Metagenome / Metatranscriptome Family F090664

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090664
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	57 residues
Representative Sequence	MKSVNELLELFMRQAQLERAMKQPGGARVVEEQELRAVRRKLAAVPDAMKRDVGP
Number of Associated Samples	87
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	75.93 %
% of genes near scaffold ends (potentially truncated)	26.85 %
% of genes from short scaffolds (< 2000 bps)	75.93 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.63

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa (19.444 % of family members)
Environment Ontology (ENVO)	Unclassified (28.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.40% β-sheet: 0.00% Coil/Unstructured: 50.60%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.63
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.63
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF07452	CHRD	7.41
PF01661	Macro	5.56
PF00106	adh_short	4.63
PF09980	DUF2214	4.63
PF01007	IRK	3.70
PF00343	Phosphorylase	2.78
PF07043	DUF1328	2.78
PF08002	DUF1697	2.78
PF00561	Abhydrolase_1	1.85
PF04828	GFA	1.85
PF01471	PG_binding_1	1.85
PF01738	DLH	1.85
PF05433	Rick_17kDa_Anti	0.93
PF02653	BPD_transp_2	0.93
PF00171	Aldedh	0.93
PF01544	CorA	0.93
PF01568	Molydop_binding	0.93
PF00384	Molybdopterin	0.93
PF02012	BNR	0.93
PF00210	Ferritin	0.93
PF05359	DUF748	0.93
PF00990	GGDEF	0.93
PF04909	Amidohydro_2	0.93
PF08125	Mannitol_dh_C	0.93
PF13884	Peptidase_S74	0.93
PF00296	Bac_luciferase	0.93
PF02798	GST_N	0.93
PF08545	ACP_syn_III	0.93
PF03734	YkuD	0.93
PF16870	OxoGdeHyase_C	0.93
PF04228	Zn_peptidase	0.93
PF00581	Rhodanese	0.93
PF03795	YCII	0.93
PF01081	Aldolase	0.93
PF08238	Sel1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2110	O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain	Translation, ribosomal structure and biogenesis [J]	5.56
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	2.78
COG5487	Uncharacterized membrane protein YtjA, UPF0391 family	Function unknown [S]	2.78
COG3797	Uncharacterized conserved protein, DUF1697 family	Function unknown [S]	2.78
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.85
COG0800	2-keto-3-deoxy-6-phosphogluconate aldolase	Carbohydrate transport and metabolism [G]	0.93
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	0.93
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2321	Predicted metalloprotease	General function prediction only [R]	0.93
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG2982	Uncharacterized conserved protein AsmA involved in outer membrane biogenesis	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0246	Mannitol-1-phosphate/altronate dehydrogenases	Carbohydrate transport and metabolism [G]	0.93
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	0.93
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
All Organisms	root	All Organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
cellular organisms	root	All Organisms → cellular organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.48 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	10.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.70 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.85 %
Steroidobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.85 %
unclassified Steroidobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae	0.93 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.93 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.85 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.93 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.93 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Mesorhizobium sp. ORS 3359	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	1.85 %
Pyxidicoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus	0.93 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.93 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Mesorhizobium sp. ORS 3359	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	1.85 %
Pyxidicoccus xibeiensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus xibeiensis	0.93 %
Steroidobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	0.93 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10738084	Not Available	566	Open in IMG/M
3300002245\|JGIcombinedJ26739_101704535	Not Available	529	Open in IMG/M
3300004080\|Ga0062385_10929450	Not Available	579	Open in IMG/M
3300004080\|Ga0062385_11075363	Not Available	544	Open in IMG/M
3300004082\|Ga0062384_100084323	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300004091\|Ga0062387_100153031	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300004092\|Ga0062389_100070586	All Organisms → cellular organisms → Bacteria	2927	Open in IMG/M
3300004092\|Ga0062389_104106082	Not Available	547	Open in IMG/M
3300004635\|Ga0062388_101839809	Not Available	622	Open in IMG/M
3300005538\|Ga0070731_10382377	Not Available	935	Open in IMG/M
3300005541\|Ga0070733_10152852	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498	Open in IMG/M
3300005712\|Ga0070764_10757094	Not Available	601	Open in IMG/M
3300006176\|Ga0070765_100236473	Not Available	1671	Open in IMG/M
3300009665\|Ga0116135_1197893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	767	Open in IMG/M
3300009764\|Ga0116134_1169749	Not Available	765	Open in IMG/M
3300011120\|Ga0150983_16031701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	670	Open in IMG/M
3300012929\|Ga0137404_10007102	All Organisms → cellular organisms → Bacteria → Proteobacteria	7625	Open in IMG/M
3300014156\|Ga0181518_10213663	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300014168\|Ga0181534_10000339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	33716	Open in IMG/M
3300014168\|Ga0181534_10363044	Not Available	794	Open in IMG/M
3300014169\|Ga0181531_10510902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	742	Open in IMG/M
3300014201\|Ga0181537_10000324	All Organisms → cellular organisms → Bacteria → Proteobacteria	44792	Open in IMG/M
3300014201\|Ga0181537_10549398	Not Available	789	Open in IMG/M
3300014201\|Ga0181537_10854826	Not Available	617	Open in IMG/M
3300014489\|Ga0182018_10385698	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300014657\|Ga0181522_10373003	Not Available	852	Open in IMG/M
3300014658\|Ga0181519_10566538	Not Available	700	Open in IMG/M
3300014838\|Ga0182030_10000205	All Organisms → cellular organisms → Bacteria → Proteobacteria	102764	Open in IMG/M
3300017822\|Ga0187802_10231974	Not Available	712	Open in IMG/M
3300017995\|Ga0187816_10317148	Not Available	685	Open in IMG/M
3300018006\|Ga0187804_10435237	Not Available	584	Open in IMG/M
3300018035\|Ga0187875_10004055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10167	Open in IMG/M
3300018042\|Ga0187871_10026832	All Organisms → cellular organisms → Bacteria	3642	Open in IMG/M
3300018043\|Ga0187887_10528610	Not Available	696	Open in IMG/M
3300018044\|Ga0187890_10678623	Not Available	581	Open in IMG/M
3300020580\|Ga0210403_10128361	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300020580\|Ga0210403_10309182	All Organisms → cellular organisms → Bacteria → Proteobacteria	1295	Open in IMG/M
3300020582\|Ga0210395_10399425	Not Available	1034	Open in IMG/M
3300021086\|Ga0179596_10000041	All Organisms → cellular organisms → Bacteria → Proteobacteria	160583	Open in IMG/M
3300021168\|Ga0210406_10908291	Not Available	662	Open in IMG/M
3300021170\|Ga0210400_10016453	All Organisms → cellular organisms → Bacteria	5823	Open in IMG/M
3300021171\|Ga0210405_10123220	All Organisms → cellular organisms → Bacteria → Proteobacteria	2047	Open in IMG/M
3300021181\|Ga0210388_10002025	All Organisms → cellular organisms → Bacteria	15808	Open in IMG/M
3300021181\|Ga0210388_11407699	Not Available	585	Open in IMG/M
3300021401\|Ga0210393_10040481	All Organisms → cellular organisms → Bacteria	3658	Open in IMG/M
3300021420\|Ga0210394_10043540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	3946	Open in IMG/M
3300021420\|Ga0210394_10131062	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300021477\|Ga0210398_10147222	All Organisms → cellular organisms → Bacteria → Proteobacteria	1916	Open in IMG/M
3300021478\|Ga0210402_10381303	Not Available	1309	Open in IMG/M
3300021478\|Ga0210402_11090333	Not Available	726	Open in IMG/M
3300022716\|Ga0242673_1088968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	581	Open in IMG/M
3300022721\|Ga0242666_1199372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	511	Open in IMG/M
3300025504\|Ga0208356_1017561	Not Available	1566	Open in IMG/M
3300025612\|Ga0208691_1140687	Not Available	544	Open in IMG/M
3300027480\|Ga0208993_1086632	Not Available	573	Open in IMG/M
3300027567\|Ga0209115_1045813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	995	Open in IMG/M
3300027767\|Ga0209655_10034246	Not Available	1700	Open in IMG/M
3300027795\|Ga0209139_10124443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	910	Open in IMG/M
3300027884\|Ga0209275_10522305	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300027889\|Ga0209380_10285924	Not Available	969	Open in IMG/M
3300027908\|Ga0209006_10044161	All Organisms → cellular organisms → Bacteria → Proteobacteria	4013	Open in IMG/M
3300028577\|Ga0265318_10398683	Not Available	503	Open in IMG/M
3300028747\|Ga0302219_10046234	Not Available	1623	Open in IMG/M
3300028773\|Ga0302234_10101793	Not Available	1264	Open in IMG/M
3300028780\|Ga0302225_10342377	Not Available	706	Open in IMG/M
3300028801\|Ga0302226_10157714	Not Available	984	Open in IMG/M
3300028808\|Ga0302228_10064305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → unclassified Steroidobacteraceae → Steroidobacteraceae bacterium	1750	Open in IMG/M
3300028808\|Ga0302228_10351199	Not Available	657	Open in IMG/M
3300028906\|Ga0308309_11828466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	513	Open in IMG/M
3300029999\|Ga0311339_10806700	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300030046\|Ga0302305_1309557	Not Available	542	Open in IMG/M
3300030503\|Ga0311370_11726447	Not Available	640	Open in IMG/M
3300030520\|Ga0311372_12097559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. ORS 3359	657	Open in IMG/M
3300030580\|Ga0311355_10316029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1563	Open in IMG/M
3300030618\|Ga0311354_10384997	Not Available	1420	Open in IMG/M
3300030626\|Ga0210291_10408389	Not Available	945	Open in IMG/M
3300030626\|Ga0210291_11137926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	711	Open in IMG/M
3300030646\|Ga0302316_10292482	Not Available	659	Open in IMG/M
3300030737\|Ga0302310_10037684	All Organisms → cellular organisms → Bacteria	3215	Open in IMG/M
3300030760\|Ga0265762_1066373	Not Available	750	Open in IMG/M
3300030874\|Ga0265742_1019885	Not Available	567	Open in IMG/M
3300031057\|Ga0170834_108399993	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300031128\|Ga0170823_14243016	Not Available	512	Open in IMG/M
3300031231\|Ga0170824_127832517	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031233\|Ga0302307_10353345	Not Available	749	Open in IMG/M
3300031233\|Ga0302307_10674080	Not Available	519	Open in IMG/M
3300031234\|Ga0302325_10659671	Not Available	1520	Open in IMG/M
3300031236\|Ga0302324_100000448	All Organisms → cellular organisms → Bacteria → Proteobacteria	111727	Open in IMG/M
3300031236\|Ga0302324_100606333	Not Available	1569	Open in IMG/M
3300031236\|Ga0302324_100762913	Not Available	1353	Open in IMG/M
3300031708\|Ga0310686_117164658	All Organisms → cellular organisms → Bacteria → Proteobacteria	2934	Open in IMG/M
3300031708\|Ga0310686_117994668	All Organisms → cellular organisms → Bacteria → Proteobacteria	4504	Open in IMG/M
3300031708\|Ga0310686_118607295	Not Available	1841	Open in IMG/M
3300031708\|Ga0310686_118639731	Not Available	1147	Open in IMG/M
3300031715\|Ga0307476_10001663	All Organisms → cellular organisms → Bacteria → Proteobacteria	13516	Open in IMG/M
3300031715\|Ga0307476_10138833	Not Available	1740	Open in IMG/M
3300031715\|Ga0307476_10777934	Not Available	708	Open in IMG/M
3300031718\|Ga0307474_10370743	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300031823\|Ga0307478_10186724	Not Available	1662	Open in IMG/M
3300031823\|Ga0307478_10657294	All Organisms → cellular organisms → Bacteria → Proteobacteria	878	Open in IMG/M
3300031837\|Ga0302315_10446332	Not Available	712	Open in IMG/M
3300031910\|Ga0306923_10809186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1034	Open in IMG/M
3300032828\|Ga0335080_10024680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6526	Open in IMG/M
3300032895\|Ga0335074_10036517	All Organisms → cellular organisms → Bacteria	6861	Open in IMG/M
3300032896\|Ga0335075_10070892	All Organisms → cellular organisms → Bacteria → Proteobacteria	4723	Open in IMG/M
3300033828\|Ga0334850_072123	Not Available	655	Open in IMG/M
3300034163\|Ga0370515_0020918	Not Available	3010	Open in IMG/M
3300034163\|Ga0370515_0035822	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Pyxidicoccus → Pyxidicoccus xibeiensis	2227	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.15%
Aquatic	Environmental → Aquatic	25.93%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	52.78%
Freshwater	Environmental → Aquatic → Freshwater	25.93%
Peat	Environmental → Terrestrial → Peat	20.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.11%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	25.93%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.37%
Loam	Environmental → Terrestrial → Soil → Loam	10.19%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.48%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	25.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	20.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.26%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	19.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	8.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025504	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300027480	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028808	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030046	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_3	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030626	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030646	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2	Environmental	Open in IMG/M
3300030737	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031837	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033828	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P1 1-5	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_107380842	3300001593	Forest Soil	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHVVRQKLAAFPEAMKRDIAVKEHDGA*
JGIcombinedJ26739_1017045352	3300002245	Forest Soil	MKSVNELLELFMRQAQLERAMRQPGGARVIDARELEAVKQKLAAVPEAAKREAAAARP*
Ga0062385_109294501	3300004080	Bog Forest Soil	MESVNELLKLFMRQAQLERAMKQPGGARVTEERELHAVRRKLASFPEAVQRVAEMQDDDRA*
Ga0062385_110753631	3300004080	Bog Forest Soil	MKSINELLELFMRQAQLERAMKQPGGARVVEERELHAVRREIAAIPDAGAAPMN*
Ga0062384_1000843234	3300004082	Bog Forest Soil	TMKSVNELLKLFMRQAELERAMRQPGGARVTEEQELRAVRLRLAEFPEDMRRGHSHD*
Ga0062387_1001530313	3300004091	Bog Forest Soil	MKSINDLLELFMRQAQLERAMKQPGGARVVEERELHAVRSKIAAAPDAIKRDLEA*
Ga0062389_1000705861	3300004092	Bog Forest Soil	TRQAELENAMRQRGGARVTDEQELQAVKAKLASVPDAVRAAAQSKM*
Ga0062389_1041060822	3300004092	Bog Forest Soil	METVNNLLRLFMRQAELERAMKQPGGARVIDERELDRVREELAQFPEAVKHLPRVQDNERA*
Ga0062388_1018398092	3300004635	Bog Forest Soil	MKSVNELLELFTRQAELENAMRQRGGARVTDEQELQAVKAKLASVPDAVRAAAQSKM*
Ga0070731_103823772	3300005538	Surface Soil	MKSVNELLELFMRQAQIERAMRQPGGARVIDAREFETVKQKLAAVPEAVRREAAAAGP*
Ga0070733_101528522	3300005541	Surface Soil	MKSINELLELFMRQGELERAMKQPGGARVLEERELHAVRRRLAAVPESLKRDRLASR*
Ga0070764_107570941	3300005712	Soil	MKSVNELLTLFMRQAQLERAMKQPGGARVIEERELNSVRQKLAAIPGPIKRNIVAQDL*
Ga0070765_1002364732	3300006176	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPEAVKREAAAARP*
Ga0116135_11978932	3300009665	Peatland	MESINELLKLFMRQAELERAMKRPGGVRVIEERELNTVREKLARIPDAVKRASQAQDNDRV*
Ga0116134_11697491	3300009764	Peatland	MDPVNEALKLFMRQAQLERAMKQPGGARVIEEQELHAVRRKLAAFPEAMQPV
Ga0150983_160317012	3300011120	Forest Soil	MKSVNELLELFMRQAQLERAMKQPGGARVVEEQELRAVRRKLAAVPDAMKRDVGP*
Ga0137404_100071023	3300012929	Vadose Zone Soil	MKSVNELLVLFMRQAQLERAMKQRGGARVVEEQELHVLSRKLAAYPEAANGDV*
Ga0181518_102136633	3300014156	Bog	MMKSVNELLKLFMRQAELERAMRQPGGARVTQEQELHAGKQRLSEFPEDMRRGLSHD*
Ga0181534_1000033923	3300014168	Bog	MMESINEALKLFMRQAQLERAMKQPGGARVVEEHELRAVKRQLAEIPEGTRPGTEEEDHARP*
Ga0181534_103630441	3300014168	Bog	MKSVNELLELFMRQAQLERAMKQPGGARVIEEQELHQIREELATLPEAMKRDLEVRDGHSVT*
Ga0181531_105109022	3300014169	Bog	MKSINELLELFMRQAQLERAMKQPGGARVVEERELHALRRKIAAVPDALKQDLGA*
Ga0181537_1000032422	3300014201	Bog	MESVNDLLKLFMRQAQLERAMKQPGGARVTDERELNALKLKLAAYPDAMKHLAKA*
Ga0181537_105493982	3300014201	Bog	MMKSVNELLKLFMRQAELERAMRQPGGARVTQEKELHTVRQLLAEFPADMRRGPSRD*
Ga0181537_108548261	3300014201	Bog	MKSVNELLELFMRQAQLERAMKQPGGAGGVEEHELRALRDKIAALPEATKRV*
Ga0182018_103856982	3300014489	Palsa	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEKELHLVRQKLAAFPEAVKRDVAVKEHDGA*
Ga0181522_103730031	3300014657	Bog	MTMKSVNELLKLFMRQAELERAMRQPGGARVTEEQELHTVRQRLAEFPEDVRRGHSHD*
Ga0181519_105665381	3300014658	Bog	MQSVNELLELFMRQAQLERAMKQPGGARVIDAKELDAVKQKLAAFPEEAKRHAAARQ*
Ga0182030_1000020567	3300014838	Bog	MESVNELLKLFMRQAELERATKHPGGVRVIEERELKAVREKLARVPDAVKQASPGQDNDRV*
Ga0187802_102319742	3300017822	Freshwater Sediment	MESVNELSTLFMRQAQLERAMKQRGGARVTEEQELHAVRQKIAAFPESMKRVTEVQDNDR
Ga0187816_103171482	3300017995	Freshwater Sediment	MESVNELLKLFMRQAQLERAMKQPGGARVTEEQELHAVRRKLAAFPEAMKRVAEAQDNDR
Ga0187804_104352371	3300018006	Freshwater Sediment	MESVNELLKLFMRQAELERAMKQPGGARVTEEQELHAVRRKLAAFPEAMKRVAEAQDNDR
Ga0187875_100040557	3300018035	Peatland	MKSVNELLKLFMRQAELERAMRQPGGARVTQEQELHAGKQRLSEFPEDMRRGLSHD
Ga0187871_100268324	3300018042	Peatland	MESTNELLKLFMRQAELERAMKRPGGVRVIEERELNTVREKLARIPDAVKRASQAQDNDR
Ga0187887_105286102	3300018043	Peatland	MKSVNELLKLFMRQAELERAMRQPGGARVTEEQELHTVKQRLSEFPEDMRRGLSHD
Ga0187890_106786232	3300018044	Peatland	FMRQAELERAMRQPGGARVTEEQESHTVRQCLAEFPEDVRRGHSHD
Ga0210403_101283612	3300020580	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPEAVKREAAAARP
Ga0210403_103091821	3300020580	Soil	MQSVNDLLRLFMRQAELERAMKPPGGARVIDERELNRVREELAQFPEAVQHLPRVQDNER
Ga0210395_103994252	3300020582	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNRKLAAVPEAVKREAAAARP
Ga0179596_1000004114	3300021086	Vadose Zone Soil	MKSVNELLELFMRQAQLERAMKQPGGARVIEERELHAVRQELSALPEAMKHDVMSVRQ
Ga0210406_109082912	3300021168	Soil	MKSVNELLELFMRQAQLERAMRQPGGARVIDARELEAVKQKLAAVPEAAKREAAEARP
Ga0210400_100164538	3300021170	Soil	MPSVNELLELFMRQAHLERAMKQPGGARVIDARELEAVKKQLAAFPDDVKRAAAAGP
Ga0210405_101232202	3300021171	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPEAVQREAAAARP
Ga0210388_100020252	3300021181	Soil	MQSAKDVDMKTVNELLELFMRQAQLERAMKQPGGARVVEERELHAVREKIAAVPESMKRDRLASR
Ga0210388_114076992	3300021181	Soil	MKSVNELLKLFMRQAELERAMRQPGGARVTDEQELRAVRLRLAEFPEDMRRGHSND
Ga0210393_100404813	3300021401	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPDAVKREAAAARP
Ga0210394_100435403	3300021420	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPDAVKREAAAAGP
Ga0210394_101310622	3300021420	Soil	MKSVNELLELFMRQAQLERAMKQPGGARVVEEQELRAVRRKLAAVPDAMKRDVGP
Ga0210398_101472221	3300021477	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPEAVKREAAAAGP
Ga0210402_103813033	3300021478	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNQKLAAVPDAVKREAAAA
Ga0210402_110903333	3300021478	Soil	MQSVNELLELFMRQAQLERAMKQPGGARVIDARELDAVKEKLATFPDAVKRAAAAGS
Ga0242673_10889681	3300022716	Soil	VNELLELFMRQAQLERAMKQPGGARVVEERELHAVREKIAAVPESMKRDRLASR
Ga0242666_11993721	3300022721	Soil	SSCPSIRSMQSAKDVDMKTVNELLELFMRQAQLERAMKQPGGARVVEERELHAVREKIAAVPESMKRDRLASR
Ga0208356_10175612	3300025504	Arctic Peat Soil	MKTVNELLELFTRQAQLERAMRQPGGARVIDGRELEAVKQKLAAVPEAVKREAAAARP
Ga0208691_11406872	3300025612	Peatland	MESINELLKLFMRQAELERAMKRPGGVRVIEERELNTVREKLARIPDAVKRASQAQDNDR
Ga0208993_10866321	3300027480	Forest Soil	MKSVNELLKLFMRQAQLERAMKQPAGARVIEEQDLHAVRQRLAAFPNPMKRDAVVRDNDR
Ga0209115_10458132	3300027567	Forest Soil	MQSINELLELFMRQAQLERAMKQPGGARVVEERELHAVRRRLAAVPESLKRDRLASR
Ga0209655_100342463	3300027767	Bog Forest Soil	MKSVNELLKLFMRQAELERAMRQPGGARVTEEQELRAVRLRLAEFPEDMRRGHSHD
Ga0209139_101244431	3300027795	Bog Forest Soil	MKSINDLLELFMRQAQLERAMKQPGGARVVEERELHAVRSKIAAAPDAIKRDLEA
Ga0209275_105223051	3300027884	Soil	MKSVNELLELFMRQAQLERAMKQPGGARVIDERELNAVRLKLAAFPEEAKRQAAVQNS
Ga0209380_102859242	3300027889	Soil	MKSVNELLKLFMRQAELESAMRQPGGARVIEEQELHAVRQRVAGFPEEMRRRL
Ga0209006_100441616	3300027908	Forest Soil	MKSVNELLELFMRQAQLERAMRQPGGARVIDARELEAVKQKLAAVPEAAKREAAAARP
Ga0265318_103986832	3300028577	Rhizosphere	MNMKTVNELLELFMRQAQLERAMRQPGGARVIDEQQLDAVKKRLAAYPDAMKRNARVHDNDRA
Ga0302219_100462343	3300028747	Palsa	MKSVNELLKLFMRQAELERAMRQPGGARVTEEKELHTVRRRLAEFPEDMPSGPSHD
Ga0302234_101017933	3300028773	Palsa	MKSVNELLKLFMRQAELESAMRQPGGARVIEEQELHAVRQRVAGFPEEMRQKLSQP
Ga0302225_103423772	3300028780	Palsa	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHAVREKLAEFPEAMKRDIAVKEHDG
Ga0302226_101577141	3300028801	Palsa	MKSVNELLKLFMRQAELERAMRQPGGARVTEEQELHTVGQRLAEFPEDVRRGHSHD
Ga0302228_100643052	3300028808	Palsa	MKSVNELLKLFMRQAELERAMRQPGGARVTEEKELHTVRRRLAEFPEDMPS
Ga0302228_103511991	3300028808	Palsa	MKSVNELLKLFMRQAELESAMRQPGGARVIEEQELHAVRQRVAGFPEEMRQKLSQPSA
Ga0308309_118284662	3300028906	Soil	MKSINELLELFMRQAQLERAMKQPGGARVVEERELHALRRKIAVVPDALKRDLGA
Ga0311339_108067001	3300029999	Palsa	IMKSVNELLTLFMRQAQLEQAMRQRGGARVTDEHELQTVRQKLAAYPEAMKRDIAVKEHDGA
Ga0302305_13095571	3300030046	Palsa	MKSVNELLKLFMRQAELESAMRQPGGARVIEEKELHDVRQRVAGFPEEMRRKLSQPSE
Ga0311370_117264471	3300030503	Palsa	MKSINELLKLFMRQAELESAMRQPGGARVIEERELRAVSQRVAGFPEELRRKL
Ga0311372_120975591	3300030520	Palsa	MESVNELLKLFMRQGELERAMKQPGGVRVIEERELNTVREKLARIPDAVKRTSQAYGDDR
Ga0311355_103160291	3300030580	Palsa	KSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHAVREKLAEFPEAMKRDIAVKEHDGA
Ga0311354_103849973	3300030618	Palsa	EMKSVNELLKLFMRQAELESAMRQPGGARVIEEKELHDVRQRVAGFPEEMRRKLSQPSE
Ga0210291_104083892	3300030626	Soil	MKSINELLELFMRQAQLERAMKQPGGARVVEERELHTVRRKIAAVPDTLKRDALAQDGR
Ga0210291_111379262	3300030626	Soil	FVFELLELFMRQAQLERAMKQPGGARVVEERELHAVRREIAAVPGAGVAPME
Ga0302316_102924823	3300030646	Palsa	SRMMMKSVNELLKLFMRQAELERAMRQPGGARVTEEKELHTVRRRLAEFPEDMPSGPSHD
Ga0302310_100376844	3300030737	Palsa	MKSVNELLKLFMRQAELERAMRQPGGARVTEEQELHTVRQRLAEFPEDVRRGHSHD
Ga0265762_10663731	3300030760	Soil	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHVVRQKLAAFPEAMKRDIAVKEHDG
Ga0265742_10198851	3300030874	Soil	DYEQGVIMKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHVVRQKLAAFPEAMKRDIAVKEHDGA
Ga0170834_1083999931	3300031057	Forest Soil	MKSINDLLELFTRQAQLESAMRQRGGARVTDEQELQAVKAKLAAVPEAVRAAAQSKI
Ga0170823_142430162	3300031128	Forest Soil	MKSINDLLELFTRQAQLESAMRQRGGARVTDEQELQAVKAKLAAVPEAERAAAQSKI
Ga0170824_1278325172	3300031231	Forest Soil	ARQPSGYMQSVNDLLKLFMRQAQLERAMKQRGGARIVEEQELHAVRQQLASFPEALKRDAAAQES
Ga0302307_103533452	3300031233	Palsa	MKSVNELLKLFMRQAELESAMRQPGGARVIEEKELHDVRQRVAGFPEEMRRKLSQP
Ga0302307_106740801	3300031233	Palsa	MRQAELERAMRQPGGARVTEEQELHTVGQRLAEFPEDVRRGHSHD
Ga0302325_106596712	3300031234	Palsa	MESVNELLKLFMRQGELERAMKQPGGVRIIEERELNAVREKLARIPDAVKRTSQAYGDDR
Ga0302324_10000044815	3300031236	Palsa	MKSVNELLKLFMRQAKLERAMRQPDGARVTDEQELHAVRQRLATFPEDMRRGLSHD
Ga0302324_1006063332	3300031236	Palsa	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEHELQTVRQKLAAYPEAMKRDIAVKEHDG
Ga0302324_1007629132	3300031236	Palsa	MESVNELLKLFMRQGELERAMKQPGGVRVIEERELNMVREKLARIPDAVKRTSQAQGDDR
Ga0310686_1171646583	3300031708	Soil	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHAVREKLAAFPEAMKRDIAVKEHDG
Ga0310686_1179946686	3300031708	Soil	MKSVNELLTLFMRQAQLEQAMRQRGGARVTDEQELHAVRQKLAAFPEAMKRDLAVQEHDG
Ga0310686_1186072955	3300031708	Soil	MQSVNDLLRLFMRQAELERAMKQPGGARVIDERELNSVREELAQFPEAVKHLPRVQDNER
Ga0310686_1186397312	3300031708	Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDAQELEAVKQKLAAVPEAVKREAAGARP
Ga0307476_100016634	3300031715	Hardwood Forest Soil	MKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVNHKIAAVPEAVKREAAAARP
Ga0307476_101388332	3300031715	Hardwood Forest Soil	MKSINELLELFMRQGELERAMKQPGGARVLEERELHAVRRRLAAVPESMKRDRLASR
Ga0307476_107779342	3300031715	Hardwood Forest Soil	MKSVNELLELFMRQAQIERAMRQPGGARVIDAREFETVKQKLAAVPEAVRREAAAAGP
Ga0307474_103707431	3300031718	Hardwood Forest Soil	PVERQMKSVNELLGLFMRQAQLERAMRQPGGARVIDARELEAVRQKLAAVPEAVKREAAAARP
Ga0307478_101867241	3300031823	Hardwood Forest Soil	MKSVNELLKLFMRQAELERAMRQPGRARVTEEQELHAVRERLAEFPENTRRGLSHD
Ga0307478_106572941	3300031823	Hardwood Forest Soil	MKSVNELLELFTRQAELEKAMRRPGGARVTEEQELLAVKRKLAKLPEA
Ga0302315_104463322	3300031837	Palsa	NELLTLFMRQAQLEQAMRQRGGARVTDEHELQTVRQKLAAYPEAMKRDIAVKEHDGA
Ga0306923_108091862	3300031910	Soil	MKSVNELLELFMRQAELERAMRQPGGARVTEEQELHAVRQKIAKLPQAKELGS
Ga0335080_100246804	3300032828	Soil	LDSINEALKLFMRQAQLERAMKQPGGARVVEERELDAVRRRLAELPEATKTRERRKNDGA
Ga0335074_100365171	3300032895	Soil	MESVNELLKLFMRQAQLERAMKQPGGARVIEERELDRVKERLAAYPDEIKQLARGAKR
Ga0335075_100708923	3300032896	Soil	MKSVNELLRLFMRQAELERAMRQPGGARVTEEQELHTVRQRLAEFPEDMRRGLSHD
Ga0334850_072123_2_151	3300033828	Soil	LKLFMRQAELERAMRQPGGARVTEEQELHTVGQRLAEFPEDVRRGHSHD
Ga0370515_0020918_2037_2207	3300034163	Untreated Peat Soil	MKSINELLELFMRQAQLERAMKQPGGARVVEERELHAVRREIAAVPDSMRRGLASR
Ga0370515_0035822_1093_1269	3300034163	Untreated Peat Soil	MKSVNELLTLFMRQAHLERAMKQTGGARLIEERERDTVRQKVAVFPEAMKRNVVAQDV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090664

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences