Metagenome Family F090596

Overview

Basic Information

• Family ID: F090596
• Family Type: Metagenome
• Number of Sequences: 108
• Average Sequence Length: 71 residues
• Representative Sequence: MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAVPPLQATWWSDFNDRISTAIARATATPGPALAALG
• Number of Associated Samples: 79
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 87.96 %
• % of genes near scaffold ends (potentially truncated): 19.44 %
• % of genes from short scaffolds (< 2000 bps): 79.63 %
• Associated GOLD sequencing projects: 73
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (87.963 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.741 % of family members)
• Environment Ontology (ENVO): Unclassified (26.852 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (27.778 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 46.00%
  β-sheet: 0.00%
  Coil/Unstructured: 54.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF08281	Sigma70_r4_2	56.48
PF03009	GDPD	12.04
PF13581	HATPase_c_2	2.78
PF13977	TetR_C_6	2.78
PF00903	Glyoxalase	2.78
PF12681	Glyoxalase_2	1.85
PF00436	SSB	0.93
PF00486	Trans_reg_C	0.93
PF00196	GerE	0.93
PF02371	Transposase_20	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0584	Glycerophosphoryl diester phosphodiesterase	Lipid transport and metabolism [I]	12.04
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	0.93
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.93
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.89 %
Unclassified	root	N/A	11.11 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.89 %
Unclassified	root	N/A	11.11 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.96 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.93 %
Unclassified	root	N/A	11.11 %

Level 4

Name	Rank	Taxonomy	Distribution
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	79.63 %
Unclassified	root	N/A	11.11 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.26 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	16.67 %
Rhizaria	clade	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria	0.93 %
Unclassified	root	N/A	11.11 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	20.37 %
Endomyxa	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa	0.93 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	4.63 %
Unclassified	root	N/A	11.11 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	16.67 %

Level 7

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.67 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.85 %
Egibacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egibacterales	3.70 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.93 %
Phytomyxea	class	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea	0.93 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3.70 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	5.56 %
Unclassified	root	N/A	11.11 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.67 %
Egibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egibacterales → Egibacteraceae	3.70 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples	1.85 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.93 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	3.70 %
Plasmodiophorida	order	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	3.70 %
Streptosporangiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis	1.85 %
Unclassified	root	N/A	11.11 %

Level 9

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Allonocardiopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.67 %
Egibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egibacterales → Egibacteraceae → Egibacter	3.70 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.85 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.93 %
Plasmodiophoridae	family	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida → Plasmodiophoridae	0.93 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	3.70 %
Thermasporomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Thermasporomyces	1.85 %
Unclassified	root	N/A	11.11 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1.85 %

Level 10

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Allonocardiopsis opalescens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis → Allonocardiopsis opalescens	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.67 %
Egibacter rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egibacterales → Egibacteraceae → Egibacter → Egibacter rhizosphaerae	3.70 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → environmental samples	1.85 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.93 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	3.70 %
Spongospora	genus	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida → Plasmodiophoridae → Spongospora	0.93 %
Thermasporomyces composti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Thermasporomyces → Thermasporomyces composti	1.85 %
Unclassified	root	N/A	11.11 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1.85 %

Level 11

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Allonocardiopsis opalescens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiales incertae sedis → Allonocardiopsis → Allonocardiopsis opalescens	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	16.67 %
Egibacter rhizosphaerae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Egibacterales → Egibacteraceae → Egibacter → Egibacter rhizosphaerae	3.70 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.93 %
Sphaerisporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Sphaerisporangium	3.70 %
Spongospora subterranea	species	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Endomyxa → Phytomyxea → Plasmodiophorida → Plasmodiophoridae → Spongospora → Spongospora subterranea	0.93 %
Thermasporomyces composti	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Thermasporomyces → Thermasporomyces composti	1.85 %
Unclassified	root	N/A	11.11 %
uncultured Corynebacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → environmental samples → uncultured Corynebacteriales bacterium	1.85 %
uncultured Friedmanniella sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella → environmental samples → uncultured Friedmanniella sp.	1.85 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300001431|F14TB_100315371	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766
3300003373|JGI25407J50210_10028003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1462
3300004463|Ga0063356_100931899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231
3300005436|Ga0070713_100664318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993
3300005471|Ga0070698_100042722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4650
3300005562|Ga0058697_10172029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	962
3300005562|Ga0058697_10354233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715
3300005981|Ga0081538_10006502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	10280
3300006196|Ga0075422_10231505	All Organisms → cellular organisms → Bacteria	770
3300006844|Ga0075428_102740250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	502

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.74%
Host-Associated	Host-Associated	34.26%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.56%
Plants	Host-Associated → Plants	34.26%
Terrestrial	Environmental → Terrestrial	60.19%

Category

Habitat	Taxonomy	Distribution
Agricultural Field	Environmental → Terrestrial → Agricultural Field	4.63%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Phylloplane	Host-Associated → Plants → Phylloplane	7.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.07%
Roots	Host-Associated → Plants → Roots	1.85%
Sediment	Environmental → Aquatic → Sediment	4.63%
Soil	Environmental → Terrestrial → Soil	55.56%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Loam	Environmental → Terrestrial → Soil → Loam	5.56%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.85%
Sand	Environmental → Terrestrial → Soil → Sand	9.26%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.07%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	7.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	4.63%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.78%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.07%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.33%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	7.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	7.41%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.33%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.63%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	14.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	12.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.74%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.93%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.78%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	1.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.85%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TB_1003153712	3300001431	Soil	MTTAGRPDLDELLATWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGV*
JGI25407J50210_100280032	3300003373	Tabebuia Heterophylla Rhizosphere	MTGPRRPDLDDLLATWARARRLPDAEADRILLAIVPAVPAPSMTWWAEFNDKLSSVITRATAAPLPAFADPW*
Ga0063356_1009318993	3300004463	Arabidopsis Thaliana Rhizosphere	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAAPPLQATWWSDFNDRISTAIARATATPGPALAALG*
Ga0070713_1006643182	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTSPPLHDLDHLLAAWADARRLPEADAERIRQAIVPPVPALEATWWSEFNSKISTTITRATAIPVPALAALQ*
Ga0070698_1000427222	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MTSPPLHDLDHLLAAWADARRLPEADAERIRQAIVPEVPALEATWWSEFNSKISTVITRATAIPVPALAALQ*
Ga0058697_101720292	3300005562	Agave	MTSSARSDLDRLLDAWASARRLPDAEAERIRQAIVPAVPTLSGTWWSDFNDRISTAIARATVTPGPALAALA*
Ga0058697_103542332	3300005562	Agave	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPPAPPLQATWWSDFNEKISTAIARATATPGPALAALA*
Ga0081538_1000650211	3300005981	Tabebuia Heterophylla Rhizosphere	MSSPAPPDLDRLLAAWAEARRLPDADAERIRLAILPPVAPLEASWWTELNGKLSAVVTRATATPVPALAALVPAN*
Ga0075422_102315052	3300006196	Populus Rhizosphere	MTNPAHHDLDQLLAAWAQAQRLPDADAERIRQAIIPPVPTLEASWWSEFNSKLSTAITRATAIPVPALAALH*
Ga0075428_1027402502	3300006844	Populus Rhizosphere	MTTAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKISTAINRATSLPVPGLAGVQ*
Ga0075421_1011058372	3300006845	Populus Rhizosphere	MTSPAAHDFDGLLATWGQARRLPDVDAERIRQAIVPAAPALAGTWWSEFNGRISATIALATVTPSPVLAALT*
Ga0075421_1013015272	3300006845	Populus Rhizosphere	MTTAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ*
Ga0075430_1006565162	3300006846	Populus Rhizosphere	MTTAGRPDLDELLAGWAQARRLPDADAERILLAIVPAVAAPSMTWWSEFNDKISTAISRATSLPVPGLAGVQ*
Ga0105679_102156893	3300007790	Soil	MTSPARQDLDQLLAAWADARRLPDADAERIRQAIVPAVPALEASWWWEFNSRLSTAIMRATATPAPALAALR*
Ga0114129_101729145	3300009147	Populus Rhizosphere	MTSQAPNDLDQLLAAWARARRLPEADAERILGAIVPAAPALPASWWFEFNSKVSAVITRATATPAPALAVLR*
Ga0126307_101262124	3300009789	Serpentine Soil	MTSQARPNLDQLLAAWAEARRLADADAARIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126307_101602753	3300009789	Serpentine Soil	MTSPARPNLDQLLTAWAEARRLPDADAERIRQTVVPADPTLSTTWWSDFNARISATIARATTTPAPALAALQ*
Ga0126307_102609981	3300009789	Serpentine Soil	MTSQARPNLDQLLVAWAEARRLADADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126307_110750571	3300009789	Serpentine Soil	MTSPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATVTPGPALAALP*
Ga0105065_10669352	3300009803	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAQRIRQAIVPAVPALEATWWSEFNSRISTAITRATATPVPALAALGA*
Ga0105067_10298322	3300009812	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAQRIRQAIVPAVPALEATWWSEFNSKLSTAITRATATPVPALAALGA*
Ga0105082_10086732	3300009814	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAERIRQAIVPAVPTLEATWWSEFNSRISTAITRATATPVPALAALGA*
Ga0105062_10965132	3300009817	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAERIRQAIVPAIPTLEATWWSEFNSKLSAAITHATATPLPALAALG*
Ga0105068_10210983	3300009836	Groundwater Sand	ELLAAWAHARRLPDADAERIRQAIVPAVPGLPATWWSEFNSKISTVITRATATPAPALAALGA*
Ga0126313_100062977	3300009840	Serpentine Soil	MTSPARPDLDQLLAAWAAARRLPDAEAERIRQAIVPPAPPLQATWWSDFNEKISTAIARATATPGPALAALA*
Ga0126313_109153162	3300009840	Serpentine Soil	MTIPARHDLDDLLAAWAHARRLPDADAERIRQAIVPAVAAPSMTWWSEFNDKISTAISRATSVPVPAL*
Ga0105074_10072311	3300010029	Groundwater Sand	MTSPAAYDLDQLLAAWAHARRLPDADAERIRLAIVPAAPTLEATWWAEFNSKLSSAIARATATPVPALAALQ*
Ga0126305_100245834	3300010036	Serpentine Soil	MTSQARPNLDQLLAAWAEARRLADADAAQIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126315_105161122	3300010038	Serpentine Soil	MTSQARPNLDQLLAAWAEARRLPDADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126312_100661943	3300010041	Serpentine Soil	MTSPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATATPGPALAALP*
Ga0126312_101450782	3300010041	Serpentine Soil	MTSQARPNLDQLLVAWAEARRLADADAARIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126311_102600011	3300010045	Serpentine Soil	MTSQARPNLDQLLVAWAEARRLADADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPA
Ga0126311_110040072	3300010045	Serpentine Soil	MTSPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATATPGPALAALA*
Ga0126306_103829761	3300010166	Serpentine Soil	MTSQARPNLDQLLATWAEARRLADADAARIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0126306_118570032	3300010166	Serpentine Soil	MTTAGRPDLDELLASWAQARRLPDADAERIRQAIVPAVAAPSMTWWSEFNDKISTAISRATALPVPGLAGVP*
Ga0126377_1000496411	3300010362	Tropical Forest Soil	MTNSAHPDLDQLLVAWAHTQRLPDADAQRIRQAIIPPVPALEGSWWSEFNHKLSTAITRATTTPVPAFAALH*
Ga0138505_1000020152	3300010999	Soil	MTIPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATATPGPALAALP*
Ga0138513_1000100812	3300011000	Soil	MTTAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLHVPGLAGVQ*
Ga0137369_100385987	3300012355	Vadose Zone Soil	MTSPAAHDLDQLLAAWAHARRLPDADAERIRQAIVPAAPTLEATWWAEFNSKLSSAIARATATPV
Ga0137368_102156793	3300012358	Vadose Zone Soil	MTTPARHDLDELLAGWAHARRLPDADAERIRQAIVPAVPTLEATWWSEFNSRISTAITRATATPVPALAALGA*
Ga0162653_1000069602	3300012937	Soil	LDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATATPGPALAALP
Ga0162651_1000204303	3300012938	Soil	MTTAGRPDLDELLTGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ*
Ga0162652_1000165212	3300012941	Soil	MTTAGRPDLDELLAGWAQARRLPDADAERILLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ*
Ga0182000_100056835	3300014487	Soil	MTSQARPNLDQLLTAWAEARRLADADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ*
Ga0182000_102918512	3300014487	Soil	MTSSARSDLDRLLDAWASARRLPDAEAERIRQAIVPAVPTLSGTWWSDFNDRISTAIARATATPGPALAALA*
Ga0182000_106614702	3300014487	Soil	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAVPPLQATWWSDFNDRISTAIARATATPGPALAALG*
Ga0182008_100703933	3300014497	Rhizosphere	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAAPPLQATWWSDFNDRISTAIARATATPGPALAALA*
Ga0190266_105127202	3300017965	Soil	MTTAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0184608_104693162	3300018028	Groundwater Sediment	MTSPARSDLDQLLTAWAEARRLPDADAERIRQAIVPADPTLSATWWSDFNARISATIARATTAPAPALAALP
Ga0184634_100114523	3300018031	Groundwater Sediment	MTTPARHDLDELLAAWAHARRLPDADAERIRQAIVPAVPALEATWWSEFNSKLSTAITRATATPVPALAALGA
Ga0184624_100735313	3300018073	Groundwater Sediment	MTSAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0184612_100444704	3300018078	Groundwater Sediment	MTTAGRPDLDELLVGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRA
Ga0184612_101614123	3300018078	Groundwater Sediment	MTTPARHDLDELLAAWAHARRLPDADAERIRQAIVPAVPALEATWWSEFNSKLSMAITRATATPVPALAALGA
Ga0190268_107585402	3300018466	Soil	MTTAGRPDLDELLATWAQARRLPDADAERIRQAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0190268_114290471	3300018466	Soil	MTTAGRPDLDRLLATWAQARRLPDADAERIRQAIVPAVAAPSMTWWSEFNDKISTAISRATSLPVPGLAGVQ
Ga0190271_133991102	3300018481	Soil	MTSNAPDDLDGLLAAWGRARRLPDAEAERIRQAIVPAAPELPATWWTEFNSMISTVITRATVTPVPALDALR
Ga0190267_107884712	3300019767	Soil	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAAPPLQATWWSDFNDRISTAIARATATPGPALAALG
Ga0190267_108580981	3300019767	Soil	QLLAMWAQTHRLADADAERIRQTIVPEDLALPATWWSDFNSKVSEVIARATAMPAPAVIAWT
Ga0210378_102428851	3300021073	Groundwater Sediment	AAWAHARRLPDADAERIRQAIVPAVPALSATWWSEFNSKISTAITRATSTPVPALAALQ
Ga0207700_113168162	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTSPPLHDLDHLLAAWADARRLPEADAERIRQAIVPPVPALEATWWSEFNSKISTTITRATAIPVPALAALQ
Ga0208710_1005492	3300026790	Soil	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPPAPPLQATWWSDFNEKISTAIARATATPGPALAALA
Ga0208475_10016362	3300027018	Soil	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAAPPLQAAWWSDFNDRISTAIARATATPGPALAALG
Ga0209879_10137123	3300027056	Groundwater Sand	MTSPAAYDLDQLLAAWAHARRLPDADAERIRLAIVPAAPTLEATWWAEFNSKLSSAIARATATPVPALAALQ
Ga0209898_10554662	3300027068	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAQRIRQAIVPAVPALEATWWSEFNSKLSTAITRATATPVPALAALGA
Ga0209574_102259022	3300027809	Agave	MTGPARSDLDRLLDAWASARRLPDAEAERIRQAIVPAVPTLSGTWWSDFNDRISTVITRATATPGPALAALAF
Ga0209382_111157401	3300027909	Populus Rhizosphere	MTSPAAHDFDGLLATWGQARRLPDVDAERIRQAIVPAAPALAGTWWSEFNGRISATIALATVTPSPVLAALT
Ga0209382_115740621	3300027909	Populus Rhizosphere	HDLDGLLAAWARARRLPDADAERIRQAIVPTAPPLAGSWWSEFNDRISATIALATATPGPAFAALT
Ga0209382_119048451	3300027909	Populus Rhizosphere	MTNPAHHDLDQLLAAWAQAQRLPDADAERIRQAIIPPVPTLEASWWSEFNSKLSTAITRATAIPVPALAALH
Ga0209859_10178773	3300027954	Groundwater Sand	MTTPARHDLDELLAAWAHARRLPDADAERIRQAIVPAVPTLEATWWSEFNSRISTAITRATATPVPALAALGA
Ga0307301_101029693	3300028719	Soil	MTTAGRLDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGV
Ga0307317_102840261	3300028720	Soil	MTSPARSDLDQLLAAWASAQRLPDAAAERIRQAIVPADPALPATWWSDFNDRISTAIAR
Ga0307319_100938772	3300028722	Soil	MTSQARPNLDQLLAAWAEARRLADADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307319_101109262	3300028722	Soil	MTSQARPNLDQLLTAWAEARRLADADAERIRQAIVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307318_100229223	3300028744	Soil	MTTAGRPDLDELLTGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0307320_103042381	3300028771	Soil	PNLDQLLAAWAEARRLADADAERIRQAVVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307287_100227581	3300028796	Soil	MTSHARPNLDQLLTAWAEARRLADADAERIRQTVLPADPTLSATWWSEFNARISATIARATTTPAPALAALQ
Ga0307287_101627522	3300028796	Soil	MTGPARHDLDELLAAWAHARRLPDADAERIRQAIVPAVPALSVTWWSEFNQKLSTAITRATATPAPALAALQ
Ga0247824_107314461	3300028809	Soil	RNPTLATAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0307278_1000018413	3300028878	Soil	MTSPARPDLDQLLAAWAEARRLPDADAERIRQAIVPADPTLSATWWSDFNARISATIARATTVPAPALAALP
Ga0307300_100175142	3300028880	Soil	MTTAGRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQGVQ
Ga0307277_100303094	3300028881	Soil	MTSPARPDLDQLLTAWAEARRLPDADAERIRQAIVPADPTLSATWWSDFNARISATIARATTAPAPALAALP
Ga0268253_100083922	3300030514	Agave	MTGHGRSDLDRLLDAWASARRLPDAEAERIRQAIVPAVPTLSGTWWSDFNDRISTVITRATATPGPALAALAF
Ga0268253_100417143	3300030514	Agave	MTGPARSDLDQLLAAWASARRLPDAEAERIRQAIVPEAPPLQGSWWTDFNDRLSTAIAR
Ga0268255_100250223	3300030516	Agave	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAVPPLQATWWSDFNDRMSTAIARATATPGPALAALG
Ga0307408_1005841882	3300031548	Rhizosphere	MTSQARPNLDQLLAAWAEARRLADADAARIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307408_1007872802	3300031548	Rhizosphere	MTSPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIARATVTPGPALAALP
Ga0307408_1016256561	3300031548	Rhizosphere	MTSPARPDLDQLLAAWAGARRLPDAEAEQIRQAIVPAVPTLQAAWWSDFNDKLSTAIARATATPGPALAALT
Ga0307405_101239192	3300031731	Rhizosphere	MTSQPRPNLDQLLTAWAEAQRLADADAERIRQAIVPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307405_101584322	3300031731	Rhizosphere	MTSPARPDLDQLLAAWAAARRLPDAEAERIRQAIVPPAPPLQATWWSDFNEKISTAIARATATPGPALAALA
Ga0307405_105699142	3300031731	Rhizosphere	DQLLAAWAQARRLPDADAERIRQAILPAVPPLSPTWWSEFNGKLSTAITRATATPAPALAALS
Ga0307405_113070202	3300031731	Rhizosphere	MTSQARPNLDQLLAAWAEARRLADADAAQIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307468_1013982432	3300031740	Hardwood Forest Soil	MTTARRPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0307410_112291411	3300031852	Rhizosphere	MTSDAPDDLDGLLAAWGRAQRLSDPEADRIRQAIVPAGPALPAAWWTEFNSMISDVITRATVTPAPALDA
Ga0307410_118902461	3300031852	Rhizosphere	TSPARSDLDRLLDAWASARRLPDAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIALATATPAPALAALP
Ga0307406_100956753	3300031901	Rhizosphere	MTSPDRPDLDQLLAAWAAARRLPDAEAERIRQAIVPAAPPLQATWWSDFNEKISTAIARATATPGPALAALA
Ga0307406_103427051	3300031901	Rhizosphere	LDQLLAVWAQTHRLADADAERIRQTIVPEDLALPATWWSDFISKLSETIARATTMPAPAIAAWT
Ga0307406_114795572	3300031901	Rhizosphere	MTSDAPDDLDGLLVAWGRAQRLSGAEADRIRQAIVPAGPALPAAWWTEFNSMISDVITRATVTPAPALDALR
Ga0307407_102169391	3300031903	Rhizosphere	MTSDAPDDLDGLLAAWGRAQRLSGAEADRIRQAIVPAGPALPAAWWTEFNSMISDVITRATVIPAPALD
Ga0307412_111385752	3300031911	Rhizosphere	QLLAAWAEARRLADADAAQIRQAVLPADPTLSATWWSDFNARISATIARATTTPAPALAALQ
Ga0307416_1000842663	3300032002	Rhizosphere	MTSPDRPDLDQLLTAWAAARRLPDAEAERIRQAIVPPAPPLQATWWSDFNEKISTAIARATATPGPALAALA
Ga0307416_1015800231	3300032002	Rhizosphere	MTRPARSDLDRLLDAWASARRLPEAEAELIRQAIVPAVPTLSGTWWSDFNDKISTAIALATATP
Ga0268251_101121183	3300032159	Agave	MTGPARSDLDRLLDAWASARRLPDAEAERIRQAIVPAVPTLSGTWWSDFNDRISTVIARATATPGPALAALT
Ga0268251_105311182	3300032159	Agave	MTGPARSDLDQLLAAWASARRLPDADAERIRQAIVPEAPPLQGSWWTDFNDRLSTAIARATATPAPALAALT
Ga0247829_100616024	3300033550	Soil	MTTAGPPDLDELLAGWAQARRLPDADAERIRLAIVPAVAAPSMTWWSEFNDKLSTAISRATSLPVPGLAGVQ
Ga0247830_106115042	3300033551	Soil	MTSQAPNDLDQLLAAWARARRLPEADAERILGAIVPAAPALPASWWFEFNSKVSAVITRATATPAPALAVLR
Ga0334911_018444_336_554	3300034131	Sub-Biocrust Soil	MTGPARPDLDQLLAAWASTRRLPDAEAERIRQAIVPAVPPLQATWWSDFNDKLSTAIARATATPGPALAALA
Ga0334913_017528_422_640	3300034172	Sub-Biocrust Soil	MTGPARSDLDQLLAAWASARRLPDADAERIRQAIVPEVPPLQGSWWVEFNDRLSTAIARATATPAPALAALT
Ga0334931_034655_227_445	3300034377	Sub-Biocrust Soil	MTGPARSDLDQLLAAWASARRLPDPEAERIRQAIVPEAPPLQGSWWTDFNDRLSTAIARATATPAPALAAVT