGRAFG* |
Ga0180074_10761492 | 3300014877 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRLQQPSRQRKTARAFG* |
Ga0180065_10705391 | 3300014878 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTGRAFG* |
Ga0180082_10166052 | 3300014880 | Soil | VSQEQRDREQPWVLAGRLAGHRADEHVEVVADVEFFEQRVQQPSRQRKTARAFG* |
Ga0180094_11459212 | 3300014881 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG* |
Ga0180069_11622292 | 3300014882 | Soil | VSQEQRDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQPTRQREAARAFG* |
Ga0157376_109719021 | 3300014969 | Miscanthus Rhizosphere | VSQEQRDGQQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQHKAARAFGKCTKVIEAA |
Ga0167647_10341022 | 3300015199 | Glacier Forefield Soil | VSQEQRDREQPWVLAGRQMGHTADEHVEVVADVEFFEQRVQQPSGQRKTARAFG* |
Ga0173480_110693412 | 3300015200 | Soil | QPWVLAGRLAGHTADEHVEVVADVEFFEHRMQQPSRQRKTGRAFG* |
Ga0180081_10221141 | 3300015253 | Soil | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAASAFG* |
Ga0132257_1026505092 | 3300015373 | Arabidopsis Rhizosphere | VSQKQRDGDQPRVLTGRRAGGTADKRVEVVTDVKFFEQRLEQRATP |
Ga0132255_1017249752 | 3300015374 | Arabidopsis Rhizosphere | AGHTADEHVEVVADVEFFEQRMQQPSRQRKTGRAFG* |
Ga0184626_102667612 | 3300018053 | Groundwater Sediment | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG |
Ga0184623_101852171 | 3300018056 | Groundwater Sediment | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQ |
Ga0210379_102118311 | 3300021081 | Groundwater Sediment | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCV |
Ga0207690_109548332 | 3300025932 | Corn Rhizosphere | VSQEQRDGEQPWVLAGGLAGHTADEDVEVVADVELFEQGMQQPSRQHKAV |
Ga0207708_107261301 | 3300026075 | Corn, Switchgrass And Miscanthus Rhizosphere | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG |
Ga0208291_10198823 | 3300026111 | Natural And Restored Wetlands | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFF |
Ga0207698_112033361 | 3300026142 | Corn Rhizosphere | VSQEQRDGEQPWVLAATQAGHTADERVEVVADVEFFEQR |
Ga0307312_109586491 | 3300028828 | Soil | VSQEQGDREQPWVLAGGQVGHTADEHVEVVTDVKFFEQGVQQLTRQREAARAFG |
Ga0247827_107616872 | 3300028889 | Soil | VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQGVQ |
Ga0310886_101350173 | 3300031562 | Soil | VSHEERDDEQPWVLAARCVHHRADELVEVVADVKFLEQGVQQRTR |
Ga0310886_108610961 | 3300031562 | Soil | VSQEQRDREQPWVLAGRLAGHTADEHVEVVADVEFF |
Ga0310900_106026342 | 3300031908 | Soil | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQRKT |
Ga0310903_101214643 | 3300032000 | Soil | VSHEERDDEQPWVLAGRYVRHRADEPVEVVADVEFLEQ |
Ga0364928_0154730_439_561 | 3300033813 | Sediment | VSQEQGDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQ |
Ga0364937_063725_271_435 | 3300034113 | Sediment | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQRKAARAFG |
Ga0364938_007440_1067_1231 | 3300034114 | Sediment | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREAARTFG |
Ga0364945_0059682_471_635 | 3300034115 | Sediment | VSQKQRDGEQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREATRAFG |
Ga0364927_0070741_81_203 | 3300034148 | Sediment | VSQEQRDREQPWVLAGGQAGHTADEHVEVVADVQFVEQRI |
Ga0364929_0009653_205_369 | 3300034149 | Sediment | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFEQCVQQPARQREAARAFC |
Ga0364929_0139025_461_583 | 3300034149 | Sediment | VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI |
Ga0364935_0154445_19_132 | 3300034151 | Sediment | LAGHTADEHVEVVADVEFFEQRVQQPSRQRKTARAFG |
Ga0364940_0261112_271_393 | 3300034164 | Sediment | VSQKQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI |
Ga0370495_0172649_204_368 | 3300034257 | Untreated Peat Soil | VSQEQRDREQPWVLAGRQAGHTADEHVEVVADVEFFEQRVQQPSGPRKTARALG |
Ga0364943_0073563_71_193 | 3300034354 | Sediment | VSQEQRDGEQPWVLAGGQAGHTADEHVEVVADVQFVEQRI |
Ga0364941_085731_496_609 | 3300034417 | Sediment | VSQQQRDGEQPWVLAGGQAGHTADEHVEVVADVEFFE |
Ga0364923_0189651_2_148 | 3300034690 | Sediment | VSQEQRDREQPWVLAGGQAGHTADEHVEVVTDVKFFEQGVQQLTRQREA |
Ga0373917_0082727_393_533 | 3300034692 | Sediment Slurry | VSQEQRDREQPWVLAGGLAGHTADEHVEVVADVEFFEQRMQQPSRQR |
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