Metagenome Family F090648

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090648
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	47 residues
Representative Sequence	MFDRGLMLTAQAIRRQLAAMPHELYLIRLIHQPTKRPFPGERLWT
Number of Associated Samples	97
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.06 %
% of genes near scaffold ends (potentially truncated)	91.67 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (87.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.259 % of family members)
Environment Ontology (ENVO)	Unclassified (20.370 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.778 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.10% β-sheet: 0.00% Coil/Unstructured: 58.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF16793	RepB_primase	4.63
PF01695	IstB_IS21	4.63
PF08388	GIIM	1.85
PF00436	SSB	1.85
PF03446	NAD_binding_2	0.93
PF13495	Phage_int_SAM_4	0.93
PF01120	Alpha_L_fucos	0.93
PF08448	PAS_4	0.93
PF12762	DDE_Tnp_IS1595	0.93
PF01610	DDE_Tnp_ISL3	0.93
PF13649	Methyltransf_25	0.93
PF00753	Lactamase_B	0.93
PF13366	PDDEXK_3	0.93
PF07813	LTXXQ	0.93
PF11950	DUF3467	0.93
PF02899	Phage_int_SAM_1	0.93
PF00083	Sugar_tr	0.93
PF01527	HTH_Tnp_1	0.93
PF13372	Alginate_exp	0.93
PF03069	FmdA_AmdA	0.93
PF02954	HTH_8	0.93
PF02371	Transposase_20	0.93
PF00135	COesterase	0.93
PF14659	Phage_int_SAM_3	0.93
PF02441	Flavoprotein	0.93
PF00578	AhpC-TSA	0.93
PF13459	Fer4_15	0.93
PF00903	Glyoxalase	0.93
PF13276	HTH_21	0.93
PF13376	OmdA	0.93
PF08544	GHMP_kinases_C	0.93
PF00873	ACR_tran	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	4.63
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	3.70
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	1.85
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	1.85
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	0.93
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.93
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3669	Alpha-L-fucosidase	Carbohydrate transport and metabolism [G]	0.93
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.93
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.70 %
Unclassified	root	N/A	12.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.04 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.56 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	4.63 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.93 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	2.78 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	0.93 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.78 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.78 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	12.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.11 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	2.78 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	0.93 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004082\|Ga0062384_101044309	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300004635\|Ga0062388_102013610	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300005450\|Ga0066682_10385846	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300005559\|Ga0066700_11078646	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	526	Open in IMG/M
3300005566\|Ga0066693_10131266	All Organisms → cellular organisms → Bacteria	928	Open in IMG/M
3300005575\|Ga0066702_10633738	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300005587\|Ga0066654_10775058	Not Available	542	Open in IMG/M
3300005764\|Ga0066903_108523368	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300005994\|Ga0066789_10479828	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300006046\|Ga0066652_101799962	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300006176\|Ga0070765_100902901	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300006176\|Ga0070765_101784311	Not Available	577	Open in IMG/M
3300006237\|Ga0097621_101930046	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300009011\|Ga0105251_10396068	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300009088\|Ga0099830_11211035	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300009089\|Ga0099828_11661236	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300009147\|Ga0114129_12246640	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_60_22	656	Open in IMG/M
3300009521\|Ga0116222_1509114	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009623\|Ga0116133_1037407	All Organisms → cellular organisms → Bacteria → Acidobacteria	1201	Open in IMG/M
3300009662\|Ga0105856_1004504	All Organisms → cellular organisms → Bacteria	4791	Open in IMG/M
3300009665\|Ga0116135_1006178	All Organisms → cellular organisms → Bacteria	4590	Open in IMG/M
3300009698\|Ga0116216_10276009	Not Available	1026	Open in IMG/M
3300009870\|Ga0131092_10260910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1730	Open in IMG/M
3300010043\|Ga0126380_11898918	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010048\|Ga0126373_13239430	All Organisms → cellular organisms → Bacteria → Proteobacteria	507	Open in IMG/M
3300010359\|Ga0126376_10994572	All Organisms → cellular organisms → Bacteria	838	Open in IMG/M
3300010361\|Ga0126378_10646049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1171	Open in IMG/M
3300010361\|Ga0126378_12347843	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	609	Open in IMG/M
3300010366\|Ga0126379_12761027	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300010376\|Ga0126381_101728256	All Organisms → cellular organisms → Bacteria	904	Open in IMG/M
3300010379\|Ga0136449_104012411	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300010398\|Ga0126383_13221910	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300011003\|Ga0138514_100130837	Not Available	554	Open in IMG/M
3300011271\|Ga0137393_11644030	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	531	Open in IMG/M
3300012205\|Ga0137362_11237615	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300012210\|Ga0137378_11713369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300012349\|Ga0137387_11008896	All Organisms → cellular organisms → Bacteria → Acidobacteria	597	Open in IMG/M
3300012685\|Ga0137397_10424187	All Organisms → cellular organisms → Bacteria → Acidobacteria	991	Open in IMG/M
3300012917\|Ga0137395_11237865	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012922\|Ga0137394_11243930	All Organisms → cellular organisms → Bacteria → Acidobacteria	608	Open in IMG/M
3300012971\|Ga0126369_11375637	Not Available	796	Open in IMG/M
3300012984\|Ga0164309_11629279	All Organisms → cellular organisms → Bacteria → Spirochaetes	553	Open in IMG/M
3300013297\|Ga0157378_12868740	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300014156\|Ga0181518_10438423	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300014489\|Ga0182018_10337028	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300014495\|Ga0182015_10203664	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300014657\|Ga0181522_10169422	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300014658\|Ga0181519_10902769	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300015373\|Ga0132257_100852503	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300015373\|Ga0132257_104139103	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300016319\|Ga0182033_10908694	All Organisms → cellular organisms → Bacteria → Acidobacteria	780	Open in IMG/M
3300016357\|Ga0182032_10222298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1451	Open in IMG/M
3300016357\|Ga0182032_11697359	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	551	Open in IMG/M
3300016371\|Ga0182034_10888962	Not Available	766	Open in IMG/M
3300016387\|Ga0182040_11974543	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300016404\|Ga0182037_11119097	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300017792\|Ga0163161_11337511	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300017970\|Ga0187783_10086621	All Organisms → cellular organisms → Bacteria	2308	Open in IMG/M
3300017972\|Ga0187781_10239892	All Organisms → cellular organisms → Bacteria → Proteobacteria	1282	Open in IMG/M
3300017972\|Ga0187781_10821760	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300017972\|Ga0187781_11337315	Not Available	529	Open in IMG/M
3300018019\|Ga0187874_10240021	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300018038\|Ga0187855_10635130	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300018038\|Ga0187855_10919972	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300018044\|Ga0187890_10381251	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300018062\|Ga0187784_10159730	All Organisms → cellular organisms → Bacteria	1840	Open in IMG/M
3300018088\|Ga0187771_11034531	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300018433\|Ga0066667_10888073	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300021432\|Ga0210384_10986887	Not Available	744	Open in IMG/M
3300021444\|Ga0213878_10395375	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300021444\|Ga0213878_10487609	Not Available	541	Open in IMG/M
3300021477\|Ga0210398_10053606	All Organisms → cellular organisms → Bacteria → Acidobacteria	3307	Open in IMG/M
3300022732\|Ga0224569_112918	Not Available	585	Open in IMG/M
3300025612\|Ga0208691_1016480	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300026312\|Ga0209153_1288869	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300026351\|Ga0257170_1025671	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300027625\|Ga0208044_1063381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1144	Open in IMG/M
3300027648\|Ga0209420_1179244	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300027853\|Ga0209274_10218812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	971	Open in IMG/M
3300027889\|Ga0209380_10043299	All Organisms → cellular organisms → Bacteria → Acidobacteria	2552	Open in IMG/M
3300027908\|Ga0209006_11176609	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027910\|Ga0209583_10387002	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300028906\|Ga0308309_11518832	Not Available	572	Open in IMG/M
3300029951\|Ga0311371_10757069	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300029999\|Ga0311339_10003509	All Organisms → cellular organisms → Bacteria → Acidobacteria	26410	Open in IMG/M
3300030659\|Ga0316363_10274812	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300031231\|Ga0170824_112615934	Not Available	566	Open in IMG/M
3300031545\|Ga0318541_10863028	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031576\|Ga0247727_10770636	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300031576\|Ga0247727_10905472	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300031681\|Ga0318572_10810309	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300031682\|Ga0318560_10592278	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	601	Open in IMG/M
3300031716\|Ga0310813_11082960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300031719\|Ga0306917_10011540	All Organisms → cellular organisms → Bacteria	5111	Open in IMG/M
3300031736\|Ga0318501_10128486	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1288	Open in IMG/M
3300031819\|Ga0318568_10614368	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031846\|Ga0318512_10482318	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300031885\|Ga0315285_10240649	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300031912\|Ga0306921_11021778	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	931	Open in IMG/M
3300031947\|Ga0310909_11672541	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031954\|Ga0306926_10342704	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300031954\|Ga0306926_10997374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	997	Open in IMG/M
3300032770\|Ga0335085_10603728	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300032783\|Ga0335079_10260646	All Organisms → cellular organisms → Bacteria → Acidobacteria	1903	Open in IMG/M
3300032892\|Ga0335081_10731039	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300034163\|Ga0370515_0333577	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.67%
Host-Associated	Host-Associated	7.41%
Engineered	Engineered	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.70%
Aquatic	Environmental → Aquatic	12.96%
Plants	Host-Associated → Plants	7.41%
Wastewater	Engineered → Wastewater	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.15%
Freshwater	Environmental → Aquatic → Freshwater	12.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.70%
Peat	Environmental → Terrestrial → Peat	2.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%
Cave	Environmental → Terrestrial → Cave	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.93%
Roots	Host-Associated → Plants → Roots	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.11%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.26%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.41%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.56%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.70%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.78%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.78%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.78%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.85%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.85%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.93%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Activated Sludge	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Activated Sludge	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009870	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Linkou plant	Engineered	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022732	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU1	Host-Associated	Open in IMG/M
3300025612	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300027625	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)	Environmental	Open in IMG/M
3300027648	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031885	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_36	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1010443091	3300004082	Bog Forest Soil	VFDRGLILTSQAVSRQLAAMAHELYLVRLIHHRTKRPFPGERLWTADQL
Ga0062388_1020136101	3300004635	Bog Forest Soil	VFDRGLILTSQAVSRQLAAMPHELYLVRLIHHRTKRPFPGERLWTADQLGNL
Ga0066682_103858463	3300005450	Soil	VGNLGFLLTWQAIRSQLAAMPNELYLIRLIHHQTGRPFPGERLW
Ga0066700_110786461	3300005559	Soil	MTSDARRGLILTVQAIRRQLAAMPHDLYLVRLIHNRTRRPFPGERLWNTTQLLHPATV
Ga0066693_101312661	3300005566	Soil	MDDHGLFLTWQAIRRQLAAMPHDLFLVRLIHHLTRRP
Ga0066702_106337381	3300005575	Soil	VFDLGLMLTAQAIRSQLAAMPHELYLIRLIHSLTKRPFPGERLWTADQLMHLA
Ga0066654_107750582	3300005587	Soil	MDNRGFWITLQSIRRQLSAMPNELYLIRLIHHQTQRPFPGERLWTAEQLANTATVRF
Ga0066903_1085233682	3300005764	Tropical Forest Soil	MFDRGLFLSSHAIRRQLAAMPQDLYLVRLIHHATRRAFPGERLWTAAQLGQLS
Ga0066789_104798281	3300005994	Soil	MFDRGLALTLQAIRRQLAAMPHELYLIRLIHHCTGRSFPGERLW
Ga0066652_1017999621	3300006046	Soil	MTNGFFITLTAIRRQLAAMPNELYLVRPIHGQSGRPCAGERLWSAGL
Ga0070765_1009029012	3300006176	Soil	EDRGFFLTGQAIRRQLAAMPNNLYLVRLIHSLTGRPFPGERL*
Ga0070765_1017843112	3300006176	Soil	VFDLGLMLTAQAIRGQLAAMPHELYLIRLIHGLTKRPFPG
Ga0097621_1019300462	3300006237	Miscanthus Rhizosphere	MFDRGFFLTRQAIARQLAAMPVELYLVRLIHGQRRVPLPGERLWTRSQ
Ga0105251_103960681	3300009011	Switchgrass Rhizosphere	MIDRGLMLTKQAIRRQIAAMPHDLYLVRLIHNQTRRAFPGERLWTAGQ
Ga0099830_105580401	3300009088	Vadose Zone Soil	VDNRGFFLTRQAIGSQLAAMPNELYLIRLIHHQTR
Ga0099830_112110351	3300009088	Vadose Zone Soil	VFDLGLMLTAQAIRRQLAAMPHELYLIRLIHGPTQRPFP
Ga0099828_116612361	3300009089	Vadose Zone Soil	MNDRGFFLTRYAIRRQLAAMPNELFLIRLIDSRSGNCCAGERLWTSTLLTTE
Ga0114129_122466401	3300009147	Populus Rhizosphere	MFDRGLNLTLRAVRRQIAAMPHDLYLIRLIDNQTRRAFPGERLW
Ga0116222_15091141	3300009521	Peatlands Soil	MIDHGLFVTMQAIRRQLRAMPCELYLVRLIHHATGRAFPGERVWTAQQVSQAA
Ga0116133_10374072	3300009623	Peatland	MFDRGLMLTAQAIRRQLAAMPHELYLIRLIHQPTKRPFPGERLWT
Ga0105856_10045045	3300009662	Permafrost Soil	MDDCGFFLTLQAIRRQLAAMPSELYLVRLIHHQTRNAFPGER
Ga0116135_10061785	3300009665	Peatland	MFDRGLSLTWHAVRRQLAAMPHELYLVRLIHGVTKRPYPGERLWTSPN*
Ga0116216_102760091	3300009698	Peatlands Soil	MIDRGLFVTSQAIRRQLRAMPCELYLIRLIHHATGRAFPGERVW
Ga0131092_102609102	3300009870	Activated Sludge	MHTAQAIRRHLAAMPQGLYLVRLIHSLSHRLFPGERLWTADQLLHLATIRF*
Ga0126380_118989181	3300010043	Tropical Forest Soil	MFDRGLNLTLRAVRRQIAAMPHDLYLIRLIHNQTRRAFPGERLWTA
Ga0126373_132394301	3300010048	Tropical Forest Soil	MFDRGLNLTLRAVRRQIAAMPHDLYLIRLIHNQTSRAFPGERLWTAAQLKHP
Ga0126376_109945721	3300010359	Tropical Forest Soil	MLDLGLTLTSQAIRRQLAAMPCDLYLVRLIHNLSKRPF
Ga0126378_106460493	3300010361	Tropical Forest Soil	MNDRSFFLTMQAIRRQLAAMPSELYLVRLIHQQTRRPFPGERLWTAQQ
Ga0126378_123478432	3300010361	Tropical Forest Soil	MTPEAGRRLLLTLQAIRRQLAAMPHELYLVRLIHHRTRRPFPGERLWSATQLL
Ga0126379_127610271	3300010366	Tropical Forest Soil	MFDLGLTLTSQAIRRQLAAMPCELYLVRLIHNLSKRPFPGERLWTAT
Ga0126381_1017282561	3300010376	Tropical Forest Soil	MFDRGLFLSWLAIRRQLAAMPQDLYLVRLIHHATRTAFPG
Ga0136449_1040124111	3300010379	Peatlands Soil	MIDHGLFVTMQAMRRQLRAMPCELYLVRLIHHATGRAFPGERVWTAQQVSQAAT
Ga0126383_132219102	3300010398	Tropical Forest Soil	MFDRGLNLTLRAVRRQIAAMPHDLYLIRLIHHQTRRAFPGERLWTAA
Ga0138514_1001308371	3300011003	Soil	MFDRGLFLSLRGIRRQLAAMPHDLYLVRLIHHATRAAFP
Ga0137393_116440301	3300011271	Vadose Zone Soil	MFDRGLFLSLHAIRRQLAAMPHDLYLVRLIHHVTRAAF
Ga0137362_112376151	3300012205	Vadose Zone Soil	VDNRGFFLTWQAIRSQLAAMPNELYLIRLIHHQTGRPFPGERLWTAAQLVRAATIRFL
Ga0137378_117133692	3300012210	Vadose Zone Soil	VDNRGFFLTGQAIRSQLAAMPNELYLIRLIHHQTRRPFPGERLWT
Ga0137387_110088961	3300012349	Vadose Zone Soil	MAVVDDRGFFITRQAILRQLEAMPNELYLIRLIHRQTRRPFPGERLWTAAQLVSTATVR
Ga0137397_104241873	3300012685	Vadose Zone Soil	MISGFFITLTAIRRQLAAMPNELYLVRPIHGLTGRPCAGERL
Ga0137395_112378652	3300012917	Vadose Zone Soil	MLDRGFFITQQAIRRQLAAMPHDLYLIRLIHHATRRAFPGERLWTAAQLTSAA
Ga0137394_112439301	3300012922	Vadose Zone Soil	MISGFFITLTAIRRQLAAMPNELYLVRPIHGITGRPCAGERLWSAG
Ga0126369_113756372	3300012971	Tropical Forest Soil	MTSDARRGLWLTLQAIRRQLAAMPHDLYLVRLIHHRTRRPFPGE
Ga0164309_116292792	3300012984	Soil	MFDRGLALTSQAIRRQLAAMPHELYLIRLIHHCTG
Ga0157378_128687401	3300013297	Miscanthus Rhizosphere	VDNRGFFLTWQAVRNHLAAMPNELYLVRLIHQQTGRPFPGERLWTAAQLAGAATIRFL
Ga0181518_104384231	3300014156	Bog	MFDRGFYLTLLAMRRQLAAMPHDLYLVRLVHYQTRRAFPGERLWTVAQLTHP
Ga0182018_103370281	3300014489	Palsa	VFDHGLILTAQAIRRQLAAMPHELYLIRLIHQPTQRPFPGER
Ga0182015_102036641	3300014495	Palsa	MPDPGFFLTMQAIRRQLIAMPQELYLVRLIHQASRRAFPGERLWTASQ
Ga0181522_101694221	3300014657	Bog	MIDRGLFVATQAIRRQLHAMPCELYLVRLIHHATGRA
Ga0181519_109027691	3300014658	Bog	MPDPGFFLTLQAIRRQLIAMPQELYLVRLIHQASRRAFPGGRL
Ga0132257_1008525032	3300015373	Arabidopsis Rhizosphere	MADVGFLFTSQAIRRQLAAMPSDTYLIRLIHHVTRRPFSGERIWPATQILR
Ga0132257_1041391031	3300015373	Arabidopsis Rhizosphere	MFDRGLTLTSQAIRRQLAAMPHELYLIRLIHHCTGRPFSGERLW
Ga0182033_109086941	3300016319	Soil	MNDRSFFLTLQAIRRQLAAMPSELYLVRLIHQQTRRPFPGERLWTAQQL
Ga0182032_102222984	3300016357	Soil	VNDRGFFLTLQAIRTQLAAMPNELYLIRLIHHPTRRAFPGERLWT
Ga0182032_116973591	3300016357	Soil	MNDRGFFITRHAIRRQLAAMPNVLYLIRLIHQQSRKAFPGERLWTATQLQQANAI
Ga0182034_108889621	3300016371	Soil	MFDRGLNLTLRAVRRQIAAMPHDLYLIRLIHNQTRRAFPGERL
Ga0182040_119745431	3300016387	Soil	MPDRGLFVTLQAIRRQLGAMPCELYLVRLIHHASRRAFPGERLWTATQLTHA
Ga0182037_111190971	3300016404	Soil	VVDRGLVLTSRAIARQVAAMPCELYLVRLIHHATKRAFPGERL
Ga0163161_113375112	3300017792	Switchgrass Rhizosphere	MLDRGFFLTLQAIRRQLAAMPYDLYLIRLIHHATRRAFPGERLWTSDQLTNESVVRFL
Ga0187783_100866211	3300017970	Tropical Peatland	MFDRGFHLTAQAIRRQLAGMPHDLYLVRLIHHQTRRAFPGERLWTAAQLTHPATVRFL
Ga0187781_102398922	3300017972	Tropical Peatland	MVERANACVLDRGLFLSLHAVRRQLAAMPYDLYLVRLIHQVTRRAFPGERLWTATQLI
Ga0187781_108217602	3300017972	Tropical Peatland	MFDRGFHLTAQAMRRQLAGMPYDLYLVRLIHHQTRRAFPGERLWT
Ga0187781_113373151	3300017972	Tropical Peatland	MFDRGLTLTSHAVRRQLAAMPHELYLVRLIHAASKRPFPGER
Ga0187874_102400212	3300018019	Peatland	MDDRGFFLTLHAVSKQLAAMPSELYLVRLIHAQSRCAFPGERLWRPGSW
Ga0187855_106351301	3300018038	Peatland	MFDRGLILTAQAIRRQLAAMPHELYLVRLIHQPTKRPFPGERLWTAQQLLS
Ga0187855_109199721	3300018038	Peatland	MIDHGLFVASHAIRRQLRAMPCELYLIRLIHRATGRAFPGERLWTAQQVSQ
Ga0187890_103812512	3300018044	Peatland	MFDRGLILTAQAIRRQLAAMPHELYLVRLIHQPTKTPFPGERL
Ga0187784_101597301	3300018062	Tropical Peatland	MFDRGLFLSLGAIRRQLAAMPHDLYLVRLIHHVTRTAFPGERLWTG
Ga0187771_110345311	3300018088	Tropical Peatland	VFDRGLILTAQAIRRQLAAMPHELYLIRLIHCLTKRPFPGERLWTADQLRN
Ga0066667_108880732	3300018433	Grasslands Soil	MISGFFITLTAIRRQLAAMPNELYLVRPIHGLTGRPCAGERLWSA
Ga0210384_109868871	3300021432	Soil	LGNRVFDRGLMLTAQAIRRQLAAMPHELYLIRLIHGF
Ga0213878_103953751	3300021444	Bulk Soil	MFDRGLFLTAKAIRRQLAAMPNELYLIRLIHHVTKR
Ga0213878_104876091	3300021444	Bulk Soil	VFDRGLILTSQAICRQLAAMPNELYLIRLIHHPTK
Ga0210398_100536064	3300021477	Soil	MEDRGFFLTGQAIRRQLAAMPNNLYLVRLIHSLTGRPFPGERL
Ga0224569_1129181	3300022732	Rhizosphere	VFDHGLILTAQAIRRQLAAMPHELYLIRLIHQPTHRPFPGE
Ga0208691_10164802	3300025612	Peatland	MFDRGLSLTWHAVRRQLAAMPHELYLVRLIHGVTKRPYPGERLWTSPN
Ga0209153_12888691	3300026312	Soil	MLDRGFFLTWQAMRRQLAAMPQSLYLIRLIHHATRRAFPGERLWTAAQLMSAATIGFL
Ga0257170_10256712	3300026351	Soil	ESVSDRGFFLTLHAVGRQLAAMPNELYFIRLIDHSTRRVCPGERLWDAG
Ga0208044_10633812	3300027625	Peatlands Soil	MTPDPTRGLALTLRAIRRQLDAMPHDLYLLRLIHCHTRRPLPG
Ga0209420_11792442	3300027648	Forest Soil	MIDHGLFVTIQAIRRQLHAMPWELYLVRLIHHLTGRAFPGERLWTAPQVSQAATV
Ga0209274_102188123	3300027853	Soil	MTSSPSHDLTLTMQAISRQLAAMPHDLYLLRLIHNQTRRPLPGQRLWTPA
Ga0209380_100432994	3300027889	Soil	MEDRGFFLTGQAIRRQLAAMPNDLYLVRLIHSLTGRPFPGERL
Ga0209006_111766091	3300027908	Forest Soil	GFFLTGQAIRRQLAAMPNDLYLVRLIHSLTGRPFPGERL
Ga0209583_103870023	3300027910	Watersheds	LAVVDDRGFFLTLQAIGRQLAAMPNDLYLIRLIHHPTRRAVPGERLWTATQLV
Ga0308309_115188322	3300028906	Soil	VFNRGFFLTWNAICRQLAAMPNAFYFIRLIHGVTRKPCPGERVW
Ga0311371_107570691	3300029951	Palsa	VDNRGFFLTWRAVRSHLAAMPNELYLVRLIHNLTGRPFPG
Ga0311339_1000350927	3300029999	Palsa	MIDRGLFVTTQAIRRQLRAMPWELYLVRLIHLATGRAFPGERLWTAPQIA
Ga0316363_102748121	3300030659	Peatlands Soil	MFDRGLMLTAQAIRRQLAAMPHDLYLIRLIHQPTKRPFPG
Ga0170824_1126159342	3300031231	Forest Soil	MTPDPHRGLALTLRAIRRQLDAMPHDLYLLRLIHCHTRRPLPGRRQ
Ga0318541_108630281	3300031545	Soil	MEDRGFFLTVQAIRRQLAAMPNELYLIRLIHYRTRQAFPGERLWTAEQL
Ga0247727_107706362	3300031576	Biofilm	MAVVDDRGFFLTLQAMGRQLAGMPKELYLIRLIHHQTRKAFP
Ga0247727_109054722	3300031576	Biofilm	MLMAVVDDRGFFLTLQAMGRQLAGMPKELYLIRLIHHQTRKAFP
Ga0318572_108103091	3300031681	Soil	MLDRGFFLTWRAIHRQLAAMPHDLYLVRLIHHATRRVFPGERLWTAAQLTAAATIRFL
Ga0318560_105922782	3300031682	Soil	VNDRGFFLTLQAIRTQLAAMPNELYLIRLIHHPTRRAFPGERLWTAEQLA
Ga0310813_110829601	3300031716	Soil	VDNRGVFLTRQAIRSQLAAMPNELYLIRLIHHQTHRPFPGERLWTATQ
Ga0306917_100115405	3300031719	Soil	MFDRGLFLSLNVIRRQLAAMPQDLYLVRLIHHATRTAFPG
Ga0318501_101284861	3300031736	Soil	MFDRGLFLSLLAIGRQLAAMPQDLYLVRLIHQATRTAFPGERLWSAAQLGKE
Ga0318568_106143683	3300031819	Soil	MPDRGLFVTLQAIRRQLGAMPCELYLVRLIHHASRRAFPGERLWTAT
Ga0318512_104823181	3300031846	Soil	MNDRGFFLTLQAIRKQLAAMPSELYLVRLIHQRTRKPFPGERLWTAQQLGS
Ga0315285_102406491	3300031885	Sediment	MPFMPDRGLFLSWQAIRRQLAAMPHDLYLVRLIHHATRRAFPGERLWTAAQLI
Ga0306921_110217782	3300031912	Soil	MTPDPNRGLALTLRAIRRQLDAMPHDLYLLRLIHCHTRRPLPGRR
Ga0310909_116725411	3300031947	Soil	VNDRGFFLTLQAIRTQLAAMPNQLYLVRLIHHPTGRAFPGERLWTAE
Ga0306926_103427042	3300031954	Soil	MFDRGLFLSLNVIRRQLAAMPQDLYLVRLIHHATRTAFPGERIWTAAQLSQ
Ga0306926_109973742	3300031954	Soil	MPDRGLFVTLQAIRRQLGAMPCELYLVRLIHHASRRAFPGERLWTA
Ga0335085_106037283	3300032770	Soil	MFDRGLHLTLRAVRRQIAAMPHDLYLIRLIHNRTRRAFPGERLW
Ga0335079_102606461	3300032783	Soil	MFDRGLNLTLRAVRRQLAAMPHDLYLIRLIHHQTRRAFPGERLWTAAQLTR
Ga0335081_107310392	3300032892	Soil	MDPGDGGFHLTEQAIRRQLAAMPHDRYLLRLIHSRTRRPLPGERLWTA
Ga0326728_107202552	3300033402	Peat Soil	MDDRGFFLTWHAVSKQLAAMPSNLYLVRLIHAQSRCAFPGER
Ga0370515_0333577_497_640	3300034163	Untreated Peat Soil	MFDHGLILTAQAIRRQLAAMPHELYLIRLIHQPTHRPFPGERLWTAQQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090648

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences