Metagenome / Metatranscriptome Family F090534

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090534
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	84 residues
Representative Sequence	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSF
Number of Associated Samples	90
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.07 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	94.44 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (78.704 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (9.259 % of family members)
Environment Ontology (ENVO)	Unclassified (38.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.778 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 34.55% β-sheet: 0.00% Coil/Unstructured: 65.45%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00528	BPD_transp_1	25.00
PF03466	LysR_substrate	12.04
PF12911	OppC_N	4.63
PF00231	ATP-synt	4.63
PF01061	ABC2_membrane	1.85
PF00496	SBP_bac_5	1.85
PF04227	Indigoidine_A	0.93
PF03328	HpcH_HpaI	0.93
PF00430	ATP-synt_B	0.93
PF07690	MFS_1	0.93
PF13586	DDE_Tnp_1_2	0.93
PF02874	ATP-synt_ab_N	0.93
PF00126	HTH_1	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0224	FoF1-type ATP synthase, gamma subunit	Energy production and conversion [C]	4.63
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	0.93
COG0711	FoF1-type ATP synthase, membrane subunit b or b'	Energy production and conversion [C]	0.93
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	0.93
COG2313	Pseudouridine-5'-phosphate glycosidase (pseudoU degradation)	Nucleotide transport and metabolism [F]	0.93
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.70 %
Unclassified	root	N/A	21.30 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.70 %
Unclassified	root	N/A	21.30 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.70 %
Unclassified	root	N/A	21.30 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.26 %
Unclassified	root	N/A	21.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.78 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.93 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	59.26 %
Unclassified	root	N/A	21.30 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2.78 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.30 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11.11 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.93 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.30 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.93 %
Gaiellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales	0.93 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.93 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
Gaiellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Paracoccus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus	0.93 %
Streptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.93 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	0.93 %
Gaiella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella	0.93 %
Rhodococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Streptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium	0.93 %
Paracoccus aminophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus aminophilus	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.30 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.70 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
Gaiella occulta	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	0.93 %
Mesorhizobium sp. URHB0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHB0007	0.93 %
Rhodococcus rhodochrous	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	0.93 %
Streptosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Paracoccus aminophilus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus aminophilus	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459017\|G14TP7Y02FWUQS	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	678	Open in IMG/M
3300001305\|C688J14111_10279375	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300001534\|A15PFW1_10103963	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	564	Open in IMG/M
3300001538\|A10PFW1_10417840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1701	Open in IMG/M
3300001686\|C688J18823_10626774	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300002568\|C688J35102_118842808	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300003267\|soilL1_10187493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1890	Open in IMG/M
3300004081\|Ga0063454_100352681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	955	Open in IMG/M
3300004081\|Ga0063454_101488054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp. URHB0007	578	Open in IMG/M
3300004153\|Ga0063455_100176315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1022	Open in IMG/M
3300004153\|Ga0063455_101523964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	523	Open in IMG/M
3300005171\|Ga0066677_10811293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Rhodococcus → Rhodococcus rhodochrous	517	Open in IMG/M
3300005177\|Ga0066690_10349074	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005327\|Ga0070658_10024605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4829	Open in IMG/M
3300005338\|Ga0068868_101698949	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300005339\|Ga0070660_101711607	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005436\|Ga0070713_100483397	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300005436\|Ga0070713_101883359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	580	Open in IMG/M
3300005456\|Ga0070678_100674448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	929	Open in IMG/M
3300005468\|Ga0070707_100196386	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1967	Open in IMG/M
3300005471\|Ga0070698_101725490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300005524\|Ga0070737_10416392	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005530\|Ga0070679_100791189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	892	Open in IMG/M
3300005530\|Ga0070679_101293420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300005530\|Ga0070679_101372774	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300005533\|Ga0070734_10145035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1379	Open in IMG/M
3300005535\|Ga0070684_100204689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1798	Open in IMG/M
3300005535\|Ga0070684_100651140	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300005539\|Ga0068853_100764824	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005547\|Ga0070693_101186529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Paracoccus → Paracoccus aminophilus	586	Open in IMG/M
3300005548\|Ga0070665_100006595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11797	Open in IMG/M
3300005553\|Ga0066695_10542295	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	708	Open in IMG/M
3300005553\|Ga0066695_10672992	Not Available	610	Open in IMG/M
3300005555\|Ga0066692_10925568	Not Available	534	Open in IMG/M
3300005561\|Ga0066699_10333155	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1083	Open in IMG/M
3300005563\|Ga0068855_100960798	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300005569\|Ga0066705_10974492	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005614\|Ga0068856_101789156	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	626	Open in IMG/M
3300005614\|Ga0068856_102086452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300005834\|Ga0068851_11039184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Streptosporangiaceae → Streptosporangium → Streptosporangium roseum	518	Open in IMG/M
3300006028\|Ga0070717_11820254	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300006237\|Ga0097621_100867676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	839	Open in IMG/M
3300006804\|Ga0079221_10490174	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300006806\|Ga0079220_11021402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300006903\|Ga0075426_10832572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	695	Open in IMG/M
3300009090\|Ga0099827_11192791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	662	Open in IMG/M
3300009098\|Ga0105245_12453826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300010095\|Ga0127475_1111541	Not Available	503	Open in IMG/M
3300010142\|Ga0127483_1211714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	797	Open in IMG/M
3300010152\|Ga0126318_10828233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Gaiellales → Gaiellaceae → Gaiella → Gaiella occulta	1738	Open in IMG/M
3300010227\|Ga0136219_1012901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	849	Open in IMG/M
3300010333\|Ga0134080_10585696	Not Available	541	Open in IMG/M
3300012011\|Ga0120152_1007420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4977	Open in IMG/M
3300012011\|Ga0120152_1039613	Not Available	1593	Open in IMG/M
3300012363\|Ga0137390_10978155	Not Available	799	Open in IMG/M
3300012683\|Ga0137398_10689502	Not Available	709	Open in IMG/M
3300012930\|Ga0137407_11318887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	686	Open in IMG/M
3300012931\|Ga0153915_10508023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1378	Open in IMG/M
3300012955\|Ga0164298_10715428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	705	Open in IMG/M
3300012955\|Ga0164298_10918406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300012955\|Ga0164298_10922996	Not Available	637	Open in IMG/M
3300013100\|Ga0157373_10997891	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	625	Open in IMG/M
3300013104\|Ga0157370_10032348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5108	Open in IMG/M
3300013104\|Ga0157370_11457717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	616	Open in IMG/M
3300013105\|Ga0157369_11204021	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300013105\|Ga0157369_11841957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300014058\|Ga0120149_1109710	Not Available	742	Open in IMG/M
3300014325\|Ga0163163_11104201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	856	Open in IMG/M
3300014497\|Ga0182008_10874084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300015242\|Ga0137412_10695375	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	758	Open in IMG/M
3300015374\|Ga0132255_103882816	Not Available	635	Open in IMG/M
3300020069\|Ga0197907_10456277	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	738	Open in IMG/M
3300020069\|Ga0197907_11212941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	610	Open in IMG/M
3300020070\|Ga0206356_10148319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2363	Open in IMG/M
3300020070\|Ga0206356_10389344	Not Available	649	Open in IMG/M
3300020075\|Ga0206349_1384587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	897	Open in IMG/M
3300020081\|Ga0206354_11564555	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1025	Open in IMG/M
3300025900\|Ga0207710_10345210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	757	Open in IMG/M
3300025906\|Ga0207699_10360922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1027	Open in IMG/M
3300025906\|Ga0207699_10896446	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300025912\|Ga0207707_10118805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2310	Open in IMG/M
3300025916\|Ga0207663_11440265	Not Available	555	Open in IMG/M
3300025917\|Ga0207660_10788187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300025919\|Ga0207657_10224063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1505	Open in IMG/M
3300025939\|Ga0207665_10828039	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300025944\|Ga0207661_10999617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	770	Open in IMG/M
3300025981\|Ga0207640_12018962	Not Available	522	Open in IMG/M
3300026041\|Ga0207639_11529729	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	626	Open in IMG/M
3300026078\|Ga0207702_11736577	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300026078\|Ga0207702_12078047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	558	Open in IMG/M
3300026116\|Ga0207674_10208026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1906	Open in IMG/M
3300027765\|Ga0209073_10345841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300028792\|Ga0307504_10264381	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	635	Open in IMG/M
3300028885\|Ga0307304_10596057	Not Available	512	Open in IMG/M
3300030294\|Ga0311349_11410531	Not Available	647	Open in IMG/M
3300031232\|Ga0302323_101755793	Not Available	702	Open in IMG/M
3300031241\|Ga0265325_10087967	Not Available	1535	Open in IMG/M
3300031242\|Ga0265329_10135994	Not Available	792	Open in IMG/M
3300031247\|Ga0265340_10054925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1920	Open in IMG/M
3300031740\|Ga0307468_102420048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300031918\|Ga0311367_12213787	Not Available	527	Open in IMG/M
3300032177\|Ga0315276_10626319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1156	Open in IMG/M
3300032893\|Ga0335069_10453558	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1495	Open in IMG/M
3300032893\|Ga0335069_12717652	Not Available	509	Open in IMG/M
3300032897\|Ga0335071_11222151	Not Available	696	Open in IMG/M
3300032955\|Ga0335076_10232629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1740	Open in IMG/M
3300033513\|Ga0316628_103569238	Not Available	561	Open in IMG/M
3300034268\|Ga0372943_0987631	Not Available	561	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.44%
Host-Associated	Host-Associated	28.70%
Engineered	Engineered	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	28.70%
Aquatic	Environmental → Aquatic	2.78%
Solid Waste	Engineered → Solid Waste	0.93%
Lab Enrichment	Engineered → Lab Enrichment	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.81%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.04%
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Peat	Environmental → Terrestrial → Peat	2.78%
Roots	Host-Associated → Plants → Roots	1.85%
Grass	Engineered → Solid Waste → Grass	0.93%
Unclassified	Engineered → Lab Enrichment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.19%
Loam	Environmental → Terrestrial → Soil → Loam	24.07%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.85%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Composting	Engineered → Solid Waste → Grass → Composting	0.93%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.19%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.93%
Unclassified	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.26%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	9.26%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	7.41%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	7.41%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.63%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	4.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.78%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	2.78%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.78%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.93%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.93%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.93%
Soil	Engineered → Lab Enrichment → Unclassified → Unclassified → Unclassified → Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459017	Litter degradation ZMR4	Engineered	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001534	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A15-PF-7A)- 1 week illumina	Environmental	Open in IMG/M
3300001538	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A10-PF 4A)- 1 week illumina	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005524	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen10_05102014_R1	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300010095	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010152	Soil microbial communities from Oklahoma, USA to study soil gas exchange rates - GP-OK-ARM metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010227	Soil microbial communities from Bangor area, North Wales, UK, treated with sorgoleone, replicate 2	Engineered	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300012011	Permafrost microbial communities from Nunavut, Canada - A30_65cm_6M	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300014058	Permafrost microbial communities from Nunavut, Canada - A3_65cm_0.25M	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020069	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028885	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_185	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031241	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG	Host-Associated	Open in IMG/M
3300031242	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4ZMR_01056910	2170459017	Switchgrass, Maize And Mischanthus Litter	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWA
C688J14111_102793752	3300001305	Soil	MRRKQVFSLFMLVMGVALLVAAMSVGAATSASKKAGSAEAKKGGTLKLNEAAADFDFVDPQLAYRTDDWSMIYTTSM
A15PFW1_101039631	3300001534	Permafrost	MRKKQMLSPFMLVLGVALLVAATTVGAAGSATQRTNKAGVSKGGTLRVNEANADFDFVDPQLAYRTDDWSMLFTTAM
A10PFW1_104178403	3300001538	Permafrost	MRKKQMLSPFMLVLGVALLVAATTVGAAGSATQRTNKAGVSKGGTLRVNEANADFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKTG
C688J18823_106267741	3300001686	Soil	MRRKQVFSLFMLVMGVALLVAAMSVGAATSASKKAGSAEAKKGGTLKLNEAAADFDFVDPQLAYRTDDWSMIYTT
C688J35102_1188428081	3300002568	Soil	MRKKQVLSLFMLVMGVALLVAATTVGAASSAAKKAGSSEAKKGGTLKINEAAADFDFVDPQLAYRTDDWSMIYTTSMPLVGFP
soilL1_101874932	3300003267	Sugarcane Root And Bulk Soil	MRRKQVLSLLTLVAGIALLVAATSVGAASSATKKKGSAEARKGGTLRVNEASADFDFVDPQLAYRTD
Ga0063454_1003526812	3300004081	Soil	MRRKQVLSLFMLVMGVTMLVAAMSVGAATSAQKKAGSAEAKKGGTLKLNEANADFDFVDPQLAYRTDDWAMLNTTAMPLVGFPEKAGAAGSQLYPIG
Ga0063454_1014880541	3300004081	Soil	MRRKQLLALTMLVAGFAFLAAAFAVGGQSAAKRAGSAEALKGGTLRVNQNSADFDFTDPQIAYRTDDWEMLFATSMQLVAFPEKAGAAGSQLYPEAAT
Ga0063455_1001763152	3300004153	Soil	MGRKHVASSFMLVAGLALLVAAFAVGGASSAAKKPGSAEALKGGTLRLVMGNSDFDFVDPGLAYRVDDWSMLYTTQMLLVNFPEKAGAAGRRLQAQRRAAR
Ga0063455_1015239641	3300004153	Soil	MRRKQVFSLFMLVMGVALLVAAMSVGAATSASKKAGSAEAKKGGTLKLNEAAADFDFVDPQLAYRTDDWSMIYTTSMP
Ga0066677_108112931	3300005171	Soil	MRSRHLLSLFMLIAGVAMLVAALVVGPADSATKKAGSADALKGGTLRVNMHDADFDFVDPQLAYRTDDWSMIY
Ga0066690_103490741	3300005177	Soil	MRRKQVLSLFMLVLGVALLVAAISVGAASSSTKKAGSKEANKGGTLRLNQAESDFDFVDPQLAYRTDDWNMIYTTSMPLVGFPEKSGAAGAQLVPVG
Ga0070658_100246051	3300005327	Corn Rhizosphere	MRRKQLLSVFMLVVGAALLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAY
Ga0068868_1016989492	3300005338	Miscanthus Rhizosphere	MRRKQVLSLFMLVVGVAMLVAALSVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGFQEKAGAAGSQLAPIGAT
Ga0070660_1017116071	3300005339	Corn Rhizosphere	MRRKQVLSLFMLVLGVAMLVAAISVGAASSSSKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTT
Ga0070713_1004833972	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQMLSLFMLVLGVALLVAATTVGAASSASQRTGKAGVNKGGTLRVNENNSDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSQLYPQA
Ga0070713_1018833591	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MRKKHVASSLMLVAGLALLTAAFTVGGASSATKTPGSAEALKGGTLRLVMGSTDFDFVDPGLAYRVDDWSMLYTT
Ga0070678_1006744482	3300005456	Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSFPEKAGVAGTQLY
Ga0070707_1001963861	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQMLSLFMLVLGVALLVGAMTVGAATSATQRSGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSMLFTT
Ga0070698_1017254902	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRKKQMLSLFMLVLGVALLVAAMTVGAATSATQRTGKAGVSKGGTLRVNENSEDFDFVDPQLAYRTDDWSMLFT
Ga0070737_104163921	3300005524	Surface Soil	MRRKQVLSLFMLVLGVALLVAAMAVGGASSATKKAGSAEALRGGTLRLNENSEDFDYVDPGLAYRTDDWSMLYTVNLMLVNFPEKSGAAGS
Ga0070679_1007911892	3300005530	Corn Rhizosphere	MRRKQVLSLFMLVLGASLLVAAMTVAGASGSTTKAGSAFAKKGGTLKLNESSEDFDYVDPQIA
Ga0070679_1012934202	3300005530	Corn Rhizosphere	MRRKQLLSLFMLVMGVALLVAATTVGAAGSATKKAGSAEAKKGGTLKLNEASADFDFVDPQLAYRTDDWAMIYTTSMPLVGF
Ga0070679_1013727742	3300005530	Corn Rhizosphere	MRRKQVLSLFMLVLGAAMLVAAVSVGAASSSTKKAGSQDAKKGGTLRLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGF
Ga0070734_101450353	3300005533	Surface Soil	MRRKQVLSLAMLVGGVVLLVMAMTVGTASSATHRATGKDALRGGTLRLNQNSGDFDFVDPQLAYRTDDWGMLYTTSMQLVAFPEKTGAAGSQLYPEAASSFPTVSD
Ga0070684_1002046891	3300005535	Corn Rhizosphere	MRRKQLLSVFMLVVGAALLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAMLSTTAMQLVGFPEKAGAAGSQLYP
Ga0070684_1006511402	3300005535	Corn Rhizosphere	MRRKHLLSLFMLVVGVAMLVVAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKTG
Ga0068853_1007648242	3300005539	Corn Rhizosphere	MRRKHLLSLFMLVLGVGMLVAAVSVGVAGSAVKNSGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYTTSMPLVGFEEKTGAAG
Ga0070693_1011865291	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKHLLSLFMLVLGVGMLVAAVSVGVAGSAVKNSGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYTTSMPLVGFEEK
Ga0070665_10000659517	3300005548	Switchgrass Rhizosphere	MRRKQVLSLFMLVVGVAMLVAALSVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGF
Ga0066695_105422952	3300005553	Soil	MRKKQMLSLFMLVLGVALLVAAMTVGAATSATQRTGKAGVSKGGTLRLNENTSDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSQ
Ga0066695_106729922	3300005553	Soil	MRRKQMLSLFMLALGVALLVAAVTVGAATSATQRTGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEK
Ga0066692_109255681	3300005555	Soil	MRRKQMLSLFMLALGVALLVAAMTVGVATSATQRSGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSMPFTTAMQLVSFPEKSGAAGSQLYPQAA
Ga0066699_103331552	3300005561	Soil	MRSRHLLSLFMLIAGVAMLVAALVVGPADSATKKAGSADALKGGTLRVNMHDADFDFVDPQLAYRTDDW
Ga0068855_1009607981	3300005563	Corn Rhizosphere	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEK
Ga0066705_109744922	3300005569	Soil	MRRKQVLSLFMLVLGVALLVAAISVGAASSSTKKAGSAEAKKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLV
Ga0068856_1017891561	3300005614	Corn Rhizosphere	MRRKQYLSLFMLVLGVALLVAATTVGAATSATQKASKSGIKKGGTLKLNENAEDFDFVDPQLAY
Ga0068856_1020864521	3300005614	Corn Rhizosphere	MRRKQLLSVFMLVVGAALLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAYRT
Ga0068851_110391841	3300005834	Corn Rhizosphere	MRRKQVLSLFMLVLGVAMLVAALSVGTASSSTKRAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGFQEKAGAAGAQLVPIGATAFP
Ga0070717_118202542	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSF
Ga0097621_1008676761	3300006237	Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRT
Ga0079221_104901741	3300006804	Agricultural Soil	MRRKHLLSLFMLVLGVGMLVAAVSVGVAGSAVKKAGSAEASKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKTGAAGAQLVPQAATAFPTV
Ga0079220_110214021	3300006806	Agricultural Soil	MRRKQVLSLFMLVLGVAMLVAATTVGVAGSATKKAGSAEANKGGTLKVNKANADFDFVDPQL
Ga0075426_108325722	3300006903	Populus Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAML
Ga0099827_111927911	3300009090	Vadose Zone Soil	MRRKHVLSLFMLVLGVALLVAAISVGAASSSTKKAGSAGANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGFQEKSGA
Ga0105245_124538261	3300009098	Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSFPEKA
Ga0127475_11115411	3300010095	Grasslands Soil	MRKKQMLSLFMLVLGVALLVAAMTVGAATSATQRTGKAGVSKGGTLRVNENSEDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSQLYPQAATAFPVVSNNGKT
Ga0127483_12117141	3300010142	Grasslands Soil	MRKKQMLSLFMLVMGVALLVAATTVGAATSATHRSGKAGVSKGGTLRVNQAASDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSQ
Ga0126318_108282331	3300010152	Soil	MRKKQMLSLFMLVLGVALLVAATTVGAATSANKRAGSAEALKGGTLKINEANEDFDFVDPQLAYRTDDWSMLYTTSM*
Ga0136219_10129011	3300010227	Soil	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGXXXXXX
Ga0134080_105856961	3300010333	Grasslands Soil	MLSLFMLVMGVALLVAATTVGAAGSAVKKAGSAEAKKGGTLKLNENSEDFDFVDPQLAYRTDDWSMLFTTSAALVSFPEKSGAAGAQLYPLGAT
Ga0120152_10074201	3300012011	Permafrost	MRKKQMLSPFMLVLGVALLVAATTVGAAGSATQRTNKAGVSKGGTLRVNEANADFDFVDPQLAYRTDDWSMLFTTAMQL
Ga0120152_10396132	3300012011	Permafrost	MRSRHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAAANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKSGAAGAQLTPQAATAFPTVSSNGKVY
Ga0137390_109781551	3300012363	Vadose Zone Soil	MRRKQMLSLFMLALGVALLVAAMTVGVATSATQRSGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSML
Ga0137398_106895022	3300012683	Vadose Zone Soil	MRRKQMLSLFMLILGVALLVAAMTVGAASSATQRTGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSQLYPQAATAFP
Ga0137407_113188871	3300012930	Vadose Zone Soil	MRRKQVLSLFMLVLGVALLVAAISVGAASSSTKKAGSAEAKKGGTLKLNQAESDFDFVDPQLAYRTDDWNMIYSTSMPLVGFQEKAGAAGAQLAPIGATAFPTVSGNGKVYTFH
Ga0153915_105080231	3300012931	Freshwater Wetlands	MRRKQLLSLFMLVLGVSLLVAALTVGAASSATQRFARTHVAKGGTLKLNESSEDFDYVDPQIAYRTDDWSMLNTVAMPLVG
Ga0164298_107154281	3300012955	Soil	MRRKQVLSLFMLVLGVAMLVAAVSVGAASSSTKKAGSAEASKGGTLKLNQAESDFDFVDPQLAYRTDDWS
Ga0164298_109184062	3300012955	Soil	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSFPEKAGVA
Ga0164298_109229961	3300012955	Soil	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAEASKGGTLRLNMADADFDFVDPQLAYRTDDWSM
Ga0157373_109978912	3300013100	Corn Rhizosphere	MRRKQVLSLFMLVLGVAMLVAAISVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTD
Ga0157370_100323481	3300013104	Corn Rhizosphere	MRRKHLLSLFMLVVGVAMLVVAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIY
Ga0157370_114577172	3300013104	Corn Rhizosphere	MRRKQYLSLFMLVLGVALLVAATTVGAATSATQKASKSGIKKGGTLKLNENAEDFDFVDPQLAYRTDDW
Ga0157369_112040211	3300013105	Corn Rhizosphere	MRRKQVLSLFMLVLGASLLVAAMTVAGASGSTTKAGSAFAKKGGTLKLNESSEDFDYVDPQIAYRTDDWAMLSTTAMQLVGFPEKAGTAGTQ
Ga0157369_118419572	3300013105	Corn Rhizosphere	MRRKQLLSVFMLVLGASLLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAMLSTTAMQLVGFPEKAGAAGSQLYPVAA
Ga0120149_11097101	3300014058	Permafrost	MRSRHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAAANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYAT
Ga0163163_111042012	3300014325	Switchgrass Rhizosphere	MRRKHVLSLFMLVLGVAMLVAAISVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYR
Ga0182008_108740841	3300014497	Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAMLNLTAMPL
Ga0137412_106953751	3300015242	Vadose Zone Soil	MRKKQMLSLFMLVLGVALLVAAMTVGAASSATQRTGKAGVTKGGTLRVNEANSDFDFVDPQLAYRTDDWAMLFTTAMQLVSFPEKT
Ga0132255_1038828161	3300015374	Arabidopsis Rhizosphere	MRRKHLLSLFMLVVGVAMLVAALSVGAAGSAVKKAGSADANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYTTSMPLVGFEEKSGAAGAQLTPQA
Ga0197907_104562771	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQLLSLFMLVLGASLLVAALTVSAASGSTSKASHTHAAKGGTLKMNETLEDFDYVDPQIAYRTDDWAM
Ga0197907_112129411	3300020069	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQLLSLFMLVVGASLLVAAMSVAGASGSTDKVGHSQAVKGGTLKLNESSEDFDTVDPQIAYRTDDWAMLNTTAM
Ga0206356_101483191	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAM
Ga0206356_103893441	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKTG
Ga0206349_13845871	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQLLSLFMLVFGVSLIVAALTVTAASGSTSKAGTTHAAKGGTLKMNESAEDFDYVDPQIAYRTDDWAMLNTTSMPLVGFPEKS
Ga0206354_115645551	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAMLNLTSMPLVG
Ga0207710_103452102	3300025900	Switchgrass Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSFPEKAGVAGTQLYP
Ga0207699_103609221	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVAMLVAAVSVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTD
Ga0207699_108964462	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKQVLSLFMLVLGVALLVAALSVGAAGSATKKAGSAEALKGGTLKLNEANEDFDFVDPQLAYRTDDWAMLYTTSMQLVSFPEKAGVAGTQ
Ga0207707_101188051	3300025912	Corn Rhizosphere	MRRKHLLSLFMLVVGVAMLVVAVSVAVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEK
Ga0207663_114402651	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKHLLSLFMLVLGVGMLVAAVSVGVAGSAVKKAGSAEASKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEK
Ga0207660_107881872	3300025917	Corn Rhizosphere	MRRKQYLSLFMLVLGVALLVAATTVGAATSATQKASKSGIKKGGTLKLNENAEDFDFVDPQLAYRTDDWAMLYTTAMQL
Ga0207657_102240632	3300025919	Corn Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDWAMLNMTAMPLVGFPEKAGVAG
Ga0207665_108280391	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKHLLSLFMLVLGVGMLVAAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYTTSMPLVGFPEKAGAAGSQ
Ga0207661_109996171	3300025944	Corn Rhizosphere	MRRKQLLSVFMLVVGAALLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAYRTD
Ga0207640_120189621	3300025981	Corn Rhizosphere	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSAVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKAGAAGAQLTPQAATAF
Ga0207639_115297291	3300026041	Corn Rhizosphere	MRRKQYLSLFMLVLGVALLVAATTVGAATSATQKASKSGIKKGGTLKLNENAEDFDFVDPQLAYRTDDWAMLYTTAMQLVSFPEKTGA
Ga0207702_117365771	3300026078	Corn Rhizosphere	MRRKQLLSVFMLVVGAALLITAMTVAGASGATAKAGHSQAAKGGTLKLNESNEDFDYVDPQIAYRTDDW
Ga0207702_120780472	3300026078	Corn Rhizosphere	MRRKQVLSLFMLVLGVAMLVAAISVGAASSTTKKAGSAEAKKGGTLKLNQAESDFDFVDPQLA
Ga0207674_102080261	3300026116	Corn Rhizosphere	MRRKQVLSLFMLVLGVAFLVAATTVATAGSATKKAGSTEAAKGGTLKLNESNEDFDYVDPQIAYRTDDW
Ga0209073_103458411	3300027765	Agricultural Soil	MRRKQVLSLFMLVVGVVMLVAAISVGTASSSTKKAGSAEASKGGTLRLNQAESDFDFVDPQLAYRTDDWNMIYTTSMPLVGFPEKAGA
Ga0307504_102643812	3300028792	Soil	MRRKHVLSLFMLVLGVALLVAAISVGAASSSTKKAGSAGANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGFQEKSGAAGAQLVPIG
Ga0307304_105960571	3300028885	Soil	MRRKHLLSLFMLVVGVAMLVAAVSVGVAGSSVKKAGSAEANKGGTLRLNMADADFDFVDPQLAYRTDDWSMIYATSMPLVGFEEKTGAAG
Ga0311349_114105312	3300030294	Fen	MRRKQMLSLFMLVLGVALLVAASTVGAATSATQRTGKAGVSKGGTLRVNENTSDFDFTDPQLAYRTDDWSMLFTTAMQLVSFPEKSGAAGSELYPQAATAFPTVSKD
Ga0302323_1017557932	3300031232	Fen	MRRKQMLSLFMLVLGVALLVAATTVGAAGSATQRAGKAGVSKGGTLRVNENTSDFDFVDPQLAYRTDDWSMLYTTSMQLVGFPEKTGAAGSQLYPEAAT
Ga0265325_100879671	3300031241	Rhizosphere	MRRKQMLSLFMLVLGVALLVAATTVGAAGSATHRASKTGVNKGGTLRVNENTSDFDFTDPQLAYRTDDWSMLFTTSMQLV
Ga0265329_101359941	3300031242	Rhizosphere	MRRKQMLSLFMLVLGVALLVAATTVGAAGSATHRASKTGVNKGGTLRVNENTSDFDFTDPQLAYRTDDWSMLFTTSMQLVSFPEKTGAAGSQLYPEAA
Ga0265340_100549251	3300031247	Rhizosphere	MRKKQMLSLFMLVLGVALLVAAMTVGAASSATHRTGKAGVNKGGTLRVNQNTSDFDFVDPQLAYRTDDWSMLYTTSMQLVGFPEKTGAAGSQLYPEAAT
Ga0307468_1024200482	3300031740	Hardwood Forest Soil	MRRKQVLSLFMLVLGVALLVAAISVGAASSSTKKAGSAEANKGGTLKLNQAESDFDFVDPQLAYRTDDWSMIYTTSMPLVGFQEKSGA
Ga0311367_122137872	3300031918	Fen	MRRKQMLSLFMLVLGVALLVAASTVGAATSATQRTGKAGVSKGGTLRVNENTSDFDFTDPQLAY
Ga0315276_106263192	3300032177	Sediment	MRRKQSLSVLMLVLGVALLVAAMTVGAASSATSKAQSAGALKGGTLRVNQNSGDFDFLDPQLAYRTDDWATIFTTAMQLVSFREKAGIEGTQLYPQAATA
Ga0335069_104535581	3300032893	Soil	MRRKQVLSLFMLVMGVALLVTAMAVGGASSATKKPGSAEALKGGTLKLNENSEDFDYVDPGLAYRTD
Ga0335069_127176521	3300032893	Soil	MLSLFMLVLGVALLVAAMTVGAASSATHKATGKNALKGGTLKINENSGDFDFVDPQLAYRTDDWDVIWTTNMGLVAYPEKTGP
Ga0335071_112221511	3300032897	Soil	MRTKQVLSLFMLVGGVGLLVAALAVGGAASRTLKPGSAEALKGGTLRLVEANSDLDYVDPGLAYRTDDWTMLYAVQMLLVNFPEK
Ga0335076_102326291	3300032955	Soil	MRRKQVFSLLMLVLGVALLVAAMTVGVASSATQKVSKRGASLKGGTLRLNEAEGDFDYVDPQLQYRSDDAQLV
Ga0316628_1035692381	3300033513	Soil	MRKKQMLSLFMLVLGVALLVAATTVGAASSATHRAGTAGVNKGGTLRVNQNTSDFDFVDPQLAYRTDDWAMLFTTAMQLVSFPEKTGAAGSQLYPQAATAFPTV
Ga0372943_0987631_2_307	3300034268	Soil	MLSLFMLVLGVALLVAATTVGAATSANKRTGHAAVSKGGTLRVNMHDADFDFVDPQLAYRTDDWGMLFTTAMQLVSFPEKTGAAGSQLYPQAATAFPTVSKD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090534

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences