NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F090593

Metagenome Family F090593

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F090593
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 111 residues
Representative Sequence MLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDA
Number of Associated Samples 101
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.24 %
% of genes near scaffold ends (potentially truncated) 31.48 %
% of genes from short scaffolds (< 2000 bps) 31.48 %
Associated GOLD sequencing projects 92
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (68.519 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(12.963 % of family members)
Environment Ontology (ENVO) Unclassified
(36.111 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(58.333 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174
12MG_02386330
2ARSoilYngRDRAFT_031002
3F12B_106258362
4JGI11643J11755_117397381
5JGI1027J11758_126567901
6JGI11643J12802_122997231
7F14TB_1029415913
8Ga0062593_1001996183
9Ga0062589_1021554041
10Ga0063356_1012825262
11Ga0066680_100415042
12Ga0065715_101729733
13Ga0065705_105922331
14Ga0065707_106836531
15Ga0070670_1003772471
16Ga0070670_1014888811
17Ga0070682_1013769081
18Ga0070669_1001759071
19Ga0066686_108923332
20Ga0070662_1003726241
21Ga0070662_1016894402
22Ga0070698_1002870783
23Ga0070686_1017248811
24Ga0070695_1014883021
25Ga0070704_1001148603
26Ga0068855_1001030201
27Ga0068854_1000281321
28Ga0066656_110464482
29Ga0075422_102775551
30Ga0079222_101499901
31Ga0066660_100227251
32Ga0079220_101342381
33Ga0075428_1012611251
34Ga0075421_1015896621
35Ga0075426_112693582
36Ga0075424_1001927131
37Ga0075436_1002578652
38Ga0075419_107511791
39Ga0066710_1007642383
40Ga0105240_104134782
41Ga0105245_111523081
42Ga0075418_113094392
43Ga0066709_1000775692
44Ga0114129_101078041
45Ga0105243_108768481
46Ga0075423_114602151
47Ga0075423_119297012
48Ga0105241_115646631
49Ga0105248_133062432
50Ga0134082_102243601
51Ga0134111_101718142
52Ga0134128_129869942
53Ga0105239_129729771
54Ga0134121_100546491
55Ga0137382_102458671
56Ga0137376_101543053
57Ga0137376_108779902
58Ga0157349_10442492
59Ga0157329_10457451
60Ga0157335_10208462
61Ga0157351_10015932
62Ga0157347_10269931
63Ga0157327_10337322
64Ga0157354_10195172
65Ga0157352_10054482
66Ga0137373_110642601
67Ga0137358_104720141
68Ga0157295_100604122
69Ga0137407_103855072
70Ga0164303_104134911
71Ga0164302_101894371
72Ga0075312_10868662
73Ga0075322_10108911
74Ga0173478_102530522
75Ga0134073_100946772
76Ga0132256_1005455862
77Ga0132255_1021866002
78Ga0132255_1023096641
79Ga0132255_1056428352
80Ga0066662_124769612
81Ga0173479_102930011
82Ga0193707_10845572
83Ga0210115_10231813
84Ga0207671_111310261
85Ga0207657_107458132
86Ga0207650_118464722
87Ga0207687_110871031
88Ga0207706_103038732
89Ga0207665_110371461
90Ga0209468_11242031
91Ga0209056_100142426
92Ga0209577_105290661
93Ga0209215_10546822
94Ga0209966_11582522
95Ga0209177_100755631
96Ga0209177_104413721
97Ga0209074_100354961
98Ga0209974_101727911
99Ga0209481_103832421
100Ga0207428_112734401
101Ga0209382_114540671
102Ga0310887_109842022
103Ga0310886_103036061
104Ga0310813_109195041
105Ga0307473_104153972
106Ga0310904_104362432
107Ga0310892_110457331
108Ga0310810_111148342
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 43.28%    β-sheet: 0.00%    Coil/Unstructured: 56.72%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100MLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDASequenceα-helicesβ-strandsCoilSS Conf. scoreSignal Peptide
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
31.5%68.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Natural And Restored Wetlands
Soil
Vadose Zone Soil
Terrestrial Soil
Grasslands Soil
Unplanted Soil
Switchgrass Rhizosphere
Soil
Agricultural Soil
Soil
Grasslands Soil
Hardwood Forest Soil
Soil
Natural And Restored Wetlands
Soil
Forest Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Arabidopsis Thaliana Rhizosphere
Arabidopsis Rhizosphere
Arabidopsis Rhizosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Corn Rhizosphere
Arabidopsis Rhizosphere
Switchgrass, Maize And Mischanthus Litter
7.4%5.6%2.8%3.7%4.6%9.3%2.8%3.7%3.7%2.8%2.8%2.8%13.0%2.8%3.7%3.7%3.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
2MG_023863302170459018Switchgrass, Maize And Mischanthus LitterQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFSDDVPANLKDSLGDAFLDSRYELTTAVAPGRGGNPVPELFINGWKRLSPL
ARSoilYngRDRAFT_0310023300000042Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFIN
F12B_1062583623300000443SoilMLALDRCRHFRFSVRPKRLLARALHAAGLLVGLLISGAQADASNDTREVQLAAAFELPQLPKVPGLPSLTGPSADWREFDSFFTFVVK
JGI11643J11755_1173973813300000787SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFLTFVVKRFGDDVP
JGI1027J11758_1265679013300000789SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSAD
JGI11643J12802_1229972313300000890SoilQGLWRNSMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFLT
F14TB_10294159133300001431SoilMLALDRCRHFRFSVRPKRLLARALHAAGLLVGLLISGAQADASNDTREVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFL
Ga0062593_10019961833300004114SoilMLTLDSWRRRFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAF
Ga0062589_10215540413300004156SoilMLPLNSWRRSFHLPFTRLLKRALHASGLVFGLLICGAQADASNDKREFQLAAAFELPQLPKVPGLPSLTGPSADWRQFDAFFTFVIKRFGDDVPVNLKDSI
Ga0063356_10128252623300004463Arabidopsis Thaliana RhizosphereMLAIDSLRRLFQFRPISAQLRLLVLPAAALLLGLLISGAHADASNNTGQIQFAAAFQIPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVA
Ga0066680_1004150423300005174SoilMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPWVMLF*
Ga0065715_1017297333300005293Miscanthus RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWR
Ga0065705_1059223313300005294Switchgrass RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGN
Ga0065707_1068365313300005295Switchgrass RhizosphereMLALDSWRRPFQFRLPSTGLLARALHAAVLLIGLLIYGGQADASNETREVQLAAAFELPQLPNVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKEPLGDVFLDSRYELTSAVAPGKGGNPVPQLFI
Ga0070670_10037724713300005331Switchgrass RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAACLLLGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGN
Ga0070670_10148888113300005331Switchgrass RhizosphereMLPLNSWHRSFHLPFTRLLKRALHASGLVFGLLICGAQADASNDKREFQLAAAFDLPQLPKVPGLPSLTGPSADWRQFDAFFTFVIKRFGDDVPVNLKDSIGEAFLDSRYELTSAVAPGKGGNPVPELFI
Ga0070682_10137690813300005337Corn RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAACLLLGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAP
Ga0070669_10017590713300005353Switchgrass RhizosphereMLTFDSSRRSFKRCLKSTRLRAHLVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGQGGNPVPQLFIDGW
Ga0066686_1089233323300005446SoilMLALGSGRRPFQFPSQSMRLLAGSLHIAGLLCVWLLSYCPADASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELTTAV
Ga0070662_10037262413300005457Corn RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSF
Ga0070662_10168944023300005457Corn RhizosphereMLALDSWRRPFHFCLPSTGLLARALHAAVLLIGLLIYGGQADASNETREVQLAAAFELPQLPNVPGLPSLTGPSADWRQFDSFSTFVVKRFGDDVPA
Ga0070698_10028707833300005471Corn, Switchgrass And Miscanthus RhizosphereMLVLDSWCRHFRFSVRPKRLLARALHAAGLLIGLLISGAQADASNDTREVQLAAAFQLPQLPQIPGLPSLTGPSADW
Ga0070686_10172488113300005544Switchgrass RhizosphereMLTLDSWRRRFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLSSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNG
Ga0070695_10148830213300005545Corn, Switchgrass And Miscanthus RhizosphereMLTLDSWRRRFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLSSLTGPSADWRQFDSFF
Ga0070704_10011486033300005549Corn, Switchgrass And Miscanthus RhizosphereMRMFAEALFVAALLVVFLISDGQTAAAKDSQEVQLAAVFELPQLPKAPGLPSLTGPSADWRQFDSFFTFVVKRFGNDVPGNLKDSLGDAFLDTRYELTSAIAPGK
Ga0068855_10010302013300005563Corn RhizosphereMLTFDSSRRSFKRCLKSTRLRAHLVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGQGGN
Ga0068854_10002813213300005578Corn RhizosphereMLTFDSSRRPFKRCLKSTRLRAHLVHAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKD
Ga0066656_1104644823300006034SoilMLALDSWRRHFRFSVRPKRLLARALHAAGLLVGLLISGAQADASNDTREVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGKGG
Ga0075422_1027755513300006196Populus RhizosphereMLDLNSRRRLFQFGTPSTRLFAHTLPAAVLLLGFFISGAHGFASDKTKEVQLAAAFQLPQLPQLPGLPSALTGPSADWRQFDSFFTFVVKNFGDVVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELF
Ga0079222_1014999013300006755Agricultural SoilMLTFDSSRRPFKRCLKSTRLRAHLVHAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVK
Ga0066660_1002272513300006800SoilMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELTTAVAPGKGGNPVPELFINGWKR
Ga0079220_1013423813300006806Agricultural SoilMLVLHMWCCPFRFRLAISVLHAPALYTAALLALLICGAGADASDNTPAVQLAAAFQLPQLPQVPGLSTLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFINGW
Ga0075428_10126112513300006844Populus RhizosphereMLALDSWCRHFRFSVRPKRLLARALHAAGLLVGLLISGAQADASNDTREVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGKGGNPVPELFINGWKRLSPIMNQALPAL
Ga0075421_10158966213300006845Populus RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSF
Ga0075426_1126935823300006903Populus RhizosphereMLDLNSRRRLFQFGTPSTRLFAHTLPAAVLLLGFFISGAHGFASDKTKEVQLAAAFQLPQLPQLPGLPSALTGPSADWRQFD
Ga0075424_10019271313300006904Populus RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSPIMNQALPAL
Ga0075436_10025786523300006914Populus RhizosphereMLTFDSSRRSFKRCLKSTRLRAHLVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGQG
Ga0075419_1075117913300006969Populus RhizosphereMLALDSWCRHFRFSVRPKRLLARALHAAGLLVGLLISGAQADASNDTREVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKR
Ga0066710_10076423833300009012Grasslands SoilMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELT
Ga0105240_1041347823300009093Corn RhizosphereVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFINGWKRLSPIMNQALPALPQQ
Ga0105245_1115230813300009098Miscanthus RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGNPVPELFI
Ga0075418_1130943923300009100Populus RhizosphereMGFSDLAMDSMLTVNSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVK
Ga0066709_10007756923300009137Grasslands SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPWVMLF*
Ga0114129_1010780413300009147Populus RhizosphereMLALDSWRGWFLIRMRSRGALVRALLGAALLVGLLISGTQADTSKNTGQIQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAP
Ga0105243_1087684813300009148Miscanthus RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVV
Ga0075423_1146021513300009162Populus RhizosphereMFAEALLVATLLVVFLISDGQTAAAKDSQEVQLAAVFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGNDVPGNLKDSLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSPIINNALPALPKQTASLYSS
Ga0075423_1192970123300009162Populus RhizosphereLFAHTLRGAVLLLGFFISGAHGFTSDKTKEVQLAAAFQLPQLPQLPGLPSALTGPSADWRQFDSFFTFVVKNFGDVVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSPIMNQALPALPQQTA
Ga0105241_1156466313300009174Corn RhizosphereMLTLDSWRRRFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLSSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPL
Ga0105248_1330624323300009177Switchgrass RhizosphereMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGW
Ga0134082_1022436013300010303Grasslands SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELTTAVAPGKGGNPVPELFINGW
Ga0134111_1017181423300010329Grasslands SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELTTAVAPGKGGNPVPELFINGWKRLSPIMNKAV
Ga0134128_1298699423300010373Terrestrial SoilMLALDSWLDLFQFRPPSMRSLVRALHVAGLLVGLLISGAQADSSDNIRAVQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFL
Ga0105239_1297297713300010375Corn RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRIGD
Ga0134121_1005464913300010401Terrestrial SoilVHAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGQGGNPVPQLFIDGWKRLS
Ga0137382_1024586713300012200Vadose Zone SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLELLISGAQADASKNTREFQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGNPVPELFINGWKRLSPIMNQ
Ga0137376_1015430533300012208Vadose Zone SoilMGLCSELAMDSMFDVGSWQPAASVSVSSTPMRIFARALHVAALLVVFLISDVEADAAKDSQEVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFIVKRFGDDVPGNLKDSLGDAFLDSRY
Ga0137376_1087799023300012208Vadose Zone SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLELLISGAQADASKNTREFQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFIVKRFGDDVPG
Ga0157349_104424923300012489Unplanted SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDA
Ga0157329_104574513300012491Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFINGWKRLSPIMN
Ga0157335_102084623300012492Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLSSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSP
Ga0157351_100159323300012501Unplanted SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQIPGLPSLTGP
Ga0157347_102699313300012502Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQIPGLSSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRY
Ga0157327_103373223300012512Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDD
Ga0157354_101951723300012517Unplanted SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLD
Ga0157352_100544823300012519Unplanted SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKD
Ga0137373_1106426013300012532Vadose Zone SoilMDSMLTVDSGRRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPAN
Ga0137358_1047201413300012582Vadose Zone SoilMGLCSELAMDSMFDVGSWQPAASVSVSSTPMRIFARALHVAALLVVFLISDVEADAAKDSQEVQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFIVKRFGDDVPGNLKDSLGDAFLDSRYELTSAIAPGKGGNPVPEL
Ga0157295_1006041223300012906SoilVHAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFV
Ga0137407_1038550723300012930Vadose Zone SoilMLTLDSWRLPFQFRLPSTRLLAQTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVK
Ga0164303_1041349113300012957SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQ
Ga0164302_1018943713300012961SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYE
Ga0075312_108686623300014254Natural And Restored WetlandsMLALESWRRLFQFRLPSTRLLARALHATGLLVGLLISGAQADTSKDPRQFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDS
Ga0075322_101089113300014311Natural And Restored WetlandsMLALESWRRLFQFRLPSTRLLVRALHATGLLVGLLISGAQADTSKDPRQFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDP
Ga0173478_1025305223300015201SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVP
Ga0134073_1009467723300015356Grasslands SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDS
Ga0132256_10054558623300015372Arabidopsis RhizosphereMLTLDSWRRPFQFHLPSTQLLARTLYATGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGW
Ga0132255_10218660023300015374Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGG
Ga0132255_10230966413300015374Arabidopsis RhizosphereMLTLYSWRRRFQFRLPSTQLLTRTLYAAGLLLGLLISGVHADASKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADW
Ga0132255_10564283523300015374Arabidopsis RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYVAGLLLGLLISGAQADGSKNTREFQLAAAYQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLAD
Ga0066662_1247696123300018468Grasslands SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSANWRQFDSFFTF
Ga0173479_1029300113300019362SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKSPREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYE
Ga0193707_108455723300019881SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGNPVPELFINGWT
Ga0210115_102318133300025791Natural And Restored WetlandsMLALESWRRLFQFRLPSARLLGRALHATGLLVGLLISGAQADTSKDPRQFQLAAAFQLPQLPQVPGLPSLTGPSADW
Ga0207671_1113102613300025914Corn RhizosphereMLTFDSSRRSFKRCLKSTRLRAHLVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAP
Ga0207657_1074581323300025919Corn RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFD
Ga0207650_1184647223300025925Switchgrass RhizosphereMLTLDSWRDLFQFRLPSMRSLVRALHVAALLVGLLISGAHADASKNTREFQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAVAPGQGGNP
Ga0207687_1108710313300025927Miscanthus RhizosphereMLTFDSSRRSFKRCLKSTRLRAHLVQAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALRGPSADWRQFDSFFTFVVKRFGDD
Ga0207706_1030387323300025933Corn RhizosphereMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDS
Ga0207665_1103714613300025939Corn, Switchgrass And Miscanthus RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQIPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAF
Ga0209468_112420313300026306SoilMGFCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAALLVVFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDS
Ga0209056_1001424263300026538SoilMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPWVMLF
Ga0209577_1052906613300026552SoilMGLCSELAMDSMLTVDSGRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDSLGDAFLDSRYELTTAVAPGKGGNPVPELFINGWKR
Ga0209215_105468223300027266Forest SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGNPVPELFINGWKRLSPIMNQALPALP
Ga0209966_115825223300027695Arabidopsis Thaliana RhizosphereMLALDSRRRLFQFRLPSARLLARALHAAGLLVGLLISGAQAGAFKHAPEVQLAAAFELPQLPKVPGLPSLAGPLADWRQFDSFFTFVVK
Ga0209177_1007556313300027775Agricultural SoilMLVLRLWCRPFRFRLAILVLHAPALYTAALLALLICGAGADASDNTPAVQLAAAFQLPQLPQVPGLSTLTGPSADWRQFDSFFTFVVKRFGEDVPANLKDPLGDAFLDSRYELTS
Ga0209177_1044137213300027775Agricultural SoilMLTFDSSRRPFKRCLKSTRLRAHLVHAAALLLGLLISGAHADASNNTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRY
Ga0209074_1003549613300027787Agricultural SoilMLVLRLWCRPFRFRLAILVLHAPALYTAALLALLICGAGADASDNTPAVQLAAAFQLPQLPQVPGLSTLTGPSADWRQFDSFFTFVVKRFGEDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFINGW
Ga0209974_1017279113300027876Arabidopsis Thaliana RhizosphereMLALDSRRRPFQFRRPSTRLLARALHAAGLLSGLLISGAQAGAFKNAPEVQLAAAFELPQLPKVPGLPSLAGPSADWRQFDS
Ga0209481_1038324213300027880Populus RhizosphereMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDS
Ga0207428_1127344013300027907Populus RhizosphereMLTFDSSRRPFKRCLKSTRLRAHLVHAAALLLGLLIAGAHADASDKTGQVQFAAAFQLPQLPQVPGLPALTGPSADWRQFDSFFTFVVKRFGDDVPANLK
Ga0209382_1145406713300027909Populus RhizosphereMVHDLAMDSMLTVDSGRRPFHFRLQPRRLFTGVLHVAVLLVGFLISDGQAAASNNSRELQLAAAFELPQLPKVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANL
Ga0310887_1098420223300031547SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLADAFLDSRYELTSAIAPGKGGNPVPELFINGWKRLS
Ga0310886_1030360613300031562SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVP
Ga0310813_1091950413300031716SoilMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFF
Ga0307473_1041539723300031820Hardwood Forest SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAQADGSKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLA
Ga0310904_1043624323300031854SoilMLTLDSWRLPFQFRLPSTRLLARTLYAAGLLLGLLISGAHADASKNTREFQLAAAFQLPQLPQVPGLPSLTGPSADWRQFDSFFTFVVKRFGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFVNGWKRLSPIMNQ
Ga0310892_1104573313300031858SoilMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAVQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNPVPELFV
Ga0310810_1111483423300033412SoilMLTLGSWRRPFQFRLPSTRLLAPMLYAAGLLLGLLISGAQADASDNTRAMQLAAAFQLPQLPQIPGLPSLTGPSADWRQFDSFFTFVVKRIGDDVPANLKDPLGDAFLDSRYELTSAIAPGKGGNP


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.