NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F091006

Metagenome Family F091006

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F091006
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 38 residues
Representative Sequence MGLRFEEINPPKKEECPMPPAKKTTKKAKSSKVEESTNS
Number of Associated Samples 75
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.78 %
% of genes near scaffold ends (potentially truncated) 15.74 %
% of genes from short scaffolds (< 2000 bps) 71.30 %
Associated GOLD sequencing projects 70
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (83.333 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(39.815 % of family members)
Environment Ontology (ENVO) Unclassified
(82.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(97.222 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48
1DelMOSpr2010_100549532
2DelMOSpr2010_100714622
3DelMOSpr2010_101414312
4DelMOWin2010_100130876
5BB_Man_B_Liq_inBBDRAFT_10157102
6BBAY94_100583682
7JGI24006J15134_100196323
8JGI24006J15134_100621462
9JGI24006J15134_100769762
10JGI24006J15134_100856752
11JGI24006J15134_102280002
12JGI24004J15324_101540921
13GOS2249_10479892
14GOS2229_10130992
15GOS2243_10248013
16Ga0055584_1000134207
17Ga0073579_15761072
18Ga0073579_16724122
19Ga0066370_100251722
20Ga0075478_100000349
21Ga0098038_100152522
22Ga0098038_100169822
23Ga0098038_10089892
24Ga0098038_10256202
25Ga0098038_10700822
26Ga0098038_10786592
27Ga0098038_11046072
28Ga0098038_11104762
29Ga0098038_11292022
30Ga0098038_11741542
31Ga0098038_11987741
32Ga0098038_12832912
33Ga0098037_11735892
34Ga0098042_10420802
35Ga0098042_10790361
36Ga0098042_10943292
37Ga0098042_11263651
38Ga0098048_10394722
39Ga0070748_11415862
40Ga0098036_10202173
41Ga0070747_12885802
42Ga0070752_13641801
43Ga0102817_10668672
44Ga0102855_11993142
45Ga0105737_10555762
46Ga0115013_113538102
47Ga0098043_10890922
48Ga0098043_11221921
49Ga0136549_100633782
50Ga0160423_101828563
51Ga0163109_101252011
52Ga0163109_107531352
53Ga0181369_10723382
54Ga0181369_10874312
55Ga0181369_11230682
56Ga0181387_10698922
57Ga0181387_10847791
58Ga0181404_10092852
59Ga0181373_10681571
60Ga0181401_10018439
61Ga0181419_10881132
62Ga0181426_10061982
63Ga0181431_10512582
64Ga0181399_11419152
65Ga0181389_11848482
66Ga0181400_12019531
67Ga0181420_10088175
68Ga0181408_10205372
69Ga0181413_10473352
70Ga0181406_11092632
71Ga0181406_11597252
72Ga0187217_12020632
73Ga0181423_12983381
74Ga0181424_1000007522
75Ga0181424_100752063
76Ga0181577_102642073
77Ga0181563_1000389729
78Ga0211529_10121002
79Ga0211712_100990612
80Ga0211527_100144323
81Ga0211677_100152785
82Ga0211678_103593831
83Ga0211554_1000315711
84Ga0211576_100044906
85Ga0211473_102647282
86Ga0213858_100028884
87Ga0213858_102058681
88Ga0213859_100982952
89Ga0213865_101800462
90Ga0222718_1000177529
91Ga0224902_1089522
92Ga0196895_10003966
93Ga0255773_103460842
94Ga0244775_106488752
95Ga0208157_10010798
96Ga0208157_10014973
97Ga0208157_10614762
98Ga0208159_10416482
99Ga0208666_100012225
100Ga0208666_10025368
101Ga0209535_10323752
102Ga0209535_11064122
103Ga0209232_11541512
104Ga0209337_10021852
105Ga0208544_100131893
106Ga0257110_10204773
107Ga0183748_100018827
108Ga0314858_036542_556_678
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: No Secondary Structure distribution: α-helix: 5.97%    β-sheet: 0.00%    Coil/Unstructured: 94.03%
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Variant

5101520253035MGLRFEEINPPKKEECPMPPAKKTTKKAKSSKVEESTNSSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
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Predicted 3D Structure

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Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.23
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
16.7%83.3%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Marine
Marine
Surface Seawater
Aqueous
Seawater
Estuary Water
Sea-Ice Brine
Marine
Estuarine
Salt Marsh
Marine
Estuarine
Estuarine Water
Pelagic Marine
Marine
Seawater
Bioluminescent Bay
Marine Methane Seep Sediment
Macroalgal Surface
39.8%2.8%2.8%5.6%3.7%2.8%2.8%8.3%3.7%18.5%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1005495323300000116MarineMAGLRFEEINPPKKEECPMPPAKKVTKKAKSSKVEESTNS*
DelMOSpr2010_1007146223300000116MarineMGLRFEEINPPKKEECPMPPAKKTTKKAKSSKVEESTNS*
DelMOSpr2010_1014143123300000116MarineMAGLRFEEINPPKKEESPTPSAKKATRKAKSSKVEESTNS*
DelMOWin2010_1001308763300000117MarineMAGMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS*
BB_Man_B_Liq_inBBDRAFT_101571023300000401Bioluminescent BayMGLRFEEINPPKKEEKPAAKKPTSRKAKASKVEE*
BBAY94_1005836823300000949Macroalgal SurfaceMGLRFEEINPPKKEEKPATAKKTSTKSTKSSKVEKSTDS*
JGI24006J15134_1001963233300001450MarineMGLRFEEINPPKKEGSSASAEKKETKKAKSSKVEE*
JGI24006J15134_1006214623300001450MarineMAEMRFEEINPPKKEESSSAKKTSKKEKATKVEESTNS*
JGI24006J15134_1007697623300001450MarineMGLRFEEINPPKKEESSSSAAKKETKKAKSSKVEE*
JGI24006J15134_1008567523300001450MarineMAGLRFEEINPPKKEECPMPPAKKETKKAKSSKVEESTNS*
JGI24006J15134_1022800023300001450MarineMAGLRFEDINPPKKEECPMPPAKKVTKKAKSSKVEESTNS*
JGI24004J15324_1015409213300001472MarineMGLRFEEINPPKKEGSSASTAKKETKKAKSSKVEE*
GOS2249_104798923300001951MarineMGLRFEEINPPKKEEKPAAKKPAAKKAKDSKVEE*
GOS2229_101309923300001963MarineMAGLRFEEINPPKKEESPTRSAKKATRKAKSSKVEESTNS*
GOS2243_102480133300001965MarineMGMRFEEINPPKKGECPMPEPKKTTKQAKSSKVEKSTNS*
Ga0055584_10001342073300004097Pelagic MarineMAGLRFEDINPPKKEEGPTPPVKKVTKKAKSSKVEESTNS*
Ga0073579_157610723300005239MarineMAGLRFEELNPPKKEEPVAPSPKKTTKRAKSSKVEESTNS*
Ga0073579_167241223300005239MarineMAGLRFEEINPPKKEESPASPAKKTTKKAKSSKVEESTNS*
Ga0066370_1002517223300005971MarineMGLRFEEINPPKKEEKPAAKKPAAKKAKASKVEE*
Ga0075478_1000003493300006026AqueousMGLRFEEINPPKKEEAPAKKPAARKTKSTKVEESTDSN*
Ga0098038_1001525223300006735MarineMGMRFEEINPPKKEECPMPEPKKTTKQAKSSKVEKSTNS*
Ga0098038_1001698223300006735MarineMGMRFEEINPPKKEECPMPEPKKATKKAKSSKVDESTKA*
Ga0098038_100898923300006735MarineMGLRFEEINPPKKEECPMPATKKETKKAKSSKVEE*
Ga0098038_102562023300006735MarineMAGMRFEEINPPKKEECSLPAKKTSKKEKATKVEESTNS*
Ga0098038_107008223300006735MarineMGMRFEELNPPKKEQCPMPEPKKTTKKAKSSKVEESTNS*
Ga0098038_107865923300006735MarineMGLRFEEINPPKKEECPMPAAKKETKKAKSSKVEE*
Ga0098038_110460723300006735MarineMGLRFEEINPPKKEGSSAPAAKKETKKAKSSKVEE*
Ga0098038_111047623300006735MarineMGLRFEEINPPKKEGSSTPAAKKETKKAKSSKVEE*
Ga0098038_112920223300006735MarineMGMRFEELNPPKSQECPMPEPKKTTKKAKSSKVDESTKD*
Ga0098038_117415423300006735MarineMGMRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTNS*
Ga0098038_119877413300006735MarineMGLRFEEINPPKKEGSSAPAAKKETKKAKASKVEE*
Ga0098038_128329123300006735MarineMGMRFEEINPPKSQECPMPEPKKTTKKAKSSKVDESTKD*
Ga0098037_117358923300006737MarineMGMRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTKS*
Ga0098042_104208023300006749MarineMGMRFEEINPPKNQECPMPEPKKAAKKAKSSKVDESTKD*
Ga0098042_107903613300006749MarineMGMRFEEINPPKKEECPMPEPKKTTKQAKSSKVEKSTKS*
Ga0098042_109432923300006749MarineMGMRFEEINPPKKGECPMPEPKKTTKQAKSSKVEKSTDS*
Ga0098042_112636513300006749MarineMGMRFEEINPPKKDECPMPEPKKTTKKAKSSKVEESTNS*
Ga0098048_103947223300006752MarineMGLRFEEINPPKKEEKPAAKKPAAKKAKDSKVAE*
Ga0070748_114158623300006920AqueousMGLRFEEINPPKKEGSSAAAAKKETKKAKSSKVEE*
Ga0098036_102021733300006929MarineMGMRFEEINPPKNQECPMPEPKKAAKKAKSSKVEESTKD*
Ga0070747_128858023300007276AqueousMGLRFEEINPPKKEGSSTSAAKKETKKAKSSKVEE*
Ga0070752_136418013300007345AqueousNSFLIMAGLRFEEINPPKKEESPTPSAKKATRKAKSSKVEESTNS*
Ga0102817_106686723300007555EstuarineMGLRFEEINPPKKEGSSASAAKKETKKAKSSKVEE*
Ga0102855_119931423300007647EstuarineRVATHQAMAEMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS*
Ga0105737_105557623300007862Estuary WaterMAEMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS*
Ga0115013_1135381023300009550MarineVPMGMRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTKS*
Ga0098043_108909223300010148MarineMGMRFEEINPPKKEECPMPEPKKATKKAKSSKVDESTKD*
Ga0098043_112219213300010148MarineMGMRFEEINPPKNQECPMPEPKKATKKAKSSKVDESTKA*
Ga0136549_1006337823300010389Marine Methane Seep SedimentMGLRFEEINPPKKEEKPAAKKPAAKKAKTSKVEE*
Ga0160423_1018285633300012920Surface SeawaterMGLRFEEINPPKKDECPMPAPKKTTKQAKSSKVEKSTKF*
Ga0163109_1012520113300012936Surface SeawaterPMGMRFEEINPPKNQECPMPEPKKTTKKVKPSKVDESTKK*
Ga0163109_1075313523300012936Surface SeawaterRFEEINPPKKEECPMPEPKKTTKQAKSSKVEKSTKS*
Ga0181369_107233823300017708MarineMAGLRFEEINPPKKEACPVPLAKKPTKKAKSSKVEESTNS
Ga0181369_108743123300017708MarineMGLRFEEINPPKKEECPMPAAKKQTKKAKSSKVEE
Ga0181369_112306823300017708MarineMGLRFEEINPPKKAGSSAPAAKKETKKAKSSKVEE
Ga0181387_106989223300017709SeawaterMGMRFEEINPPKKDECPMPEPKKTTKQVKSSKVEKSTNS
Ga0181387_108477913300017709SeawaterMAGMRFEEINPPKKEASSPARKTNKKEKATKVEESTNS
Ga0181404_100928523300017717SeawaterMGMRFEEINPPKNQECPMPEPKKTTKKAKSSKVDESTKA
Ga0181373_106815713300017721MarineMGMRFEELNPPKKEQCPMPEPKKTTKKAKSSKVEES
Ga0181401_100184393300017727SeawaterMAGLRFEEINPPKKEECPVPPAKKTTKKAKSSKVEESTNS
Ga0181419_108811323300017728SeawaterMGLRFEEINPPKKEGSSTPAAKKETKKSKSSKVEE
Ga0181426_100619823300017733SeawaterMAGMRFEEINPPKKEESSSTKKTSKKEKATKVEGSTNS
Ga0181431_105125823300017735SeawaterMGLRFEEINPPKKAGSSASAAKKETKKAKSSKVEE
Ga0181399_114191523300017742SeawaterMGLRFEEINPPKKEECPMPAAKKETKKDKSSKVEE
Ga0181389_118484823300017746SeawaterPMGMRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTNS
Ga0181400_120195313300017752SeawaterLRFEEINPPKKEECPMPPAKKTARKAKSSKVEESTNS
Ga0181420_100881753300017757SeawaterMAGLRFEEINPPKKEECPMPPAKKTTKKAKSSKVEESTNS
Ga0181408_102053723300017760SeawaterMGLRFEEINPHKKEGSSTPAAKKETKKAKSSKVEE
Ga0181413_104733523300017765SeawaterMGMRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTNS
Ga0181406_110926323300017767SeawaterMAGLRFEEINPPKKDECPMPEPKKTTKQAKSSKVEKSTNS
Ga0181406_115972523300017767SeawaterVPMGMRFEEINPPKNQECPMPEPKKTAKKAKSSKVDESTKA
Ga0187217_120206323300017770SeawaterITALILMGLRFEEINPPKKEGSSASAAKKETKKAKSSKVEE
Ga0181423_129833813300017781SeawaterMAGMRFEEINPPKKEASSPTKKTSKKEKATKVEESTNS
Ga0181424_10000075223300017786SeawaterMGMRFEEINPPKNQECPMPEPKKTTKKVKPSKVDESTKK
Ga0181424_1007520633300017786SeawaterVMGLRFEEINPPKKEGSSASAAKKETKKAKSSKVEE
Ga0181577_1026420733300017951Salt MarshMGLRFEEINPPKKEEKPAATQKAATKKAKDSKVAE
Ga0181563_10003897293300018420Salt MarshMGLRFEEINPPKKEEKPAVKKTTATKKTKSSKVAESTDS
Ga0211529_101210023300020258MarineMGLRFEEINPPKKEDKSAAAKKTATKKTKSSKVDE
Ga0211712_1009906123300020360MarineMGMRFEEINPPKKEECPMPEPKKTTKQAKSSKVEKSTKS
Ga0211527_1001443233300020378MarineMGLRFEEINPPKSQECPMPEPKKTTKKAKPSKVNESTKD
Ga0211677_1001527853300020385MarineMGLRFEEINPPKKEGSPAPAAKKETKKAKSSKVEE
Ga0211678_1035938313300020388MarineVMGLRFEEINPPKKEGSSAPAAKKETKKAKSSKVEE
Ga0211554_10003157113300020431MarineMGLRFEEINPPKKEGSSASAAKKETKKAKSSKVEE
Ga0211576_1000449063300020438MarineMGLRFEEINPPKKEECPMPATKKETKKAKSSKVEE
Ga0211473_1026472823300020451MarineMGLRFEEINPPKKEGSSASTAKKETKKAKSSKVEE
Ga0213858_1000288843300021356SeawaterMGLRFEEINPPKKEEKPAAKKPATKKAKSSTVEKSTNS
Ga0213858_1020586813300021356SeawaterIPMGLRFEEINPPKKEEKPAAKKPAAKKAKASKVEE
Ga0213859_1009829523300021364SeawaterMGLRFEEINPPKKEEKPAAKKPAAKKAKTSTVEESTNS
Ga0213865_1018004623300021373SeawaterMAGMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS
Ga0222718_10001775293300021958Estuarine WaterMAGLRFEEINPPKKEECPTPPAKRVTKKAKSSKVEESTNS
Ga0224902_10895223300022066SeawaterRGVIRSNLMGLRFEEINPPKKEEKPATAKKTSTKSTKSSKVEKSTDS
Ga0196895_100039663300022067AqueousMGLRFEEINPPKKEEAPAKKPAARKTKSTKVEESTDSN
Ga0255773_1034608423300022925Salt MarshKRLFIMGLRFEEINPPKKEEKPAAKKPAAKKAKDSKVEE
Ga0244775_1064887523300024346EstuarineMGLRFEEINPPKKEESSASAAKKETKKAKSSKVEE
Ga0208157_100107983300025086MarineMGLRFEEINPPKKEECPMPAAKKETKKAKSSKVEE
Ga0208157_100149733300025086MarineMGMRFEEINPPKKEECPMPEPKKTTKQAKSSKVEKSTNS
Ga0208157_106147623300025086MarineMGLRFEEINPPKKEGSSAPAAKKETKKAKASKVEE
Ga0208159_104164823300025101MarineMGMRFEELNPPKKEQCPMPEPKKTTKKAKSSKVEESTNS
Ga0208666_1000122253300025102MarineMGMRFEEINPPKKEECPMPEPKKATKKAKSSKVDESTKA
Ga0208666_100253683300025102MarineMGMRFEEINPPKKGECPMPEPKKTTKQAKSSKVEKSTNS
Ga0209535_103237523300025120MarineMAGLRFEEINPPKKEECPMPPAKKETKKAKSSKVEESTNS
Ga0209535_110641223300025120MarineMAEMRFEEINPPKKEESSSAKKTSKKEKATKVEESTNS
Ga0209232_115415123300025132MarineMGLRFEEINPPKKEEKPATAKKTSTKSTKSSKVEKSTDS
Ga0209337_100218523300025168MarineMGLRFEEINPPKKEGSSASAEKKETKKAKSSKVEE
Ga0208544_1001318933300025887AqueousMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS
Ga0257110_102047733300028197MarineMAEMRFEEINPPKKEESSPAKKTSKKEKATKVEESTNS
Ga0183748_1000188273300029319MarineMGLRFEEINPPKKEEKPAVKKTTATKKTKTSKVAESTDS
Ga0314858_036542_556_6783300033742Sea-Ice BrineMAGLRFEDINPPKKEECPMPPAKKVTKKAKSSKVEESTNS


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