Metagenome / Metatranscriptome Family F090729

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090729
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	64 residues
Representative Sequence	VGRPPAGRSGTDDLKARAQAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQTGVSRDSSKRL
Number of Associated Samples	82
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.70 %
% of genes near scaffold ends (potentially truncated)	26.85 %
% of genes from short scaffolds (< 2000 bps)	81.48 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (12.963 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.96% β-sheet: 0.00% Coil/Unstructured: 63.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13408	Zn_ribbon_recom	34.26
PF01297	ZnuA	0.93
PF13191	AAA_16	0.93
PF13671	AAA_33	0.93
PF02776	TPP_enzyme_N	0.93
PF05199	GMC_oxred_C	0.93
PF02597	ThiS	0.93
PF01545	Cation_efflux	0.93
PF01694	Rhomboid	0.93
PF00126	HTH_1	0.93
PF07549	Sec_GG	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.93
COG0341	Preprotein translocase subunit SecF	Intracellular trafficking, secretion, and vesicular transport [U]	0.93
COG0342	Preprotein translocase subunit SecD	Intracellular trafficking, secretion, and vesicular transport [U]	0.93
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.93
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.93
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.93
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	0.93
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	81.48 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	69.44 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	44.44 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	12.96 %
Unclassified	root	N/A	12.96 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.85 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Cellulomonadaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae	9.26 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Cellulomonas	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas	9.26 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Cellulomonas flavigena	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	9.26 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	4.63 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908039\|B3_v_NODE_775_len_674_cov_5_108309	Not Available	724	Open in IMG/M
2140918024\|NODE_360359_length_660_cov_5.810606	Not Available	710	Open in IMG/M
3300000956\|JGI10216J12902_106527682	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1202	Open in IMG/M
3300000956\|JGI10216J12902_110580662	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1456	Open in IMG/M
3300001532\|A20PFW1_1179636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1353	Open in IMG/M
3300001534\|A15PFW1_10093679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1742	Open in IMG/M
3300001535\|A3PFW1_10239331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	595	Open in IMG/M
3300001535\|A3PFW1_10270848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1097	Open in IMG/M
3300001536\|A1565W1_10851092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1873	Open in IMG/M
3300001538\|A10PFW1_10078922	Not Available	622	Open in IMG/M
3300001538\|A10PFW1_10110882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	972	Open in IMG/M
3300001538\|A10PFW1_10375783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	555	Open in IMG/M
3300001538\|A10PFW1_12431655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	642	Open in IMG/M
3300001686\|C688J18823_10861293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	575	Open in IMG/M
3300002568\|C688J35102_119868773	All Organisms → cellular organisms → Bacteria → Terrabacteria group	798	Open in IMG/M
3300002568\|C688J35102_119869427	Not Available	798	Open in IMG/M
3300002568\|C688J35102_120901938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2153	Open in IMG/M
3300003321\|soilH1_10157865	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300003993\|Ga0055468_10279123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	531	Open in IMG/M
3300004081\|Ga0063454_100435792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	893	Open in IMG/M
3300004479\|Ga0062595_100747131	Not Available	795	Open in IMG/M
3300005172\|Ga0066683_10665472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	622	Open in IMG/M
3300005329\|Ga0070683_101981132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300005332\|Ga0066388_101943427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1052	Open in IMG/M
3300005332\|Ga0066388_101989792	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1041	Open in IMG/M
3300005339\|Ga0070660_100610872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	912	Open in IMG/M
3300005339\|Ga0070660_101352122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	605	Open in IMG/M
3300005468\|Ga0070707_100507939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1167	Open in IMG/M
3300005468\|Ga0070707_101369335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	674	Open in IMG/M
3300005529\|Ga0070741_10000424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	156919	Open in IMG/M
3300005530\|Ga0070679_100044289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4433	Open in IMG/M
3300005530\|Ga0070679_102054629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	521	Open in IMG/M
3300005532\|Ga0070739_10000627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	64533	Open in IMG/M
3300005535\|Ga0070684_100679489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	959	Open in IMG/M
3300005535\|Ga0070684_100786543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	889	Open in IMG/M
3300005538\|Ga0070731_10036357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3314	Open in IMG/M
3300005553\|Ga0066695_10220488	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1193	Open in IMG/M
3300005556\|Ga0066707_10928884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300005563\|Ga0068855_101595729	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	668	Open in IMG/M
3300005764\|Ga0066903_100760247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1723	Open in IMG/M
3300005764\|Ga0066903_103543870	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	841	Open in IMG/M
3300005891\|Ga0075283_1077765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	601	Open in IMG/M
3300005894\|Ga0075270_1038688	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300005903\|Ga0075279_10052413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	682	Open in IMG/M
3300006046\|Ga0066652_101921208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	530	Open in IMG/M
3300006059\|Ga0075017_100956218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	666	Open in IMG/M
3300006175\|Ga0070712_100019554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	4419	Open in IMG/M
3300006638\|Ga0075522_10108866	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1490	Open in IMG/M
3300006854\|Ga0075425_102595174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	560	Open in IMG/M
3300006904\|Ga0075424_100825323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	989	Open in IMG/M
3300009012\|Ga0066710_101141138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1206	Open in IMG/M
3300014497\|Ga0182008_10178921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1072	Open in IMG/M
3300016445\|Ga0182038_11756463	Not Available	559	Open in IMG/M
3300017787\|Ga0183260_10032886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3907	Open in IMG/M
3300017787\|Ga0183260_10139810	All Organisms → cellular organisms → Bacteria	1731	Open in IMG/M
3300017789\|Ga0136617_10223235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1579	Open in IMG/M
3300017789\|Ga0136617_10437867	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1049	Open in IMG/M
3300017789\|Ga0136617_11030279	Not Available	624	Open in IMG/M
3300017947\|Ga0187785_10314986	All Organisms → cellular organisms → Bacteria → Terrabacteria group	724	Open in IMG/M
3300017966\|Ga0187776_11419791	Not Available	530	Open in IMG/M
3300018061\|Ga0184619_10008795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3911	Open in IMG/M
3300018076\|Ga0184609_10533619	Not Available	531	Open in IMG/M
3300018469\|Ga0190270_11278152	All Organisms → cellular organisms → Bacteria → Terrabacteria group	775	Open in IMG/M
3300018481\|Ga0190271_11468950	All Organisms → cellular organisms → Bacteria → Terrabacteria group	799	Open in IMG/M
3300018482\|Ga0066669_10776972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300020082\|Ga0206353_11341169	Not Available	512	Open in IMG/M
3300024331\|Ga0247668_1069699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	711	Open in IMG/M
3300025912\|Ga0207707_10314683	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1352	Open in IMG/M
3300025912\|Ga0207707_10391462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1194	Open in IMG/M
3300025912\|Ga0207707_10921247	Not Available	721	Open in IMG/M
3300025913\|Ga0207695_11667802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	518	Open in IMG/M
3300025919\|Ga0207657_10676437	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	802	Open in IMG/M
3300025919\|Ga0207657_11003923	Not Available	640	Open in IMG/M
3300025922\|Ga0207646_10176315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1931	Open in IMG/M
3300025929\|Ga0207664_10003075	All Organisms → cellular organisms → Bacteria	11083	Open in IMG/M
3300025949\|Ga0207667_10977876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	835	Open in IMG/M
3300026041\|Ga0207639_10703268	Not Available	938	Open in IMG/M
3300027638\|Ga0208612_1002853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6894	Open in IMG/M
3300027773\|Ga0209810_1000627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	71164	Open in IMG/M
3300027882\|Ga0209590_10734557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	630	Open in IMG/M
3300028040\|Ga0247704_1003101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3492	Open in IMG/M
3300028744\|Ga0307318_10063418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1230	Open in IMG/M
3300028771\|Ga0307320_10010647	All Organisms → cellular organisms → Bacteria	3287	Open in IMG/M
3300028784\|Ga0307282_10073048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1562	Open in IMG/M
3300028814\|Ga0307302_10088171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1474	Open in IMG/M
3300028878\|Ga0307278_10000111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39429	Open in IMG/M
3300028878\|Ga0307278_10119094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1185	Open in IMG/M
3300031228\|Ga0299914_10451229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1116	Open in IMG/M
3300031341\|Ga0307418_1024069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1733	Open in IMG/M
3300031450\|Ga0272433_10000774	All Organisms → cellular organisms → Bacteria	63965	Open in IMG/M
3300031938\|Ga0308175_100111273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	2547	Open in IMG/M
3300031938\|Ga0308175_101294139	All Organisms → cellular organisms → Bacteria → Terrabacteria group	812	Open in IMG/M
3300031938\|Ga0308175_101589095	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300032160\|Ga0311301_11792364	All Organisms → cellular organisms → Bacteria → Terrabacteria group	732	Open in IMG/M
3300032770\|Ga0335085_10593951	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1247	Open in IMG/M
3300032770\|Ga0335085_11639097	Not Available	665	Open in IMG/M
3300032782\|Ga0335082_10058832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3934	Open in IMG/M
3300032782\|Ga0335082_11444511	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	558	Open in IMG/M
3300032783\|Ga0335079_11390545	All Organisms → cellular organisms → Bacteria → Terrabacteria group	697	Open in IMG/M
3300032829\|Ga0335070_10124672	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2657	Open in IMG/M
3300032829\|Ga0335070_10392952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1328	Open in IMG/M
3300032896\|Ga0335075_10205263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2348	Open in IMG/M
3300032897\|Ga0335071_10606769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1046	Open in IMG/M
3300032898\|Ga0335072_10505962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1250	Open in IMG/M
3300032898\|Ga0335072_11558576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	560	Open in IMG/M
3300032954\|Ga0335083_10246230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Cellulomonadaceae → Cellulomonas → Cellulomonas flavigena	1602	Open in IMG/M
3300032955\|Ga0335076_10363539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300033004\|Ga0335084_10197178	All Organisms → cellular organisms → Bacteria	2091	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.81%
Host-Associated	Host-Associated	10.19%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.63%
Aquatic	Environmental → Aquatic	10.19%
Plants	Host-Associated → Plants	10.19%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	78.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.41%
Freshwater	Environmental → Aquatic → Freshwater	5.56%
Sediment	Environmental → Aquatic → Sediment	2.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%
Marine	Environmental → Aquatic → Marine	1.85%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.74%
Loam	Environmental → Terrestrial → Soil → Loam	20.37%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	17.59%
Ice	Environmental → Aquatic → Freshwater → Ice	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	17.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.04%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	11.11%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.41%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	5.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.33%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	8.33%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.41%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.63%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	4.63%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.70%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.78%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908039	Soil microbial communities from permafrost in Bonanza Creek, Alaska, sample from Bog Site B4	Environmental	Open in IMG/M
2140918024	Permafrost microbial communities from permafrost in Bonanza Creek, Alaska - Bog_all	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001532	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-PF 12A)- 1 week illumina	Environmental	Open in IMG/M
3300001534	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina	Environmental	Open in IMG/M
3300001535	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illumina	Environmental	Open in IMG/M
3300001536	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-65cm-8A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300005894	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_5C_0N_203	Environmental	Open in IMG/M
3300005903	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_0N_303	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006638	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostL2-A	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024331	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028040	Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 4-1-W_N	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031341	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-20	Environmental	Open in IMG/M
3300031450	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
B3_v_00205850	2124908039	Soil	RVWRGGVGRPPAGRSGTEELKARAVAWVEATCADQDVPVKLSDPVALGKVAELLAQRCQTGVSRDSSKRL
B_all_v_01827860	2140918024	Soil	WRGGVGRPPAGRSGTEELKARAVAWVEATCADQDVPVKLSDPVALGKVAELLAQRCQTGVSRDSSKRL
JGI10216J12902_1065276822	3300000956	Soil	RRGGVGRPPAGLSGADELKARALAWVERTCMDQNVPVKLSDPLALDKVAELLAQGRQTGVKRDSSNRL*
JGI10216J12902_1105806621	3300000956	Soil	VWRGGVGRPPAGRSGTDELKARAVAWVERTCMDQNVSVKLSDPLALDKVAELLAQGRQTGVKRESSNRL*
A20PFW1_11796363	3300001532	Permafrost	RVWRGGVGRPPAGRSGTEELKARAVAWVERTCMDQNVPVKLSDPLALAKVAELLAQGRQTGVSRDSSKRL*
A15PFW1_100936792	3300001534	Permafrost	VGRPPAGRSGTEELKARAVAWVERTCMDQNVPVKLSDPLALAKVAELLAQGRQTGVSRDSSKRL*
A3PFW1_102393312	3300001535	Permafrost	VGRLPAGRSGADELKARAVAWVERTCADQKVPVKLSDQVALDRVAELLAQGSQTGVSRDSSKRL*
A3PFW1_102708482	3300001535	Permafrost	VGRPPVGRSGTDDLKARAVAWVERTCADQNVPVKLSDPLALAKVAEILAQRRQAGVSRDSSKRL*
A1565W1_108510922	3300001536	Permafrost	VGRPLAGRSGIDDDLTARALAWVERTCLDQGVSVKLSDPLALEKVAELLAQGRQTGVRRDSSKRL*
A10PFW1_100789222	3300001538	Permafrost	ADELKARAVAWVERTCADQKVPVKLSDQVALDRVAELLAQGSQTGVSRDSSKRL*
A10PFW1_101108822	3300001538	Permafrost	MARRPAGRSGIDDLQARAIAWVEQACVDQGVPVKLSDPLALAKVAELLAQGRSTAVKRDSSKRL*
A10PFW1_103757832	3300001538	Permafrost	DYKARAMAWVERHCADQNVPVKLSDPLALDKVAEILAQGRKRGVKRDSSKRL*
A10PFW1_124316552	3300001538	Permafrost	VGRPPAGRSGTSDLKARAVAWVEATCADQHMPVKLSDPVALAKVAELLAQGCQTGVSRDSSKRL*
C688J18823_108612932	3300001686	Soil	WRGGMGRPRAGRSGTDDLKARAIAWVEGSCMDQGIPIEISDPQTIAAVAEILRQGRQKAVRRDSSKRL*
C688J35102_1198687732	3300002568	Soil	MGRPLAGRSGTKDYKARAMAWVERHCADQNVPVKLSDPLALEKVAEILAQGRKRGVKRDSSKRL*
C688J35102_1198694272	3300002568	Soil	MGRPPAGRSGTKDYKARAMAWVERHCADQNVPVKLSDPLALERVAEILAQGRKRGVRRDSSKRL*
C688J35102_1209019382	3300002568	Soil	MGRPRAGRSGTDDLKARAIAWVEGSCMDQGIPIEISDPQTIAAVAEILRQGRQKAVRRDSSKRL*
soilH1_101578651	3300003321	Sugarcane Root And Bulk Soil	RPPAGRSGTDEDLKARAIAWTERHCADQNVPVKLSDPLAVEKVAALLAQGRKRGVRRDSSKRL*
Ga0055468_102791232	3300003993	Natural And Restored Wetlands	MGRRPAGRSGLDDELRARAQAWAERTCAEQGIPVRLSDAQAVAQVAELLAQARQTGVSRDSSKRL*
Ga0063454_1004357922	3300004081	Soil	APLATWDPRRNGCGSPRRWRGGMGRPRAGRSGTDDLKARAIAWVEGSCMDQGIPIEISDPQTIAAVAEILRQGRQKAVRRDSSKRL*
Ga0062595_1007471312	3300004479	Soil	MGRQPAGRSGADDLKARAIAWIEQAAAEQGVPVKLSDPLALARVAELLAQGRKTGSSRDSSKRL*
Ga0066683_106654721	3300005172	Soil	VGRPPAGRSGTDDLKARAAAWVERTCMDQNVPVKLSDQVALERVAELLAQGSQTGVSRDSSKRL*
Ga0070683_1019811322	3300005329	Corn Rhizosphere	CRRRWRGGVGRPPAGRSGTDDLKARAIAWVERGCMDQGIPVEISDPQTIQAVAEILRQGRQKAVRRDSSKRL*
Ga0066388_1019434271	3300005332	Tropical Forest Soil	VGRPPAGRSGTDDLKARAQAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQTGVSRDSSKRL*
Ga0066388_1019897922	3300005332	Tropical Forest Soil	MGRQPAGRSGADDLKARAIAWVEQAAEEQGVPVKLSDPLALAKVAELLSQGRKTGSSRDSSKRL*
Ga0070660_1006108722	3300005339	Corn Rhizosphere	MGRPRAGRSGTDDLKARAVAWVERTCADQNVPVKLSDQVVLEKVAEILAQRRQAGVSRDSSNRL*
Ga0070660_1013521222	3300005339	Corn Rhizosphere	VGRPPAGRSGTDEDLKARAIAWTERHCADQNVPVKLSDPVSVEKVAELLAQGRKRGVRRDSSKRL*
Ga0070707_1005079392	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGRQPAGRSGPDDLHARAVAWVEAHCAAQGVPVKLSDPLALAKIAELLAQGRKTGSSRDSSKRL*
Ga0070707_1013693352	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGRPPAGRSGTKDYKARAMAWVERHCADQNVPVKLSDPLALEKVAEILAQGRKRGVKRDSSKRL*
Ga0070741_1000042474	3300005529	Surface Soil	MPAGRSGANDLQARAQAWVERTCLDQGVPVKLSDPLALEKVAELLSQGRQRGVRRDSSKRL*
Ga0070679_1000442894	3300005530	Corn Rhizosphere	VARPPAGRSGIDEALKARALAWVERTCLDQGVSVKLSDPLALAKVAELLAQGCQTGVRRDSSKRL*
Ga0070679_1020546291	3300005530	Corn Rhizosphere	VGRPPAGRSGTDEDLKARAIAWTERHCADQNVPVKLSDPLALEKVAEILAQGRKRGVRRDSSKRL*
Ga0070739_1000062767	3300005532	Surface Soil	VGRPPAGRSGADDLKARAIAWAERTCADQGIPVEISDPLTIAKVAEILRQGRQKGVRRDSSKRL*
Ga0070684_1006794891	3300005535	Corn Rhizosphere	GTDDLKARAVAWVERTCADQNVPIKLSDPLALDKVAEILAQRRQAGVSRDSSKRL*
Ga0070684_1007865431	3300005535	Corn Rhizosphere	VARPPARRSGTNDLKARAIAWVEATCADQNVPVKLSDPLALAKVAEILAHRRQAGVSRDSSRR
Ga0070731_100363573	3300005538	Surface Soil	VGRPPAGRSGTKNDYTARAMAWVERHCVDQGVPVKLSDPVAVEKVAELLAQGRKRGVRRDSSKRL*
Ga0066695_102204882	3300005553	Soil	VARPPAGRSGISGGELAARAVAWVERTCADQGVAVKVSDSQTVETVKELLAQGRQKGVSRDSSKRL*
Ga0066707_109288842	3300005556	Soil	VGRLPAGRSGAEDLRARAVAWVERTCAEQGVPVKLSDPLLLAKVAELLAQGRQSG
Ga0068855_1015957292	3300005563	Corn Rhizosphere	VGRPPAGRSGTKDYKARAMAWVEHHCADQNVPVKLSDPLALEKVAEILSQGTKRGVKRDSSKRL*
Ga0066903_1007602472	3300005764	Tropical Forest Soil	MGRQPAGRSGADDLKARAIAWVEQAAAEQGVPVKLSDPLALARVAELLSQGRKTGSSRASSKRL*
Ga0066903_1035438702	3300005764	Tropical Forest Soil	VGRLPAGRSGTDDLQARAVAWVERTCAEQGVPVKLSDQLALAKVAELLAQGRQNGVRRDSSKRL*
Ga0075283_10777652	3300005891	Rice Paddy Soil	RPPAGRSGASDDLQARAEAWVERTCLDQGVPVKLSDPLALERVAELLAQGRQTGASRESSKRL*
Ga0075270_10386882	3300005894	Rice Paddy Soil	VGRPPAGRSGTDDLKARAQAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQRGVRRDSSKRL*
Ga0075279_100524131	3300005903	Rice Paddy Soil	VARPPAGRSGASDDLQARAEAWVERTCLDQGVPVKLSDPLALERVAELLAQGRQTGASR
Ga0066652_1019212082	3300006046	Soil	DDRRARAVAWVERTCAEQGVPVKLSDPLLLAKVAELLAQGRQSGVRRDSSKRL*
Ga0075017_1009562181	3300006059	Watersheds	MGRQPAGHSGTDDLNARAIAWVEQACADQNVPVKITDPLILERVAELLAQGRESVSRDSSKRL*
Ga0070712_1000195546	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VGRPPAGRSGTNDLRARAMAWVERTCADQGVPVKLSDPLALEKVAELLAQGRQTGVKRDSSKRL*
Ga0075522_101088662	3300006638	Arctic Peat Soil	VGRPPAGRSGTEELKARAVAWVEATCADQDVPVKLSDPVALGKVAELLAQRCQTGVSRDSSKRL*
Ga0075425_1025951742	3300006854	Populus Rhizosphere	VGRPPAGPSGTNDLRARAKAWVERTCADQGVPVKLSDPLALEKVAELLAHGRQTGVKRD
Ga0075424_1008253232	3300006904	Populus Rhizosphere	MGRQPAGRSGTDDLRARAIAWVERACADQDVPVKLSDPLALARIAELLAQGRKTGSSRDSSKRL*
Ga0066710_1011411382	3300009012	Grasslands Soil	VGRLPAGRSGADDLRARAVAWVERTCAEQGVPVKLSDPLLLAKVAELLAQGRQTGVSRDSSKRL
Ga0182008_101789212	3300014497	Rhizosphere	MGRQPAGRSGTDDLKARAIAWVEQAAAEQGVPVKLSDPLALAQVAELLAQGRKTGSSRDSSKRL*
Ga0182038_117564632	3300016445	Soil	MGHQPAGRSGADDLKARAIAWVERACADQDVPVKLSDPLALDKVAELLAQGRKTGSSRDSSKRL
Ga0183260_100328863	3300017787	Polar Desert Sand	VARQPAGRSGTNDLKARAIAWVERTCADQNVPVKLSDPLALEKVAEILAQRRQDGVSRDSSKRL
Ga0183260_101398101	3300017787	Polar Desert Sand	SGVGRPPAGRSGTDDLKARAVAWVERTCMDQNVPVKLSDPAALDKVAELLAQRSQTGVSRDSSKRL
Ga0136617_102232352	3300017789	Polar Desert Sand	VGRPPAGRSGTEDLKARAQAWVEGTCLVQGVPVKLSDPLALAKVAELLAQGRQTGVKRDSSKRL
Ga0136617_104378672	3300017789	Polar Desert Sand	VGRPPAGRSGTDDLKARAVAWVERSCLDQNVPVKLSDALALDKVAELLAQGRQTGVKRDSSKRL
Ga0136617_110302792	3300017789	Polar Desert Sand	VGRPPAGRSGTDDLQARAQAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQTGVRRDSSKRL
Ga0187785_103149862	3300017947	Tropical Peatland	AGRSGPDDDLKARAHAWVERTCLDQGIPVKVSDPQTIKRVAELLAQGRQKGVNRDSSKRL
Ga0187776_114197912	3300017966	Tropical Peatland	MGRQPAGRSGPEDLKARAIAWVEAHCAAQGVPVKLSDPVALARIAELLAQGRKTGSSRDSSKRL
Ga0184619_100087952	3300018061	Groundwater Sediment	VGRPPAGRSGIDETLRARAVAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQAGASRDSSKRL
Ga0184609_105336192	3300018076	Groundwater Sediment	VGRPPVGRSGTDELKARAVAWVERTCADQNVPVKLADPLVLEKVAEVLAQGRQTGVNRDSSKRL
Ga0190270_112781522	3300018469	Soil	RSGTEDLKARAIAWVEATCADQGVPVKLSDPVALEKIAEILAQRRQAGVSRDSSKRL
Ga0190271_114689502	3300018481	Soil	GCRRVLRGGMGRPRAGRSGTEDLKARAIAWVEATCADQGVPVKLSDPVALEKIAEILAQRRQAGVSRDSSKRL
Ga0066669_107769722	3300018482	Grasslands Soil	VGRPPAGRSGIDETLKARAVAWVERTCLDQGVPVKLSDPLALEKVAELLAQGRQAGVSRDSSKRL
Ga0206353_113411691	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	RPATWDLRRNGCGSRQRWRGGVGRPPAGRSGTEDLKARAMAWVERTCADQNVPVKLSDPLALEKVAEILAQRRQAGVSRDSSKRL
Ga0247668_10696992	3300024331	Soil	MGRPPAGRSGTDDLKARAVAWVERTCADQNVPVKLSDPLALAKVAEILAQRRQAGVSRDSSKRL
Ga0207707_103146831	3300025912	Corn Rhizosphere	GMGRPPAGRSGTKDYKARAMAWVEHHCADQNVPVKLSDPLALEKVAEILAQGRKRGVKRDSSKRL
Ga0207707_103914622	3300025912	Corn Rhizosphere	MGRPRAGRSGTDDLKARAVAWVERTCADQNVPVKLSDQVVLEKVAEILAQRRQAGVSRDSSNRL
Ga0207707_109212472	3300025912	Corn Rhizosphere	MGRPPAGRSGTDDLKARAVAWVERTCADQNVPIKLSDPLALDKVAEILAQRRQAGVSRDSSKRL
Ga0207695_116678022	3300025913	Corn Rhizosphere	MGRQPAGRSGADDLRARAIAWVEQAAADQGVPVKLSDPLALGKVAELLAQGRKTGSSRDSSKRL
Ga0207657_106764372	3300025919	Corn Rhizosphere	VGRPPAGRSGTDDDLKARAIAWVERTCADQGIPVKVKDEVTAETLARLLAQGRQRG
Ga0207657_110039231	3300025919	Corn Rhizosphere	RWRGGVGRPPAGRSGTDDLKARAIAWVERGCMDQGIPVEISDPQTIQAVAEILRQGRQKAVRRDSSKRL
Ga0207646_101763152	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MGRQPAGRSGPDDLHARAVAWVEAHCAAQGVPVKLSDPLALAKIAELLAQGRKTGSSRDSSKRL
Ga0207664_100030752	3300025929	Agricultural Soil	VGRPPAGRSGTDDLKARAIAWVERSCADQGVPVKLSDPLALAKVAEILAQGRGTAVSRDSSKRL
Ga0207667_109778762	3300025949	Corn Rhizosphere	MGRPRAGRSGTDDLKARAVAWVERTCADQNVPVKLSDQVVLEKVAEILAQRRQAGVSRD
Ga0207639_107032682	3300026041	Corn Rhizosphere	VGRPPAGRSGTDEDLKARAIAWTERHCADQNVPVKLSDPVSVEKVAELLAQGRKRGVRRDSSKRL
Ga0208612_10028532	3300027638	Polar Desert	VGRPPAGRSGTDDLKPRAVAWVECSCLDQNVPVKLSDPLTLDKVAELLAQGRQTGVKRDSSKRL
Ga0209810_100062721	3300027773	Surface Soil	VGRPPAGRSGADDLKARAIAWAERTCADQGIPVEISDPLTIAKVAEILRQGRQKGVRRDSSKRL
Ga0209590_107345571	3300027882	Vadose Zone Soil	VARPPAGRSGTDDLKARAVAWVEATCADQNVPVKLADSVALAKVAELLAQGCQTGVSRD
Ga0247704_10031014	3300028040	Soil	VGRPPAGRSGADDFLARAQAWVERTCMDQNVPVKLSNPHALDKVAELLAQGRQTGRRRDSSKRL
Ga0307318_100634182	3300028744	Soil	VGRLPAGHSGTDELKARAVAWVERTCADQKVPVKLSDQVALDRVAELLAQGSQTGVSRDSSKRL
Ga0307320_100106477	3300028771	Soil	WALSRSGSGFRRRRRGGVGRLPAGHSGTDELKARAVAWVERTCADQKVPVKLSDQVALDRVAELLAQGSQTGVSRDSSKRL
Ga0307282_100730482	3300028784	Soil	VGRPPAGRSGTDDLRARAIAWVERTCADQNVPVKLSDPLLLAKVAELLAQGRQTGVSRDSSKRL
Ga0307302_100881712	3300028814	Soil	VGRLPAGRSGADDLRARAVAWVERTCADQNVPVKLSDPLLLAKVAELLAQGRQTGVSRDSSKRL
Ga0307278_1000011117	3300028878	Soil	VGRPPAGRSGTDELKARAVAWVEATCADQHVEVKLSDPVVLDRVAELLAQGCQTGVSRVSSKRL
Ga0307278_101190942	3300028878	Soil	MGRQPAGRSGADDLRARAIAWVERTCADQNVPVKLSDPLLLAKVAELLAQGRQTGMRRDSSKRL
Ga0299914_104512292	3300031228	Soil	VGRPPAGRSGADELKARAQAWVERTCMDQNVPVKLSDPLALDKVAELLAQGRQTGVRRDSSKRL
Ga0307418_10240692	3300031341	Salt Marsh	VARPPAGRSGTNDLKARAEAWVERTCADQGIPVEISDPLTVGKVAEILAQGSQTGLRRASSKRL
Ga0272433_1000077463	3300031450	Rock	VGRPPAGRSGTNDLKARAQAWVEGTCLVQGVPVKLSDPLALAKVAELLAQGRQTGVKRDSSKRL
Ga0308175_1001112732	3300031938	Soil	MGRQPAGRCGTEDLKARAIAWVEQACADQGVPVKLSDPLALAKIAELLAQGRKTGSSRDSSKRL
Ga0308175_1012941392	3300031938	Soil	MGRPRAGRSGTDDLKTRAMAWVEATCADQNVPVKLSDPLALAKVAEILAQRRQAGVSRDSSKRL
Ga0308175_1015890952	3300031938	Soil	VGRPRAGRSGTDDDFEARVRAWVEATCADQDVEVKVKDPLTLAKVAEILAQGRQTGVKRDSSKRL
Ga0311301_117923641	3300032160	Peatlands Soil	MAHPPAGHSGTDDLQTRARAWAERTCADQGIPLKVSDPATIANVAELLAQGRQKGVKRASSKRL
Ga0335085_105939512	3300032770	Soil	MGRRPAGRAGTDDLRARAIAWVEQAAEKQGVPVKLADPLALARVAELLAQGRKTGSSRDSSKRL
Ga0335085_116390972	3300032770	Soil	VARPPAGRSGTDDLKARALAWVERTCLDQGVPVKLSDPVALAKVAELLAQGCQTGVSRDSSKRL
Ga0335082_100588323	3300032782	Soil	VGRLPARRTGADDLRGRAVAWVERTCAEQGVPVKLSDPLLLAKVAELMAQGRQTGSRRDSSKRL
Ga0335082_114445112	3300032782	Soil	VGRPPAGRSGTDDLKARAIAWVERGCMDQGIPVTISDPQTIAAVAEVLRQGRQKAVKRDSSKRL
Ga0335079_113905451	3300032783	Soil	VGRPPAGRSGTNDLKARAIAWVEQACADQNVPVKVSDPLVLEKVAELLAQGRESVSRDSSKRL
Ga0335070_101246722	3300032829	Soil	VARPPAGRSGIEDDLKARALAWVERTCLDQGVPEKLSDPLALEKIAEILTQGRQTGVRRDSSKRL
Ga0335070_103929522	3300032829	Soil	VGRPPAGRSGTSEDFDARVQAWVERTCADQGVPVKLSDPLALEQVAEILAQARQTGVKRDSSKRL
Ga0335075_102052633	3300032896	Soil	MGRQPAGRSGTSREELKARAIAWVERGCAEQGIPVEVSDPLTIQAVAEILRQGRQKAVRRDSSKRL
Ga0335071_106067692	3300032897	Soil	VGRPPAGRSGTDELKARAIAWVERTCMDQGVPVKLSDPVALAKIAEILAQGRQTGVSRDSSKRL
Ga0335072_105059622	3300032898	Soil	VARRRTGRSGADDLQARAIAWVERGCMDQGIPVEISDPLTIAKVAEVLAQGRQKAVKRDSSKRL
Ga0335072_115585761	3300032898	Soil	VARQRAGRSGVDDDLEARAMAWVERSCMDQGIPVEISDPLTIAAVAEVLAQGRKTAVKRDSSKRL
Ga0335083_102462302	3300032954	Soil	MGRQPAGRSGADDLKARAITWVEQAAAAQSVPVKLSDPLALARVAELLAQGRKTGSSRDSSKRL
Ga0335076_103635392	3300032955	Soil	VGRPPAGRSGTNDLKARAIAWVEQACADQNVPVKLSDALALDRVAELLSQGRKTGSSRDSSKRL
Ga0335084_101971782	3300033004	Soil	VGRLPARRTGADDLRARAVAWVERTCAEQGVPVKLSDPLLLAKVAELMAQGRQTGSRRDSSKRL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090729

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences