Basic Information | |
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Family ID | F091046 |
Family Type | Metagenome |
Number of Sequences | 108 |
Average Sequence Length | 42 residues |
Representative Sequence | MRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR |
Number of Associated Samples | 88 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 65.74 % |
% of genes near scaffold ends (potentially truncated) | 21.30 % |
% of genes from short scaffolds (< 2000 bps) | 78.70 % |
Associated GOLD sequencing projects | 84 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.43 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (71.296 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere (5.556 % of family members) |
Environment Ontology (ENVO) | Unclassified (23.148 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (37.037 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62 |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 11.59% β-sheet: 8.70% Coil/Unstructured: 79.71% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.43 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Sediment Peatland Groundwater Natural And Restored Wetlands Hot Spring Sediment Soil Soil Vadose Zone Soil Tropical Forest Soil Serpentine Soil Grasslands Soil Surface Soil Soil Soil Agricultural Soil Sugarcane Root And Bulk Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Natural And Restored Wetlands Tropical Peatland Fen Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere Corn Rhizosphere Soil Groundwater Sand Fen Arabidopsis Rhizosphere Tabebuia Heterophylla Rhizosphere Populus Rhizosphere Rhizosphere Rhizosphere Corn Rhizosphere Arabidopsis Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI1356J14229_1000722713 | 3300001380 | Groundwater | MLHLSRSLVCRIVGHRLPRSKRPFFLTERFQRCERCGERVRAKYR* |
soilL1_100356064 | 3300003267 | Sugarcane Root And Bulk Soil | MRRVICRALGHKLPRRRRPFFLTERYQRCERCGERVRLEDR* |
soilL1_100748443 | 3300003267 | Sugarcane Root And Bulk Soil | VNILCRVFGHRLPRRRRPFFLTDHFQRCERCGERVRLKDR* |
soilH2_101690212 | 3300003324 | Sugarcane Root And Bulk Soil | MRRVICRALGHRLPRRRRPFFLTERYQRCERCGERVRLEDR* |
Ga0062593_1001828723 | 3300004114 | Soil | VNLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR* |
Ga0062589_1022020032 | 3300004156 | Soil | VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRERP* |
Ga0062590_1002370822 | 3300004157 | Soil | VSLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR* |
Ga0062590_1016344222 | 3300004157 | Soil | VNWICRVFGHRLPRRRRPFFLTDLFQKCERCGERVRLKDR* |
Ga0062595_1006534011 | 3300004479 | Soil | MKRAVCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0062592_1011527453 | 3300004480 | Soil | VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRDRP* |
Ga0066676_109946371 | 3300005186 | Soil | VKLRCRLLGHKLPRRKRPFFLTDRFQRCERCGERVLLKDR* |
Ga0066675_102071863 | 3300005187 | Soil | MRRHLCRVLGHKLPRRRRPFFLTERFQRCERCGERVMLKGRE* |
Ga0068996_101685302 | 3300005218 | Natural And Restored Wetlands | PYPGYRVGSHMKRALCSVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0066388_1082473982 | 3300005332 | Tropical Forest Soil | MRGTFCRVLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR* |
Ga0070680_1001190913 | 3300005336 | Corn Rhizosphere | MRRLTCRVLGHKLPRRRRPFFLTERFQRCERCGKRIPLKGR* |
Ga0070682_1019237572 | 3300005337 | Corn Rhizosphere | MRRLTCRFLGHKLPRRRRPFFLTERFQRCERCGARVRLRGR* |
Ga0070708_1018624012 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLRGR* |
Ga0070741_100545044 | 3300005529 | Surface Soil | MRNVICRVLGHKLPRRKRPFFLIERYQRCERCGERVRLRDR* |
Ga0070741_105386542 | 3300005529 | Surface Soil | MRNLICRVLGHKLPRRKRPFFLIERYQRCERCGERVRLRDR* |
Ga0066692_103120052 | 3300005555 | Soil | MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL* |
Ga0066706_112795642 | 3300005598 | Soil | VRRILCTVIGHRLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0081455_100880402 | 3300005937 | Tabebuia Heterophylla Rhizosphere | VTLRCRVLGHRLPRRKRPFFLTDRFQRCERCGDRVLLKNR* |
Ga0073934_102006883 | 3300006865 | Hot Spring Sediment | VKLRCRLLGHRLPRRKRPFFLTERFQRCERCGRRIRLRDR* |
Ga0079217_117431462 | 3300006876 | Agricultural Soil | MLRCRLFGHRLPRRRRPFFLTERYQRCERCGKRVLLRGR* |
Ga0075426_112869182 | 3300006903 | Populus Rhizosphere | MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0075436_1007912822 | 3300006914 | Populus Rhizosphere | MRRTLCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0075436_1007998822 | 3300006914 | Populus Rhizosphere | VCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLRGR* |
Ga0066709_1001195815 | 3300009137 | Grasslands Soil | MRRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0066709_1046148982 | 3300009137 | Grasslands Soil | MRRILCSVVGHRLPRRKRPFFLIERYQRCERCGERVRLKDR* |
Ga0075423_101776502 | 3300009162 | Populus Rhizosphere | MKRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKDR* |
Ga0116123_11247251 | 3300009617 | Peatland | DDRLAAGRNGMARFICRIVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR* |
Ga0105089_10350551 | 3300009809 | Groundwater Sand | MCRLFGHRLPRRKRPFFVLEPPLQRCERCGKRALVKIRR* |
Ga0105058_10913952 | 3300009837 | Groundwater Sand | MNLLCRLLGHRLPRRKRPFFLTERFQRCERCGKRVRLKDR* |
Ga0126313_108568693 | 3300009840 | Serpentine Soil | LCRLVGHRLPRRKRPFFLLEPPLQRCERCGKRVLVRIGR* |
Ga0134088_103338642 | 3300010304 | Grasslands Soil | MRRALCRVIGHKLPRRKRPFFLIERYQRCQRCGERVRLKGR* |
Ga0126377_103495852 | 3300010362 | Tropical Forest Soil | VLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR* |
Ga0137391_104386861 | 3300011270 | Vadose Zone Soil | AGMRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL* |
Ga0137363_114298322 | 3300012202 | Vadose Zone Soil | MRRLTCRILGHKLPRRRRPFFLTERFQRCERCGKRVALKGR* |
Ga0137377_106465093 | 3300012211 | Vadose Zone Soil | MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKLRGQRW* |
Ga0137390_100923643 | 3300012363 | Vadose Zone Soil | MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVR |
Ga0164301_117511902 | 3300012960 | Soil | MRRLTCRFLGHKLPRRRRPFFLTERFQRCERCGKRIPLKGR* |
Ga0126369_105092732 | 3300012971 | Tropical Forest Soil | MRRILCSMVGHRLPRRKRPFFLIERYQRCERCGERVRLKGR* |
Ga0126369_114961962 | 3300012971 | Tropical Forest Soil | MRRILCSVVGHRLPRRKRPFFLIDRYQRCERCGERVRLKGR* |
Ga0075302_11629732 | 3300014269 | Natural And Restored Wetlands | MTLRCRVFGHKLLRRKRPFFLTERYQRCDRCGKRIRLKGR* |
Ga0182021_126572982 | 3300014502 | Fen | MKRVLCRVVGHRLPRRKRPFFLTDRYQRCERCGKRVRLKDR* |
Ga0137409_113262462 | 3300015245 | Vadose Zone Soil | MLCNVLGHKLPRRKRPFFLIERYQPCSRCGERVRLKGR* |
Ga0132258_102548223 | 3300015371 | Arabidopsis Rhizosphere | VNWMCRVLGHRLPRRRRPFFLTDLFQKCERCGERVRLKDR* |
Ga0132258_108614524 | 3300015371 | Arabidopsis Rhizosphere | MTLRCRLLGHKLPRRKRPFFLTDRFQRCERCGQRVLLKDR* |
Ga0132258_117371082 | 3300015371 | Arabidopsis Rhizosphere | VKRALCHVLGHRLPRRKRPFFLIERYQRCERCGERVRLKDR* |
Ga0132258_127220392 | 3300015371 | Arabidopsis Rhizosphere | MNWLCRVFGHRLPKRRRPFFLTDLFQKCERCGERVRLKDR* |
Ga0132256_1011735132 | 3300015372 | Arabidopsis Rhizosphere | RGSLCRVLGHRLPRRKRPFFLIESYQRCERCGARVRLKDR* |
Ga0132256_1022612971 | 3300015372 | Arabidopsis Rhizosphere | VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGERVPLKDRDRS* |
Ga0132255_1001566174 | 3300015374 | Arabidopsis Rhizosphere | VNWLCRVFGHRLPRRRRPFFLTDHFQKCERCGERVRLKDR* |
Ga0132255_1027496041 | 3300015374 | Arabidopsis Rhizosphere | AGRVRGSLCRVLGHRLPRRKRPFFLIERYQRCERCGARVRLKDR* |
Ga0187788_101205262 | 3300018032 | Tropical Peatland | MRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR |
Ga0187788_104633231 | 3300018032 | Tropical Peatland | MRRRFLCRVVGHRLPRRRRPFFLTERYQRCERCGERVRLRGR |
Ga0187765_101848152 | 3300018060 | Tropical Peatland | VKRLLCSVIGHKLPRRKRPFFLIERYQRCDRCGERVRLKGR |
Ga0187765_104674072 | 3300018060 | Tropical Peatland | VKRVLCNVIGHKLPRRKRPFFLIERYQRCDRCGERIRLKGR |
Ga0187765_110072981 | 3300018060 | Tropical Peatland | MRRILCNVVGHRLPRRKRPFFLIERYQRCERCGERVR |
Ga0187773_107610261 | 3300018064 | Tropical Peatland | AAVRRVLCRLVGHRLPRRHRPFFLTERYQRCERCGERVRLRGR |
Ga0190265_138415682 | 3300018422 | Soil | VVRCRIFGHRLPRRRRPFFLTERFQRCERCGRRIRLKGR |
Ga0066667_108565932 | 3300018433 | Grasslands Soil | VKLRCRLLGHKLPRRKRPFFLTDRFQRCERCGERVLLKDR |
Ga0066667_115956352 | 3300018433 | Grasslands Soil | MRRALCRVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR |
Ga0173481_101332941 | 3300019356 | Soil | VSLRCRIFGHRLPRRKRPFFLTDRFQRCERCGERVALKGR |
Ga0247786_10768532 | 3300022883 | Soil | VNWICRVFGHRLPRRRRPFFLTDLFQKCERCGERVRLKD |
Ga0179589_103713842 | 3300024288 | Vadose Zone Soil | MRRLTCRILGHKLPRRRRPFFLTERFQRCERCGKRVALKGR |
Ga0209521_102514652 | 3300025164 | Soil | MIRLSRALLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR |
Ga0209642_101490703 | 3300025167 | Soil | MVRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR |
Ga0209324_106160631 | 3300025174 | Soil | VAGYSPRMIRLSRALLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR |
Ga0209172_101406933 | 3300025310 | Hot Spring Sediment | VKLRCRLLGHRLPRRKRPFFLTERFQRCERCGKRIRLHDR |
Ga0209323_100703023 | 3300025314 | Soil | SPRMVRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCDRCGERVRAKYR |
Ga0209519_107598461 | 3300025318 | Soil | MIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR |
Ga0209640_105863382 | 3300025324 | Soil | MIRLSRSLLCRVLGHRLPRSKRSFFLTERFQRCERCGERVRAKYR |
Ga0209341_104581511 | 3300025325 | Soil | VIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKHR |
Ga0209342_104388853 | 3300025326 | Soil | MIRLSRSFLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKHR |
Ga0209342_106520571 | 3300025326 | Soil | RVLGHGLPRSKRPFFLTERFQRCERCGERVRAKHR |
Ga0209751_105006751 | 3300025327 | Soil | VSAAAGYSARMIRLSRSLLCRVLGHRLPRSKRPFFLTERFQRCERCGERVRAKYR |
Ga0207657_107535052 | 3300025919 | Corn Rhizosphere | MNWLCRVFGHRLPKRRRPFFLTDLFQKCERCGERVRLKDR |
Ga0207679_109216852 | 3300025945 | Corn Rhizosphere | VTPLRCRLFGHRLPRRKRPFFLIDRFQRCERCGARVPLKDRDRP |
Ga0210117_10888482 | 3300025985 | Natural And Restored Wetlands | PYPGYRVGSHMKRALCSVIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR |
Ga0209378_12815671 | 3300026528 | Soil | MRRELLCRLVGHKLPRRRRPFFFPERFQRCERCGERVKVRGL |
Ga0209897_10733111 | 3300027169 | Groundwater Sand | MCRLFGHRLPRRKRPFFVLEPPLQRCERCGKRVLVKIRR |
Ga0209514_1000380918 | 3300027819 | Groundwater | MLHLSRSLVCRIVGHRLPRSKRPFFLTERFQRCERCGERVRAKYR |
Ga0209514_100221831 | 3300027819 | Groundwater | VAGYSPRMLRLSLSLVCRVFGHRLPRSKRPFFLTERFQRCERCGERVRAKYR |
Ga0265337_11370732 | 3300028556 | Rhizosphere | MPKLLCRVLGHRLPRRRRPFFLTERYQRCERCGERVRLRGR |
Ga0265326_102426232 | 3300028558 | Rhizosphere | MARFLCRILGHRLPRRRRPFFLTERYQRCERCGERVRLRGR |
Ga0247818_105231602 | 3300028589 | Soil | VKLRCRVLGHRLPRRKRPFFLTERFQRCERCGERIRLKDR |
Ga0247818_110791531 | 3300028589 | Soil | VNWLCRVLGHRLPRRRRPFFLTDLFQRCERCGERVRLKDR |
Ga0265322_101854661 | 3300028654 | Rhizosphere | GDDMRFLCRILGHRLPRRRRPFFLTERYQRCERCGERIRLRGR |
Ga0265336_100428492 | 3300028666 | Rhizosphere | MRFLCRILGHRLPRRRRPFFLTERYQRCERCGERIRLRGR |
Ga0265338_100542425 | 3300028800 | Rhizosphere | MPKLLCRVLGHRLPRRRRPFFLTERYQRCDRCGERVRLRGR |
Ga0265338_101119284 | 3300028800 | Rhizosphere | MARFLCRIFGHRLPRRRRPFFLTERYQRCERCGERVRLRDR |
Ga0247825_100910865 | 3300028812 | Soil | MKLRCRLLGHRLPRRKRPFFLTELFQRCERCGERIRLKDR |
Ga0307498_100306182 | 3300031170 | Soil | VKLRCRILGHRLPRRRRPFFLTERYQRCERCGKRVRLRDR |
Ga0302321_1031308542 | 3300031726 | Fen | MKRVLCRVVGHRLPRRKRPFFLTDRYQRCERCGKRVRLKDR |
Ga0318565_103981171 | 3300031799 | Soil | SSVLCRVVGHRLPRRKRPFFITEHFQRCERCGERVLIRDR |
Ga0307409_1028112651 | 3300031995 | Rhizosphere | VNWICRVVGHRLPRRRRPFFLTDLFQRCERCGERVR |
Ga0307416_1025888781 | 3300032002 | Rhizosphere | VNWICRVVGHRLPRRRRPFFLTDLFQRCERCGERVRLKDR |
Ga0310890_114677832 | 3300032075 | Soil | VNWLCRVLGHRLPRRRRPFFLTDPFQKCERCGERVRLKD |
Ga0315281_100216659 | 3300032163 | Sediment | MALLRRSLLCRVFGHRLPRRKRPFFLTERFQRCERCGERVTAKYL |
Ga0307471_1024521332 | 3300032180 | Hardwood Forest Soil | MRRAVCRLIGHKLPRRKRPFFLIERYQRCERCGERVRLKGR |
Ga0335070_100089934 | 3300032829 | Soil | VPRFLCRVLGHRLPRRRRPFFLTERYQRCERCGERVRLRDR |
Ga0335070_100461272 | 3300032829 | Soil | MRRVMCRIVGHRLPRRRRPFFLTERYQRCERCGARVRLRGR |
Ga0335081_107232322 | 3300032892 | Soil | MARLLCRILGHRLPRRRRPFFLTERYQRCERCGERVRLRDR |
Ga0335069_1002268110 | 3300032893 | Soil | MRRVLCRIVGHRLPRRHRPFFLTERYQRCERCGARIRLRGR |
Ga0335077_112612472 | 3300033158 | Soil | VRRHLCRVIGHRLPRRRRPFFLTERYQRCERCGERVRL |
Ga0334722_101116891 | 3300033233 | Sediment | VNGPAKRFLCTVLGHKLPRRKRPFFLIERHQRCERCGERVRLKGR |
Ga0247830_107423163 | 3300033551 | Soil | VRKKGRVLGHRLPRRKRPFFLTERFQRCERCGERIRLKDR |
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