Metagenome / Metatranscriptome Family F091057

Overview

Basic Information

• Family ID: F091057
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 42 residues
• Representative Sequence: VRPEGAYHQWRKDPSRELSIALVADERFGRATGWIEAS
• Number of Associated Samples: 106
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 6.48 %
• % of genes near scaffold ends (potentially truncated): 94.44 %
• % of genes from short scaffolds (< 2000 bps): 85.19 %
• Associated GOLD sequencing projects: 103
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (100.000 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.889 % of family members)
• Environment Ontology (ENVO): Unclassified (25.000 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (53.704 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 40.91%
  β-sheet: 0.00%
  Coil/Unstructured: 59.09%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00078	RVT_1	17.59
PF08388	GIIM	16.67
PF02371	Transposase_20	3.70
PF13340	DUF4096	0.93
PF06210	DUF1003	0.93
PF13561	adh_short_C2	0.93
PF00571	CBS	0.93
PF03061	4HBT	0.93
PF13534	Fer4_17	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	3.70
COG4420	Uncharacterized membrane protein	Function unknown [S]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	90.74 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Unclassified	root	N/A	0.00 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	90.74 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Unclassified	root	N/A	0.00 %

Level 6

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	87.96 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.85 %
Unclassified	root	N/A	0.00 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	72.22 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.85 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Unclassified	root	N/A	0.00 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	71.30 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.85 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Unclassified	root	N/A	0.00 %

Level 9

Name	Rank	Taxonomy	Distribution
Bradyrhizobium barranii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii	1.85 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	12.96 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.78 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Unclassified	root	N/A	0.00 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	11.11 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.85 %

Level 10

Name	Rank	Taxonomy	Distribution
Bradyrhizobium barranii subsp. barranii	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	1.85 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	12.96 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.78 %
Bradyrhizobium sp. NAS80.1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. NAS80.1	11.11 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Mesorhizobium sp. STM 4661	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. STM 4661	1.85 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Unclassified	root	N/A	0.00 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001104|JGI11756J13266_100688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	634
3300001147|JGI11862J13335_100984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	698
3300001305|C688J14111_10053890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. barranii	1215
3300001361|A30PFW6_1018174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1509
3300001661|JGI12053J15887_10343135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	723
3300001686|C688J18823_10105209	All Organisms → cellular organisms → Bacteria	1960
3300002231|KVRMV2_100655513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	696
3300002568|C688J35102_120869940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1919
3300003218|JGI26339J46600_10078710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	834
3300003352|JGI26345J50200_1005892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1195

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.33%
Host-Associated	Host-Associated	16.67%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	17.59%
Plants	Host-Associated → Plants	16.67%
Terrestrial	Environmental → Terrestrial	65.74%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Marine	Environmental → Aquatic → Marine	0.93%
Peat	Environmental → Terrestrial → Peat	2.78%
Peat Moss	Host-Associated → Plants → Peat Moss	1.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.48%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.93%
Roots	Host-Associated → Plants → Roots	3.70%
Sediment	Environmental → Aquatic → Sediment	4.63%
Soil	Environmental → Terrestrial → Soil	62.04%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%

Type

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.70%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	1.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.41%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%

Subtype

Habitat	Taxonomy	Distribution
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.41%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	3.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.85%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.85%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.93%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.56%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.63%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.78%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	1.85%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	3.70%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	1.85%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.85%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	4.63%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.93%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001104	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O3	Environmental
3300001147	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_O1	Environmental
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental
3300001361	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A30-PF)- 6 month illumina	Environmental
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental
3300002231	Marine sediment microbial communities from Santorini caldera mats, Greece - red mat	Environmental
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11756J13266_1006881	3300001104	Forest Soil	FAVRPDGADHQWRRVPPXELSIALVADERFGRVTDWIEAS*
JGI11862J13335_1009841	3300001147	Forest Soil	FAVRPDGADHQWRRVPPRELSIALVADERFGRVTDWIEAS*
C688J14111_100538901	3300001305	Soil	PDGAFHQWRKVPPRELSIALVVDERFGWVTGWIEAS*
A30PFW6_10181742	3300001361	Permafrost	FAVRPEGAFHQWREVPPRELSIALVADERFGRVTDWTEAS*
JGI12053J15887_103431352	3300001661	Forest Soil	SLICFAFLIIAVRPDGADHQWRRVPPRELSIALVADERFGRVTDWIEAS*
C688J18823_101052091	3300001686	Soil	SSQVLRFAVRPEGAFHQWREVPPGELSIALVADERFGWVTNRIEAS*
KVRMV2_1006555132	3300002231	Marine Sediment	EGADHQWRKDPSRELSVDLVADERGGWVTGRFEAS*
C688J35102_1208699401	3300002568	Soil	TVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
JGI26339J46600_100787101	3300003218	Bog Forest Soil	QVLMVVVRPEGAFHQWREVPPRELSIALVADERFGRATGWIEAS*
JGI26345J50200_10058922	3300003352	Bog Forest Soil	ELKNFAVRPDGAFHQWREVPPRELSIALVAGERFGRVTGWIEAS*
JGI26340J50214_100222803	3300003368	Bog Forest Soil	LYVRPDGAHRQWRKVPRRELSIALVADERFCWATGGIEAS*
Ga0068924_13507821	3300004608	Peatlands Soil	NVRPEGAHHQWRKVPHRELSIALVADERFCWATGGIEAS*
Ga0070667_1002795553	3300005367	Switchgrass Rhizosphere	MVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0070684_1014987501	3300005535	Corn Rhizosphere	SGTQASGFAVRPEGAYHQWRKDPSRELSITLVADERFGRATGRTEAS*
Ga0066699_108087492	3300005561	Soil	GAYHQWRKDPSRELSIALVADERFGRVTGWIEAS*
Ga0070761_107254541	3300005591	Soil	VRPDGAHHQWRKVPRRELSIALVADERFCRATGGIEAS*
Ga0068856_1015481201	3300005614	Corn Rhizosphere	VRPEGAFHQWREDPPRELSIALVADERFGWVTDWIEAS*
Ga0066903_1067353951	3300005764	Tropical Forest Soil	VRPDGAYHQWRRIPPRELSIGLVADERFGWATGRIEAS
Ga0075028_1003211593	3300006050	Watersheds	LQCAPKGAFHQWRRVPPRELSIALVADERFGWATGPIEAS*
Ga0075017_1010113452	3300006059	Watersheds	GAFHQWREDPPRELSIALVADERFGRATGWIEAS*
Ga0070712_1002498733	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FAVRPEGAFHQWREDPPRELSIALVADERFGWVTNRIEAS*
Ga0075362_102917421	3300006177	Populus Endosphere	EIDMFMICSVRPDGVRHQWRKMPPRELSIDLVADERFDRVTGGIGAS*
Ga0075021_111206032	3300006354	Watersheds	MHCCKAGFHTVCLIYAVRPDGAFHQWREDPPRELSIALVADERFGRVTGWIEAS*
Ga0068871_1007914942	3300006358	Miscanthus Rhizosphere	EGAYHQWRKDPSRELSITLVADERFGRATGRTEAS*
Ga0074060_118630513	3300006604	Soil	FVVRPDGAYHQWRKDPSRELSIALVADERFGRATGWIEAS*
Ga0066659_102970642	3300006797	Soil	QAVFPKVLNYAVRPDGAYHQWRKDPSRELSIALVADERFGRATGWIEAS*
Ga0079220_101808854	3300006806	Agricultural Soil	YFAVRPEGAFHQWREDPPGELSIALVADERFGWVTNWIEAS*
Ga0073928_103089082	3300006893	Iron-Sulfur Acid Spring	TVRPDGAYYQWRKNPSRELSIDLVADERFGRAIGRTEAS*
Ga0105242_107725121	3300009176	Miscanthus Rhizosphere	PTVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0116226_101115024	3300009787	Host-Associated	AVRPDGADHQWRRVPPRELSIALVADERFGRVTGWTEAS*
Ga0126314_109973952	3300010042	Serpentine Soil	LADRAAYPAIPSYSVRPDGVCHQWRKDPSRELSIDLVADERLGRVTGHVEAS*
Ga0126310_112229962	3300010044	Serpentine Soil	RPEGAYHQWRKDPFRELSIALVADERFGRATGRIEAS*
Ga0126316_10461331	3300010110	Soil	PDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0074046_109132092	3300010339	Bog Forest Soil	SKDFAVRPDGAFHQWREVPPRELSVALVADERFGRATGWIEAS*
Ga0126378_101664592	3300010361	Tropical Forest Soil	LICLGQEEFPKVLRFAVRPEGAFHQWREDPPRELSIALVADERFGWATGWIEAS*
Ga0126377_114115932	3300010362	Tropical Forest Soil	TPDYAVRPDGAYHQWRRIPPRELSIGLVADERFGWATGRIEAS*
Ga0134066_104213911	3300010364	Grasslands Soil	EVLNFVVRPEGAFHQWREDPPRELSIALVADERFGWVTNRIEAS*
Ga0105239_111882822	3300010375	Corn Rhizosphere	IFLYYAVRPDGAFHQWKEVPPRELSIALVADERFGWVTNRIEAS*
Ga0134124_103276993	3300010397	Terrestrial Soil	VRPEGAFHQWREDPPRELSIALVADERFGWVTNWIEAS*
Ga0126354_10766091	3300010857	Boreal Forest Soil	PEGAFHQWREVPPRELSIALVADERFGWVTGWIEAS*
Ga0126352_13043222	3300010859	Boreal Forest Soil	DGAYYQWKKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0126348_13248121	3300010862	Boreal Forest Soil	PDGADHQWREVPPRELSIALVADERFGWATGWIEAS*
Ga0138553_1477381	3300011047	Peatlands Soil	DGAHRQWRKVPRRELSIALVADERFCWATGGIEAS*
Ga0138592_10095191	3300011069	Peatlands Soil	PEGAHHQWRKVPHRELSIALVADERFCWATGGIEAS*
Ga0150985_1040224491	3300012212	Avena Fatua Rhizosphere	AVRPEGADHQWRRIPPRELSIAVVADERLGRVIDWAEAS*
Ga0137387_108238292	3300012349	Vadose Zone Soil	EAIFQRQREFKISAVRPDGAYHQWRKDPSRELSIALVADERFGRATGWIEAS*
Ga0134053_13834511	3300012406	Grasslands Soil	VGRRLGRRVLTFAVRPDGAFHQWREDPPRELSIALVADERFGWVTGWIEAS*
Ga0150984_1022713522	3300012469	Avena Fatua Rhizosphere	AVRPEGAFHQWREVPPGELSIALVADERFGWVTNRIEAS*
Ga0137398_110153822	3300012683	Vadose Zone Soil	RPDGAYHQWRKIPPRELLIDLVADERFVWATERAEAS*
Ga0164301_102227481	3300012960	Soil	VRPEGAFHQWREDPPRELSIALVADERFGWVTNRIEAS*
Ga0164302_100677261	3300012961	Soil	SPLVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0164308_106362582	3300012985	Soil	VRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0120154_10093351	3300013501	Permafrost	GAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0120111_10170783	3300013764	Permafrost	PMVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0120158_100437793	3300013772	Permafrost	VLPKFLNSVVRPEGAFHQWREVPPRELSIALVADERFGRVTDWTEAS*
Ga0182016_1000475116	3300014493	Bog	VVRPDGACIQWREDPPGELSIALVADERFGRATGWIE
Ga0181516_101621151	3300014655	Bog	GFQCAPMARFHQWRRDPPRELSIDLVADERFGWVTGWIEAS*
Ga0167658_10112621	3300015195	Glacier Forefield Soil	SNRMVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS*
Ga0181515_10756752	3300016730	Peatland	RPDGAHHQWRKVPPRELSIDLVADERFCWVTGGIEAS
Ga0193595_11328762	3300018890	Soil	ILNYAVRPEGADHQWRRVPPRELSIALVADERFGRVTGWIEAS
Ga0182031_11503241	3300019787	Bog	PDGACIQWWREDPPGELSIALVADERFGRATGWIEAS
Ga0210407_1000460019	3300020579	Soil	MYAVAVKFLIFVVRPDGAYHQWRKDPSRELSIALVADERFGRATGGIEAS
Ga0213875_100418361	3300021388	Plant Roots	VPGKGVYHQWRKVPPRKMSISLVADERFGWATGRIEA
Ga0213875_102767081	3300021388	Plant Roots	HTVCKNFAVRPDGAFHQWREDPPRELSIALVADERFGRATGWIEAS
Ga0210385_101119901	3300021402	Soil	RFAVRPDGAFHQWREVPPRELSIALVADERFGRATDWIEAS
Ga0210390_101557331	3300021474	Soil	VHPIKIYAVRPDGAYHQWRKDPSRELSIALVADERFGRVTGWIEAS
Ga0213853_100002251	3300021861	Watersheds	PDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0222625_10063501	3300022195	Groundwater Sediment	DWIGDFQNPDFPVRPDGAYHQWRRVPPGELSIAPVADERFGRATDWAGAS
Ga0222625_10585081	3300022195	Groundwater Sediment	PDGAYYQWRKDPPRELSIDLVADERFGRAIGRTEAS
Ga0242641_10166842	3300022499	Soil	PDGAYHQWRKDPSRELSIALVADERFGRVTGWIEAS
Ga0242668_10017071	3300022529	Soil	LIGLGQGNFPKVLNFAVRPDGAYHQWRKDPSRELSIALVADERFGRVTGWIEAS
Ga0242655_100099761	3300022532	Soil	DGAYHQWRKDLSRELSIALVADERFGRATGWFEAS
Ga0242674_10012751	3300022711	Soil	LGQGNFPKVLNFAVRPDGAYHQWRKDPSRELSIALVADERFGRVTGWIEAS
Ga0242665_102507832	3300022724	Soil	FAARPDGAYHQWRKDPSRELSIALVADERFVRVTGWIEAS
Ga0207644_100623451	3300025931	Switchgrass Rhizosphere	TSNHMVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0207669_100692851	3300025937	Miscanthus Rhizosphere	SLTVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0207704_101054971	3300025938	Miscanthus Rhizosphere	SAIPVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0207702_113554231	3300026078	Corn Rhizosphere	CPNVSKTSVFAVRPEGAFHQWREVPPRELSIALVADERFGWVTDWIEAS
Ga0207676_111316671	3300026095	Switchgrass Rhizosphere	DGAVYQWRKVPPRELSIALVADERPGRATGLVEAS
Ga0209154_11294151	3300026317	Soil	QEYVPACFANGAVRPEGADHQWRRIPLGELSIDPVVDERLGRVTERAGAS
Ga0207855_10181942	3300027039	Tropical Forest Soil	FLTFAVRPEGAFHQWREDPPRELSIALVADERFGWATGWIEAS
Ga0208859_10168683	3300027069	Forest Soil	FAVRPDGAYHQWWKAPSRELSIALVADERFGWVTGWIEAS
Ga0208606_1012683	3300027095	Forest Soil	MYAVAVKFLIFVVRPDGAYHQWRKDPSRELSIALVADERFGRATGWIEAS
Ga0209248_100218242	3300027729	Bog Forest Soil	VRPEGAYHQWRKDPSRELSIALVADERFGRATGWIEAS
Ga0209038_101592662	3300027737	Bog Forest Soil	LNFAVRPEGAYHQWRKDPSRELSIALVADERFGRATG
Ga0209073_102168632	3300027765	Agricultural Soil	FLIYAVRPEGAFHQWREVPPRELSIALVADERFGWVTDWIEAS
Ga0209772_100062273	3300027768	Bog Forest Soil	MVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0209611_104808692	3300027860	Host-Associated	LNFAVRPEGAFHQWREVPPRELSVALVADERFGRVTGRAEAS
Ga0209698_101058924	3300027911	Watersheds	RSYLPGSPEVLISAVRPEGAFHQWREDPPRELSIALVADERFGWVTGRIGAS
Ga0209069_100424813	3300027915	Watersheds	FLSFAVRPEGACRQWREDPPRELSIALVADERFGRVTGRIEAS
Ga0307310_105110822	3300028824	Soil	PDGAYHQWRKIPPRELLIDLVADERFVWATERAEAS
Ga0311357_104338432	3300030524	Palsa	TVRPDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0102760_107881361	3300031039	Soil	VQKIFIYAVRPEGAYRQWRKDPSRELSIALVADERFGRATGRIEAS
Ga0302324_1009857251	3300031236	Palsa	PVMAVRPEGAKHQWRRVPPRELSIDLVADERFGRVTGRAGAS
Ga0302187_100816571	3300031259	Bog	KNYAVRPEGAFHQWRRVPPRELSIALVADERFGRATGGTEAS
Ga0318538_107384652	3300031546	Soil	VAPEGLVFLIFAVRPEGAFHQWREDPPRELSIALVADERFGWATGWIEAS
Ga0307484_1111771	3300031663	Hardwood Forest Soil	DGAYHQWRKDPSRELSIALVADERFGRVTGWIEAS
Ga0318574_104124912	3300031680	Soil	ILTCVVRPEGAFPQWRKDPSRELSIALVADERFGRVTGWTGAS
Ga0307474_115605871	3300031718	Hardwood Forest Soil	FHAPPILFFAVRPEGAFHQWREDPPRELSIALVADERFGWVTNRIEAS
Ga0316578_106073762	3300031728	Rhizosphere	FFSPDYAVRPEGAYHQWRKIPPRELSIDLVADERFGWATGRVEAS
Ga0318509_101573691	3300031768	Soil	RQHELHSRSTKILISAVRPEGAYHQWRKDPSRELSMALVADDRFSRVTGWIEAS
Ga0318546_102768911	3300031771	Soil	AEVKIYAVRPEGAFHQWRKDPSRELSIALVADERFGRVTGWTGAS
Ga0318564_104052321	3300031831	Soil	YVDAHPWRKIPPRELSIDLVADERFGRAIERTEAS
Ga0318558_103336741	3300032044	Soil	AIFLTFAVRPEGAFHQWREDPPRELSIALVADERFGWATGWIEAS
Ga0307472_1002026172	3300032205	Hardwood Forest Soil	MYIRTVRLDGAYYQWRKDPPRELSIDLVADERFGRAIGRIEAS
Ga0335080_113841361	3300032828	Soil	HSRASRFVKILEFAVRPEGADHQWREVPPRELSIALVADERFGWVTGWIEAS
Ga0335073_107550541	3300033134	Soil	SIVPEIKIFAVRPEGADHQWREVPPRELSIALVADERFGRLTGWIEAS
Ga0272423_10817862	3300033168	Rock	NSAVRPEGADHQWRRVPPRELSIALVADERFGRVTDWIEAS