Metagenome / Metatranscriptome Family F091254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091254
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	47 residues
Representative Sequence	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Number of Associated Samples	57
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	2.80 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	89.72 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (89.720 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (95.327 % of family members)
Environment Ontology (ENVO)	Unclassified (95.327 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (99.065 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0102957_11942631 2Ga0182056_13919891 3Ga0182074_14077781 4Ga0182079_11712952 5Ga0182070_14285352 6Ga0182082_12286251 7Ga0181565_103065171 8Ga0181565_107654552 9Ga0181565_109191051 10Ga0181565_110300941 11Ga0181584_106315522 12Ga0181584_107528622 13Ga0181580_108655172 14Ga0181571_105527031 15Ga0181571_107685311 16Ga0181571_107768462 17Ga0181582_109111621 18Ga0181589_104434091 19Ga0181589_106133221 20Ga0181589_109557422 21Ga0181590_106394912 22Ga0181587_108402252 23Ga0181585_100742493 24Ga0181585_102500852 25Ga0181576_107067002 26Ga0181576_107550612 27Ga0181569_107228351 28Ga0181569_109906461 29Ga0181572_103151321 30Ga0181572_105763741 31Ga0181572_105945271 32Ga0181572_108482502 33Ga0181567_106352421 34Ga0181567_110615771 35Ga0181563_104134621 36Ga0181592_100324571 37Ga0181592_106470931 38Ga0181592_109113672 39Ga0181591_104903132 40Ga0181591_107658181 41Ga0181591_110378122 42Ga0181566_100335464 43Ga0181566_101033301 44Ga0181566_102073831 45Ga0181566_102864652 46Ga0181566_109561131 47Ga0181566_112175281 48Ga0181568_112876211 49Ga0182066_11565922 50Ga0182061_11379951 51Ga0182059_11838002 52Ga0182067_10923712 53Ga0182081_11937262 54Ga0182068_12633162 55Ga0181596_104184191 56Ga0181578_101970921 57Ga0181578_103126822 58Ga0181578_103293502 59Ga0181597_103706192 60Ga0181570_101394351 61Ga0181570_102177151 62Ga0181570_102531672 63Ga0181570_103318181 64Ga0181570_105039192 65Ga0213858_101560511 66Ga0213858_103209691 67Ga0213859_102087361 68Ga0213860_101071631 69Ga0255779_12696551 70Ga0255769_100254354 71Ga0255781_103359082 72Ga0255754_101278632 73Ga0255764_102338421 74Ga0255778_101658631 75Ga0255778_102220492 76Ga0255778_103301901 77Ga0255774_102057031 78Ga0255774_103896471 79Ga0255774_104292871 80Ga0255774_104974531 81Ga0255782_100189764 82Ga0255782_102418032 83Ga0255782_104983041 84Ga0255784_100306044 85Ga0255784_102291342 86Ga0255784_103260361 87Ga0255784_103373941 88Ga0255743_102833741 89Ga0255743_103260451 90Ga0255751_102907372 91Ga0255751_103132351 92Ga0255757_101495121 93Ga0255762_100238954 94Ga0255762_104161862 95Ga0255761_102066202 96Ga0255766_100199135 97Ga0255766_104058881 98Ga0255776_100423264 99Ga0255777_101565852 100Ga0255777_102054281 101Ga0255777_102652032 102Ga0255777_102711551 103Ga0255772_102753052 104Ga0255759_101941762 105Ga0255759_105742481 106Ga0255768_103741201 107Ga0255768_104426231
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0102957_11942631 2Ga0182056_13919891 3Ga0181565_109191051 4Ga0181566_102864652 5Ga0182059_11838002 6Ga0255784_100306044
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62. 1Ga0102957_11942631 2Ga0182056_13919891 3Ga0181565_109191051 4Ga0181566_102864652 5Ga0182059_11838002 6Ga0255784_100306044
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 83.67% β-sheet: 0.00% Coil/Unstructured: 16.33%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00533	BRCT	64.49
PF03120	DNA_ligase_OB	17.76
PF14520	HHH_5	14.02
PF00701	DHDPS	1.87
PF06804	Lipoprotein_18	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0272	NAD-dependent DNA ligase	Replication, recombination and repair [L]	17.76
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	3.74
COG3317	Outer membrane beta-barrel protein assembly factor BamC	Cell wall/membrane/envelope biogenesis [M]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	10.28 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	10.28 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.28 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	10.28 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	10.28 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	2.80 %
Unclassified	root	N/A	89.72 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	2.80 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %
Unclassified	root	N/A	89.72 %

Name	Rank	Taxonomy	Distribution
Candidatus Thioglobus autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	0.93 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %
Unclassified	root	N/A	89.72 %
unclassified Candidatus Thioglobus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus	1.87 %

Name	Rank	Taxonomy	Distribution
Candidatus Thioglobus autotrophicus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → Candidatus Thioglobus autotrophicus	0.93 %
Candidatus Thioglobus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → unclassified Candidatus Thioglobus → Candidatus Thioglobus sp.	1.87 %
endosymbiont of Bathymodiolus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → endosymbiont of Bathymodiolus sp.	0.93 %
Unclassified	root	N/A	89.72 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300009027\|Ga0102957_1194263	Not Available	727	Open in IMG/M
3300016729\|Ga0182056_1391989	Not Available	887	Open in IMG/M
3300016735\|Ga0182074_1407778	Not Available	810	Open in IMG/M
3300016741\|Ga0182079_1171295	Not Available	515	Open in IMG/M
3300016758\|Ga0182070_1428535	Not Available	1216	Open in IMG/M
3300016771\|Ga0182082_1228625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	4003	Open in IMG/M
3300017818\|Ga0181565_10306517	Not Available	1065	Open in IMG/M
3300017818\|Ga0181565_10765455	Not Available	609	Open in IMG/M
3300017818\|Ga0181565_10919105	Not Available	545	Open in IMG/M
3300017818\|Ga0181565_11030094	Not Available	508	Open in IMG/M

Showing 1 to 10 of 107 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	99.07%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.93%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	3.74%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	95.33%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	95.33%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	3.74%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	95.33%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.74%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300016729	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101402AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016735	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071406BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016741	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071410CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016758	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071403BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M

Showing 1 to 10 of 57 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0102957_11942631	3300009027	Pond Water	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQ
Ga0182056_13919891	3300016729	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFY
Ga0182074_14077781	3300016735	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFID
Ga0182079_11712952	3300016741	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDY
Ga0182070_14285352	3300016758	Salt Marsh	VKASDLINEQKKFLTEKLRIDFNDLASECEKILSKKIDSSQIDKVLSIFI
Ga0182082_12286251	3300016771	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKALSIFIDYHPFTNLV
Ga0181565_103065171	3300017818	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFI
Ga0181565_107654552	3300017818	Salt Marsh	MTANDLINEQKKFLTEKLRVDFNELSKECEKILSKEKDSI
Ga0181565_109191051	3300017818	Salt Marsh	MKASDLINEQKKFLTEKLRIDFDDLALECEKILSKKNDPNLIDKTLSIFIDYHPFTNLVY
Ga0181565_110300941	3300017818	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSI
Ga0181584_106315522	3300017949	Salt Marsh	MKASDLINEQKKFLTEKLRVDFNDLASECEKILSKKIDSIQ
Ga0181584_107528622	3300017949	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQID
Ga0181580_108655172	3300017956	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDK
Ga0181571_105527031	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKNNDPN
Ga0181571_107685311	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFNELSKECEKILSKNNDLNLIDKTLSIFIDYHPFTNL
Ga0181571_107768462	3300017957	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKK
Ga0181582_109111621	3300017958	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFDDLASECEKILSKKK
Ga0181589_104434091	3300017964	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKK
Ga0181589_106133221	3300017964	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181589_109557422	3300017964	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIFI
Ga0181590_106394912	3300017967	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0181587_108402252	3300017968	Salt Marsh	MRATDLINEQKKFLTEKLRVDFYELSKECEKILSKEKDSSQID
Ga0181585_100742493	3300017969	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQ
Ga0181585_102500852	3300017969	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECKKILSKKKDLTQID
Ga0181576_107067002	3300017985	Salt Marsh	MKASDLINEQKKFLTEKLRVDFHDLASECEKILSKKIDSSQIDKVLSIFIDYHPFT
Ga0181576_107550612	3300017985	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDYHP
Ga0181569_107228351	3300017986	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSSQIDKVLSIFIDYHPFTNL
Ga0181569_109906461	3300017986	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDALASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181572_103151321	3300018049	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDGLASECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0181572_105763741	3300018049	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKI
Ga0181572_105945271	3300018049	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFIDYHPFTNLV
Ga0181572_108482502	3300018049	Salt Marsh	MKASDLINEQKKFLTEKLRVDFYDLASECEKILSK
Ga0181567_106352421	3300018418	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDS
Ga0181567_110615771	3300018418	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLS
Ga0181563_104134621	3300018420	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDELSKECEKILSKKIDSSQIDKVLSIFIDYHPF
Ga0181592_100324571	3300018421	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPF
Ga0181592_106470931	3300018421	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKNDSSQI
Ga0181592_109113672	3300018421	Salt Marsh	MKASDLINQQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQID
Ga0181591_104903132	3300018424	Salt Marsh	MKASDLINEQKKFLTEKLRVDFYDLASECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0181591_107658181	3300018424	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKID
Ga0181591_110378122	3300018424	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSS
Ga0181566_100335464	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSIQI
Ga0181566_101033301	3300018426	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDYHPFTNLVY
Ga0181566_102073831	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFI
Ga0181566_102864652	3300018426	Salt Marsh	MRASDLINQQKKFLTEKLRVDFYELSKECEKILSKN
Ga0181566_109561131	3300018426	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSGQIDKVLSIFIDYH
Ga0181566_112175281	3300018426	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0181568_112876211	3300018428	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKK
Ga0182066_11565922	3300019262	Salt Marsh	MRASDLIDEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDYHP
Ga0182061_11379951	3300019266	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKV
Ga0182059_11838002	3300019272	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFNELSKECQKILSKNNDSNQID
Ga0182067_10923712	3300019276	Salt Marsh	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0182081_11937262	3300019277	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSIQIDKVLSIFIDY
Ga0182068_12633162	3300019280	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQIDKVLSIFID
Ga0181596_104184191	3300020177	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKYDS
Ga0181578_101970921	3300020189	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDY
Ga0181578_103126822	3300020189	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQI
Ga0181578_103293502	3300020189	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQ
Ga0181597_103706192	3300020194	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKY
Ga0181570_101394351	3300020207	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKNDSSQIDKVLSIFIDYHPF
Ga0181570_102177151	3300020207	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVL
Ga0181570_102531672	3300020207	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSKEKDSIQIDKVLSIFIDY
Ga0181570_103318181	3300020207	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDSTQ
Ga0181570_105039192	3300020207	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVL
Ga0213858_101560511	3300021356	Seawater	MRASDLINEQKKFLTEKLRVDFDNLASECEKILLKKNDSSQID
Ga0213858_103209691	3300021356	Seawater	MRASDLINEQKKFLTEKLRIDFDDLASECEKILSKKIDSSQIDNVLSIFI
Ga0213859_102087361	3300021364	Seawater	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSK
Ga0213860_101071631	3300021368	Seawater	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSIF
Ga0255779_12696551	3300022922	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQ
Ga0255769_100254354	3300022927	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLSKECEKILSKKIDSSQID
Ga0255781_103359082	3300022934	Salt Marsh	MRATDLISEQKKFLTEKLRVDFADLASECKKILSKKKDLTQ
Ga0255754_101278632	3300022939	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQID
Ga0255764_102338421	3300023081	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSSQIDKVLSIFIDYHPFTNL
Ga0255778_101658631	3300023084	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSQKKYSIQIDKVLSIFIDYHPFTNLV
Ga0255778_102220492	3300023084	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFNELSKECQKILSKNNDSNQIDKVLS
Ga0255778_103301901	3300023084	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDALASECKKILSKKKDLTQIDKVLS
Ga0255774_102057031	3300023087	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDRVLSIFIDYHP
Ga0255774_103896471	3300023087	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKEKDPIQ
Ga0255774_104292871	3300023087	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDELASECEKILSKKKDSI
Ga0255774_104974531	3300023087	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDLTQIDKVLSIFIDYHPFTN
Ga0255782_100189764	3300023105	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSSQIDKVLSI
Ga0255782_102418032	3300023105	Salt Marsh	MRASDLINEQKKFLTEKLRVDFNDLSKECEKILSKEK
Ga0255782_104983041	3300023105	Salt Marsh	MKASDLINEQKEFLTEKLRVDFNDLASECEKILSKKK
Ga0255784_100306044	3300023108	Salt Marsh	MRATDLINEQKKFLTEKLRVDFHELSKECEKILSQKKDSIQIDKVLSIFIDYHPFANL
Ga0255784_102291342	3300023108	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSIFIDYHPFTNLVYLID
Ga0255784_103260361	3300023108	Salt Marsh	MRASDLINEQKKFLTEKLRVDFAELSKECEKILSKNNDSNLIDKVLSI
Ga0255784_103373941	3300023108	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDLTQIDKVLSIFI
Ga0255743_102833741	3300023110	Salt Marsh	MRASDLINEQKKFLTEKLRVDFAELSKECEKILSKNNDSNLIDKVLSIFIDYHPFTNL
Ga0255743_103260451	3300023110	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLSKECEKILSQ
Ga0255751_102907372	3300023116	Salt Marsh	MRASDLINEQKKFLTEKLRVDFYELSKECEKILSKNSDSNLIDKTLSIFIDYHPFTNLV
Ga0255751_103132351	3300023116	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQIDKVLSIFIDYHPFTN
Ga0255757_101495121	3300023117	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPFANLVY
Ga0255762_100238954	3300023119	Salt Marsh	MRVSDLINEQKKFLTEKLRVDFDDLASECEKILLRK
Ga0255762_104161862	3300023119	Salt Marsh	MRASDLIKEQKKFLTEKLRVDFDDLASECEKILLKKIDSSEIDKVLSIFID
Ga0255761_102066202	3300023170	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILLKKND
Ga0255766_100199135	3300023172	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDSIQIDKVLSIFIDYHPFA
Ga0255766_104058881	3300023172	Salt Marsh	MRASDLINEQKNFLTEKLRIDFGDLASECGKILSQKKDSIQIDKVLSIFIDYH
Ga0255776_100423264	3300023173	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILLRKYDSSQIDKVLSIFIDYHPFTNLVY
Ga0255777_101565852	3300023175	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKI
Ga0255777_102054281	3300023175	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLASECEKILSKEKDS
Ga0255777_102652032	3300023175	Salt Marsh	MKASDLINEQKEFLTEKLRVDFNDLASECEKILSKKKDSIQIDKVLSIF
Ga0255777_102711551	3300023175	Salt Marsh	MKASYLINEQKKFLTEKLRVDFDDLASECEKILSIKID
Ga0255772_102753052	3300023176	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKKDPIQI
Ga0255759_101941762	3300023178	Salt Marsh	MRATDLINEQKKFLTEKLRVDFDDLASECEKILSQKKDSIQIDKVLSIFIDY
Ga0255759_105742481	3300023178	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDDLASECEKILSKKIDSGQIDKVLSIF
Ga0255768_103741201	3300023180	Salt Marsh	MKASDLINEQKKFLTEKLRVDFDNLASECEKILSKEKDSIQ
Ga0255768_104426231	3300023180	Salt Marsh	MRASDLINEQKKFLTEKLRVDFDDLATECEKILSKKIDSS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences