Metagenome / Metatranscriptome Family F091025

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091025
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	51 residues
Representative Sequence	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEARHSSDCPWRRFPG
Number of Associated Samples	94
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	40.74 %
% of genes near scaffold ends (potentially truncated)	45.37 %
% of genes from short scaffolds (< 2000 bps)	85.19 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.444 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (30.556 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.148 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.46% β-sheet: 0.00% Coil/Unstructured: 61.54%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02566	OsmC	25.93
PF00127	Copper-bind	9.26
PF13360	PQQ_2	5.56
PF09335	SNARE_assoc	5.56
PF13473	Cupredoxin_1	2.78
PF07681	DoxX	1.85
PF01699	Na_Ca_ex	0.93
PF00072	Response_reg	0.93
PF07690	MFS_1	0.93
PF00196	GerE	0.93
PF03640	Lipoprotein_15	0.93
PF01546	Peptidase_M20	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	25.93
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	25.93
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	5.56
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	5.56
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	5.56
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	1.85
COG4270	Uncharacterized membrane protein	Function unknown [S]	1.85
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.93
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.44 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	83.33 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	83.33 %
Unclassified	root	N/A	5.56 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.11 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	7.41 %
Unclassified	root	N/A	5.56 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	7.41 %
Unclassified	root	N/A	5.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.78 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	7.41 %
Unclassified	root	N/A	5.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	7.41 %
Unclassified	root	N/A	5.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Actinocatenispora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria bacterium 13_1_20CM_3_68_10	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	7.41 %
Unclassified	root	N/A	5.56 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.78 %
Actinocatenispora comari	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora → Actinocatenispora comari	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459015\|G14TP7Y02IVA88	Not Available	609	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100729745	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1629	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100731245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1387	Open in IMG/M
3300000880\|AL20A1W_1157405	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300001431\|F14TB_100405521	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1334	Open in IMG/M
3300001538\|A10PFW1_10112977	Not Available	643	Open in IMG/M
3300002568\|C688J35102_119213535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	655	Open in IMG/M
3300004157\|Ga0062590_101031060	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	785	Open in IMG/M
3300004463\|Ga0063356_102510731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	790	Open in IMG/M
3300005093\|Ga0062594_102051081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	613	Open in IMG/M
3300005167\|Ga0066672_10250018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1141	Open in IMG/M
3300005171\|Ga0066677_10523536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300005179\|Ga0066684_10058661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2237	Open in IMG/M
3300005181\|Ga0066678_10766959	Not Available	640	Open in IMG/M
3300005294\|Ga0065705_10643113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	682	Open in IMG/M
3300005339\|Ga0070660_100551202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	962	Open in IMG/M
3300005434\|Ga0070709_10193460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1436	Open in IMG/M
3300005434\|Ga0070709_10679110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	800	Open in IMG/M
3300005436\|Ga0070713_100069249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2975	Open in IMG/M
3300005436\|Ga0070713_100558390	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300005437\|Ga0070710_10011384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4395	Open in IMG/M
3300005437\|Ga0070710_10581481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	777	Open in IMG/M
3300005440\|Ga0070705_100138141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1600	Open in IMG/M
3300005446\|Ga0066686_10189234	All Organisms → cellular organisms → Bacteria	1375	Open in IMG/M
3300005546\|Ga0070696_100304383	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1222	Open in IMG/M
3300005557\|Ga0066704_10825016	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	576	Open in IMG/M
3300005558\|Ga0066698_10455118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300005719\|Ga0068861_100071941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2682	Open in IMG/M
3300005843\|Ga0068860_100482555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1236	Open in IMG/M
3300006575\|Ga0074053_11729530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	803	Open in IMG/M
3300006797\|Ga0066659_11167608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	643	Open in IMG/M
3300006800\|Ga0066660_10506961	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1014	Open in IMG/M
3300007265\|Ga0099794_10746614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	522	Open in IMG/M
3300009012\|Ga0066710_100720564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1523	Open in IMG/M
3300009090\|Ga0099827_10036553	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3598	Open in IMG/M
3300009092\|Ga0105250_10276668	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300009093\|Ga0105240_10613405	All Organisms → cellular organisms → Bacteria	1197	Open in IMG/M
3300009137\|Ga0066709_100803053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1363	Open in IMG/M
3300009137\|Ga0066709_104468308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300009148\|Ga0105243_10780953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	939	Open in IMG/M
3300010107\|Ga0127494_1140474	Not Available	691	Open in IMG/M
3300010136\|Ga0127447_1168109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	580	Open in IMG/M
3300010154\|Ga0127503_11227047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300010375\|Ga0105239_10260820	All Organisms → cellular organisms → Bacteria	1947	Open in IMG/M
3300010401\|Ga0134121_10755852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300010403\|Ga0134123_10868499	Not Available	904	Open in IMG/M
3300010403\|Ga0134123_10942946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300012201\|Ga0137365_11339948	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012204\|Ga0137374_10054508	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4081	Open in IMG/M
3300012206\|Ga0137380_10108819	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2533	Open in IMG/M
3300012206\|Ga0137380_10300821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1437	Open in IMG/M
3300012208\|Ga0137376_11556868	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	552	Open in IMG/M
3300012212\|Ga0150985_103909641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	621	Open in IMG/M
3300012350\|Ga0137372_10364326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1103	Open in IMG/M
3300012401\|Ga0134055_1173605	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300012908\|Ga0157286_10459466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	508	Open in IMG/M
3300012944\|Ga0137410_10449311	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300012957\|Ga0164303_10469772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	797	Open in IMG/M
3300012958\|Ga0164299_10346322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	933	Open in IMG/M
3300012960\|Ga0164301_10701782	Not Available	761	Open in IMG/M
3300012960\|Ga0164301_11623122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300012984\|Ga0164309_10166810	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1482	Open in IMG/M
3300012989\|Ga0164305_10014528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3925	Open in IMG/M
3300012989\|Ga0164305_12166572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinocatenispora → Actinocatenispora comari	511	Open in IMG/M
3300013758\|Ga0120147_1020122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1304	Open in IMG/M
3300017965\|Ga0190266_10206044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	945	Open in IMG/M
3300018027\|Ga0184605_10018436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2773	Open in IMG/M
3300018027\|Ga0184605_10061903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1608	Open in IMG/M
3300018027\|Ga0184605_10327731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	692	Open in IMG/M
3300018028\|Ga0184608_10015496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2682	Open in IMG/M
3300018051\|Ga0184620_10011806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2003	Open in IMG/M
3300018061\|Ga0184619_10013933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3214	Open in IMG/M
3300018071\|Ga0184618_10064739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1364	Open in IMG/M
3300018076\|Ga0184609_10488266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300019789\|Ga0137408_1394285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3020	Open in IMG/M
3300019875\|Ga0193701_1032806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1065	Open in IMG/M
3300020006\|Ga0193735_1108728	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300020170\|Ga0179594_10034922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1627	Open in IMG/M
3300021080\|Ga0210382_10115567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1129	Open in IMG/M
3300021411\|Ga0193709_1121323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	534	Open in IMG/M
3300021413\|Ga0193750_1003180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4405	Open in IMG/M
3300022195\|Ga0222625_1381634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	617	Open in IMG/M
3300025898\|Ga0207692_10424310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300025922\|Ga0207646_10272382	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1530	Open in IMG/M
3300025926\|Ga0207659_10809523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	805	Open in IMG/M
3300025961\|Ga0207712_10929473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	770	Open in IMG/M
3300025961\|Ga0207712_10951746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	761	Open in IMG/M
3300026277\|Ga0209350_1030449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1614	Open in IMG/M
3300026301\|Ga0209238_1087363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1075	Open in IMG/M
3300026301\|Ga0209238_1120061	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300026334\|Ga0209377_1311853	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300026523\|Ga0209808_1143712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	935	Open in IMG/M
3300027882\|Ga0209590_10051482	All Organisms → cellular organisms → Bacteria	2297	Open in IMG/M
3300028381\|Ga0268264_12290886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	547	Open in IMG/M
3300028536\|Ga0137415_11240679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	562	Open in IMG/M
3300028711\|Ga0307293_10029193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1660	Open in IMG/M
3300028714\|Ga0307309_10107644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_10	672	Open in IMG/M
3300028715\|Ga0307313_10200203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	619	Open in IMG/M
3300028793\|Ga0307299_10023420	All Organisms → cellular organisms → Bacteria	2221	Open in IMG/M
3300028799\|Ga0307284_10034338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1715	Open in IMG/M
3300028799\|Ga0307284_10095392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1106	Open in IMG/M
3300028819\|Ga0307296_10586021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300028828\|Ga0307312_10095874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1833	Open in IMG/M
3300028881\|Ga0307277_10065361	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300031231\|Ga0170824_126140495	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	928	Open in IMG/M
3300031716\|Ga0310813_10788835	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	854	Open in IMG/M
3300032205\|Ga0307472_101453319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	667	Open in IMG/M
3300033551\|Ga0247830_11606188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.04%
Host-Associated	Host-Associated	12.04%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.85%
Plants	Host-Associated → Plants	12.04%
Aquatic	Environmental → Aquatic	10.19%
Solid Waste	Engineered → Solid Waste	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.85%
Sediment	Environmental → Aquatic → Sediment	7.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Grass	Engineered → Solid Waste → Grass	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.81%
Loam	Environmental → Terrestrial → Soil → Loam	12.04%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.74%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	16.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.70%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.30%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	7.41%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.78%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459015	Litter degradation PV4	Engineered	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300010107	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010136	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012401	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013758	Permafrost microbial communities from Nunavut, Canada - A24_65cm_12M	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019875	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021413	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026277	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4PV_01205980	2170459015	Switchgrass, Maize And Mischanthus Litter	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNE
INPhiseqgaiiFebDRAFT_1007297451	3300000364	Soil	SPFLLVAAVLFVLMAKRLADMXLGEEYVCPSCGARNEARHSSDXPWRRFPG*
INPhiseqgaiiFebDRAFT_1007312453	3300000364	Soil	MSXXLLVAAVLVVLMAKRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG*
AL20A1W_11574052	3300000880	Permafrost	MSSTLLVTALLGLLMARRLADIYLGGHYVCPSCGAKDERRHSSDCPWSHPPSN*
F14TB_1004055212	3300001431	Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYACPSCGARSKARHSSDCPWRRFPG*
A10PFW1_101129771	3300001538	Permafrost	MSSTLLVTALLGLLMARRLADIYLGGHYVCPSCGAKDERRHSSDC
C688J35102_1192135352	3300002568	Soil	TFGVMSPFLLVAAVLFVLMAKRLADMYLGEAYVCPSCGARSEARHSPDCPWSRFPSA*
Ga0062590_1010310601	3300004157	Soil	LLVAAVLVVLMATRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG*
Ga0063356_1025107311	3300004463	Arabidopsis Thaliana Rhizosphere	VLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG*
Ga0062594_1020510812	3300005093	Soil	MSPFLLVAAVLVVLMAKRLIDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG*
Ga0066672_102500182	3300005167	Soil	MSPILLVAAVLFVLMAKRLADMYLGEAYVCPSCGARSEARHSPDCPWSRFPSA*
Ga0066677_105235362	3300005171	Soil	MSPVLLVVAVVVLLMAKRLLEIYAGEDYVCPSSGARSEARHSPDCPWSRFPS*
Ga0066684_100586612	3300005179	Soil	MSPFLLVIVVVVLLMAKRLADVYTGGEYACPSCGARSEHRHSPDCPWGRKS*
Ga0066678_107669591	3300005181	Soil	MSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPG*
Ga0065705_106431131	3300005294	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEARHSSDCPWRRFPG*
Ga0070660_1005512021	3300005339	Corn Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARDEARHSSDCPWRRFPG*
Ga0070709_101934604	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMAKRLLDLYAGEDYICPSCGARSEDSHSPECPWSRFPSG*
Ga0070709_106791101	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMAKRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG*
Ga0070713_1000692491	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	PPEAIAMSPFLLVAAVLVVLMAKRLIDLYAGEDYVCPSCGARSEGSHSPECPWSRFRSG*
Ga0070713_1005583901	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMAKRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRF
Ga0070710_100113846	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMATRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG*
Ga0070710_105814812	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	AVMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEAKHSSDCPWGRFPG*
Ga0070705_1001381411	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMAKRLIDLYAGEHYVCPSCGARSEGSHSPECPWSRFPSG*
Ga0066686_101892342	3300005446	Soil	MSPFLLVAAVVFVLMAKRLADMYLGEEYACPSCGARSEARHSPDCPWSRFPSG*
Ga0070696_1003043831	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRF
Ga0066704_108250162	3300005557	Soil	MSPFLLVIIVVVLLMTKRLADMYTGGEYVCPSCGARSARRHSPDCPWDRTH*
Ga0066698_104551182	3300005558	Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG*
Ga0068861_1000719411	3300005719	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSS
Ga0068860_1004825551	3300005843	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG*
Ga0074053_117295301	3300006575	Soil	GASSRLRLIAMSPFLLVAAVLVVLMAQRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG*
Ga0066659_111676082	3300006797	Soil	FLLVAAVVFVLMAKRLADMYLGEEYACPSCGARSEARHSPDCPWSRFPSG*
Ga0066660_105069612	3300006800	Soil	AAVLFVLMAKRLADMYLGEAYVCPSCGARSEARHSPDCPWSRFPSA*
Ga0099794_107466142	3300007265	Vadose Zone Soil	MSPFLLVAAVLVVLMALRLVDLYAGEDYICPSCGARSEDSHSPECPWSRFPSE*
Ga0066710_1007205641	3300009012	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRR
Ga0099827_100365535	3300009090	Vadose Zone Soil	MSPFLLVTIVVVFLMLKRLVDVYCGGQYVCPTCGARSERRHSPDCPWNHLSSG*
Ga0105250_102766682	3300009092	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARDEARHSSDCPWGRFPG*
Ga0105240_106134052	3300009093	Corn Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEAKHSSDCPWGRFPG*
Ga0066709_1008030533	3300009137	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMYLGEAYVCPSCGARSEARHSPDCPWSRFPSA*
Ga0066709_1044683081	3300009137	Grasslands Soil	AMSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPG*
Ga0105243_107809532	3300009148	Miscanthus Rhizosphere	AAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARDEARHSSDCPWGRFPG*
Ga0127494_11404742	3300010107	Grasslands Soil	MSPFLLAAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG*
Ga0127447_11681092	3300010136	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNEAR
Ga0127503_112270473	3300010154	Soil	MSPFLLVAAVLVVLMAQRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSE*
Ga0105239_102608204	3300010375	Corn Rhizosphere	SPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG*
Ga0134121_107558521	3300010401	Terrestrial Soil	MSPFLLVAAVLVVLMAKRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFP
Ga0134123_108684993	3300010403	Terrestrial Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCVARDEARHSSDCPWRRFPG*
Ga0134123_109429461	3300010403	Terrestrial Soil	LGPLAAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG*
Ga0137365_113399482	3300012201	Vadose Zone Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSKARHSSD
Ga0137374_100545084	3300012204	Vadose Zone Soil	MSPFLLVTVVVFLLMAQRLADMYVGGHYTCPSCGAKSEHRHSSDCPWGHPPSE*
Ga0137380_101088194	3300012206	Vadose Zone Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPE*
Ga0137380_103008213	3300012206	Vadose Zone Soil	VVMSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPG*
Ga0137376_115568682	3300012208	Vadose Zone Soil	MSPFLLVAAVLVVLMAQRLVDLYAGEDYVCPSCGATSEGSHSPECPWSRFPSG*
Ga0150985_1039096412	3300012212	Avena Fatua Rhizosphere	MSPFLLVSVLVVILMAKRLTDVYVGGHYMCPSCGARSERRHSPDCPWSRP
Ga0137372_103643262	3300012350	Vadose Zone Soil	MSPFLLVAAVLVILMAKRLADIYLGEEYACPTCGARSEGSHSPECPWSRFPLR*
Ga0134055_11736052	3300012401	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPE*
Ga0157286_104594661	3300012908	Soil	VAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG*
Ga0137410_104493112	3300012944	Vadose Zone Soil	MSPFLLVAAALVVLMALRLVDLYAGEDYICPSCGARSEDSHSPECPWSRFPSE*
Ga0164303_104697723	3300012957	Soil	MSPFLLVAAVLVVLMAKRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG*
Ga0164299_103463221	3300012958	Soil	GPLAVMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEAKHSSDCPWGRFPG*
Ga0164301_107017821	3300012960	Soil	MSPFLLVAAVLVVLMAKRLVDLYAGEDYVCPSCGARSEGSH
Ga0164301_116231221	3300012960	Soil	PGPLAVMSPFLLAAAVLFVLMAKRLADMYLGEEYVCPTCGARDEARHSSDCPWGRFPG*
Ga0164309_101668102	3300012984	Soil	MSPFLLVAAVFVVLMATRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG*
Ga0164305_100145286	3300012989	Soil	MSPFLLVAAVLVVLMAKRLIDLYAGEDYVCPSCGARSESSHSPECPWSRFPSG*
Ga0164305_121665722	3300012989	Soil	MSPFLLVAAVLVVLMAQRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG*
Ga0120147_10201223	3300013758	Permafrost	VMSSTLLVTALLGLLMARRLADIYLGGHYVCPSCGAKDERRHSSDCPWSHPPSN*
Ga0190266_102060442	3300017965	Soil	LFVLMAKRLADMYLGEEYVCPSCGVRDEARHSSDCPWRRFPG
Ga0184605_100184364	3300018027	Groundwater Sediment	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEARHSSDCPWRRFPG
Ga0184605_100619032	3300018027	Groundwater Sediment	MSPFLLVSIVLVLLMAKRLTDLIAGEDYRCPSCGARDEDRHSPECPWSRLPSGS
Ga0184605_103277312	3300018027	Groundwater Sediment	MSPFLLVAAVVFVLMAKRLADMYVGEEYVCPTCGARNQARHSPDCPWSRFPSG
Ga0184608_100154963	3300018028	Groundwater Sediment	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEERHSSDCPWRRFTG
Ga0184620_100118063	3300018051	Groundwater Sediment	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEAKHSSDCPWRRFTG
Ga0184619_100139334	3300018061	Groundwater Sediment	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0184618_100647391	3300018071	Groundwater Sediment	AMSPFLLVSIVLVLLMAKRLTDLIAGEDYRCPSCGARDEDRHSPECPWSRLPSGS
Ga0184609_104882661	3300018076	Groundwater Sediment	LLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEAKHSSDCPWRRFTG
Ga0137408_13942852	3300019789	Vadose Zone Soil	MSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPG
Ga0193701_10328061	3300019875	Soil	AMSPFLLVSAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0193735_11087281	3300020006	Soil	GPLAAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0179594_100349222	3300020170	Vadose Zone Soil	MSPFLLVAAVLVVLMALRLVDLYAGEDYICPSCGARSEDSHSPECPWSRFPSE
Ga0210382_101155672	3300021080	Groundwater Sediment	MSAFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEARHSSDCPWRRFPG
Ga0193709_11213232	3300021411	Soil	FLLVSIVLVLLMAKRLTDLIAGEDYRCPSCGARDEDRHSPECPWSRLPSGS
Ga0193750_10031803	3300021413	Soil	MSPFLLVAAVLVVLMALRLVEIYAGEDYVCPSCGTRNDGGHSPECPWRV
Ga0222625_13816342	3300022195	Groundwater Sediment	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEAKHSS
Ga0207692_104243103	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMATRLVDLYAGEDYICPSCGARSESSHSPECPWSRFPSG
Ga0207646_102723824	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MSPFLLVAAVLVVLMAKRLIDLYAGEDYVCPSCGARSEGSH
Ga0207659_108095233	3300025926	Miscanthus Rhizosphere	VKPPEAIAMSPFLLVAAVLVVLMAKRLIDLYAGEDYVCPSCGARSEGSHSPECPWSRFPS
Ga0207712_109294731	3300025961	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARDEARHSSDCPWG
Ga0207712_109517461	3300025961	Switchgrass Rhizosphere	PGPLAVMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPTCGARSEAKHSSDCPWGRFPG
Ga0209350_10304492	3300026277	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG
Ga0209238_10873631	3300026301	Grasslands Soil	LFVLMAKRLADMFLGEEYVCPSCGARSKARHSSDCPWRRFPG
Ga0209238_11200613	3300026301	Grasslands Soil	MSPFLLVAAVLFVLMAKRLADMFLGEEYVCPSCGA
Ga0209377_13118531	3300026334	Soil	MSPFLLVAAVVFVLMAKRLADMYLGEEYACPSCGARSEARHSPDCPWSRFPSG
Ga0209808_11437122	3300026523	Soil	MSPFLLVIVVVVLLMAKRLADVYTGGEYACPSCGARSEHRHSPDCPWGRKS
Ga0209590_100514822	3300027882	Vadose Zone Soil	MSPFLLVTIVVVFLMLKRLVDVYCGGQYVCPTCGARSERRHSPDCPWNHLSSG
Ga0268264_122908862	3300028381	Switchgrass Rhizosphere	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWGRFPG
Ga0137415_112406792	3300028536	Vadose Zone Soil	MSPFLLVTVVVVLLMSKRLANIYRGDEYVCPSCGARSAHRHSPDCPWDRTG
Ga0307293_100291933	3300028711	Soil	MSAFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0307309_101076441	3300028714	Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEAKHS
Ga0307313_102002031	3300028715	Soil	LGPLAAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0307299_100234204	3300028793	Soil	PQLGPLAAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0307284_100343382	3300028799	Soil	MSPFLLVAAVLVILMAKRLADIYLGEEYACPTCVARSEVNHSPECPWSRFPLG
Ga0307284_100953921	3300028799	Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSEAKHSSDCPWRRFT
Ga0307296_105860212	3300028819	Soil	LRPFAAMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARDEARHSSDCPWRRFPG
Ga0307312_100958744	3300028828	Soil	PFLLVAAVLVILMAKRLADIYLGEEYACPTCGARSEGNHSPECPWSRFPLG
Ga0307277_100653613	3300028881	Soil	MSPFLLVAAVFVVLMAKRLADIYLGQEYACPTCGARSEGSHSPECPWSRFPLG
Ga0170824_1261404952	3300031231	Forest Soil	MSPFLLVAAVLVVLMAQRLVDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG
Ga0310813_107888352	3300031716	Soil	MSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARSKARHSSDCPWRRFPG
Ga0307472_1014533192	3300032205	Hardwood Forest Soil	MSPFLLVAAVLVVPMAKRLIDLYAGEDYVCPSCGARSEGSHSPECPWSRFPSG
Ga0247830_116061881	3300033551	Soil	AMSPFLLVAAVLFVLMAKRLADMYLGEEYVCPSCGARNEARHSSDCPWRRFPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091025

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences