Metagenome Family F090493

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090493
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	64 residues
Representative Sequence	MYYPALIVFVITLIPLFFTKLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Number of Associated Samples	76
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	37.96 %
% of genes near scaffold ends (potentially truncated)	28.70 %
% of genes from short scaffolds (< 2000 bps)	70.37 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (87.037 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine (57.407 % of family members)
Environment Ontology (ENVO)	Unclassified (87.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.222 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1Ocean5-_00313310 2GOS2262_10163374 3GOS2215_101421077 4GOS2216_100653725 5GOS2216_100832944 6GOS2216_100887992 7GOS2216_101115621 8GOS2217_100868212 9GOS2217_101519671 10GOS2246_101186985 11GOScombined01_1032211661 12JGI24820J26691_100123110 13JGI26062J44793_10005766 14JGI26064J46334_10118046 15Ga0073579_10013402 16Ga0073579_10830192 17Ga0073579_13416992 18Ga0066835_100039964 19Ga0066378_100127522 20Ga0066378_100132364 21Ga0066364_100109612 22Ga0066364_101687831 23Ga0066370_102390962 24Ga0099675_11142891 25Ga0099675_16449222 26Ga0068495_16487051 27Ga0099953_102619112 28Ga0105744_10458741 29Ga0105748_102096313 30Ga0115553_10513691 31Ga0115013_101843472 32Ga0160422_102312513 33Ga0160423_101811483 34Ga0163110_100080818 35Ga0163110_100643354 36Ga0163109_100351837 37Ga0163111_100592835 38Ga0163111_105287042 39Ga0211633_10814281 40Ga0211484_10576161 41Ga0211484_10830772 42Ga0211658_10099733 43Ga0211509_11189331 44Ga0211483_101307622 45Ga0211619_10241442 46Ga0211520_10416831 47Ga0211474_10461083 48Ga0211673_10625802 49Ga0211673_10835652 50Ga0211510_10306193 51Ga0211508_10127533 52Ga0211489_102076612 53Ga0211674_100173213 54Ga0211674_100233802 55Ga0211477_101818461 56Ga0211647_100291184 57Ga0211596_100505542 58Ga0211582_101676302 59Ga0211590_101319232 60Ga0211675_101301311 61Ga0211583_100664215 62Ga0211617_100034099 63Ga0211496_100147476 64Ga0211496_103573652 65Ga0211668_102508902 66Ga0211668_103369442 67Ga0211472_101163133 68Ga0211472_102203972 69Ga0211516_103045092 70Ga0211644_100347551 71Ga0211644_101170301 72Ga0211557_100715973 73Ga0211580_103514132 74Ga0211620_102210562 75Ga0211554_101314231 76Ga0211554_101757401 77Ga0211556_104231962 78Ga0211565_100375456 79Ga0211565_104676232 80Ga0211518_100020491 81Ga0211638_103565773 82Ga0211638_105092402 83Ga0211638_105852453 84Ga0211642_100357181 85Ga0211641_104341832 86Ga0211473_100539481 87Ga0211473_103176032 88Ga0211473_104856212 89Ga0211643_100434636 90Ga0211676_1000189524 91Ga0211676_104409093 92Ga0211640_102520651 93Ga0211475_100141975 94Ga0211475_105699821 95Ga0211577_100363815 96Ga0211577_103260053 97Ga0211577_108503701 98Ga0211577_108508771 99Ga0206123_100279906 100Ga0209309_103138781 101Ga0209425_100330317 102Ga0207985_11239961 103Ga0209433_100053833 104Ga0209433_100156155 105Ga0209359_100606031 106Ga0209359_101860212 107Ga0310343_100244584 108Ga0310343_115025821
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1Ocean5-_00313310 2GOS2246_101186985 3Ga0115013_101843472 4Ga0211484_10830772 5Ga0211520_10416831 6Ga0211638_105092402 7Ga0211577_103260053
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84. 1Ocean5-_00313310 2GOS2246_101186985 3Ga0115013_101843472 4Ga0211484_10830772 5Ga0211520_10416831 6Ga0211638_105092402 7Ga0211577_103260053
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 68.75% β-sheet: 1.56% Coil/Unstructured: 29.69%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF03992	ABM	10.19
PF00561	Abhydrolase_1	9.26
PF04235	DUF418	7.41
PF00106	adh_short	5.56
PF13577	SnoaL_4	4.63
PF14815	NUDIX_4	3.70
PF01593	Amino_oxidase	1.85
PF04362	Iron_traffic	1.85
PF12697	Abhydrolase_6	1.85
PF05721	PhyH	1.85

Showing 1 to 10 of 15 entries

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COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2311	Uncharacterized membrane protein YeiB	Function unknown [S]	7.41
COG2924	Fe-S cluster biosynthesis and repair protein YggX	Posttranslational modification, protein turnover, chaperones [O]	3.70
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	1.85
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG2367	Beta-lactamase class A	Defense mechanisms [V]	1.85
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.85
COG2738	Zn-dependent membrane protease YugP	Posttranslational modification, protein turnover, chaperones [O]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	74.07 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	61.11 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Unclassified	root	N/A	12.96 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	45.37 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	45.37 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	0.93 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	45.37 %
Synechococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae	0.93 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	45.37 %
Synechococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus	0.93 %
Unclassified	root	N/A	12.96 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	45.37 %
Unclassified	root	N/A	12.96 %
unclassified Synechococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus	0.93 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	45.37 %
Synechococcus sp. NP17	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Synechococcaceae → Synechococcus → unclassified Synechococcus → Synechococcus sp. NP17	0.93 %
Unclassified	root	N/A	12.96 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559017\|JCVI_READ_755668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	991	Open in IMG/M
3300001942\|GOS2262_1016337	Not Available	2118	Open in IMG/M
3300001971\|GOS2215_10142107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1921	Open in IMG/M
3300001972\|GOS2216_10065372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1829	Open in IMG/M
3300001972\|GOS2216_10083294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1777	Open in IMG/M
3300001972\|GOS2216_10088799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	908	Open in IMG/M
3300001972\|GOS2216_10111562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	787	Open in IMG/M
3300001973\|GOS2217_10086821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1785	Open in IMG/M
3300001973\|GOS2217_10151967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1573	Open in IMG/M
3300001974\|GOS2246_10118698	All Organisms → cellular organisms → Bacteria → Proteobacteria	1809	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	1.85%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.85%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%
Oceanic	Environmental → Aquatic → Marine → Oceanic	35.19%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.78%
Unclassified	Environmental → Aquatic → Marine → Unclassified	57.41%

Habitat	Taxonomy	Distribution
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	10.19%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	57.41%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Environmental And Host-Associated	Environmental → Aquatic → Marine → Oceanic → Unclassified → Environmental And Host-Associated	0.93%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.85%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	57.41%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	19.44%
Marine	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine	3.70%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.78%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	1.85%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	1.85%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.93%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	1.85%
Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Seawater	0.93%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.93%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	5.56%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559017	Marine microbial communities from the Atlantic Ocean, for comparison studies - Ocean5 (GOS 4441573)	Environmental	Open in IMG/M
3300001942	Marine microbial communities from Polynesia - GS047	Environmental	Open in IMG/M
3300001971	Marine microbial communities from the Sargasso Sea - GS000c	Environmental	Open in IMG/M
3300001972	Marine microbial communities from the Sargasso Sea - GS000d	Environmental	Open in IMG/M
3300001973	Marine microbial communities from Bermuda, Atlantic Ocean - GS001	Environmental	Open in IMG/M
3300001974	Marine microbial communities from Upwelling, Fernandina Island, Equador - GS031	Environmental	Open in IMG/M
3300002040	GS000c - Sargasso Station 3	Environmental	Open in IMG/M
3300002176	Marine microbial communities from oxygen minimum zone in mesopelagic equatorial Pacific - METZYME_5_50m	Environmental	Open in IMG/M
3300002955	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - DCM_A/KNORR_S2/LV	Environmental	Open in IMG/M
3300003185	Marine microbial communities from the Southern Atlantic Ocean, analyzing organic carbon cycling - Surface_A/KNORR_S2/LV	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ocean5-_00313310	2166559017	Environmental And Host-Associated	MYYPALIVFVLTLIPLFFTKLLFIANWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
GOS2262_10163374	3300001942	Marine	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARIILFWGYIFGMVLPIGLVAFRDYII*
GOS2215_101421077	3300001971	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARKIIFWGYVFGMVLPIGLVAFRGYII*
GOS2216_100653725	3300001972	Marine	MYFPALLVFIITLIPLFFTNLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
GOS2216_100832944	3300001972	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGMDARMIIFWGYVFGMILPIGLVAFRGYII*
GOS2216_100887992	3300001972	Marine	MYFPAFIVFVITLIPLFFTKLLFIADRERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
GOS2216_101115621	3300001972	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYIF*
GOS2217_100868212	3300001973	Marine	MYYPALIVFVLTLIPLFFTKLLFIANWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
GOS2217_101519671	3300001973	Marine	MTWRFEMYFPAFIVFVITLIPLFFTNLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLLAFRGYII*
GOS2246_101186985	3300001974	Marine	LVLLLTLVPLLFTKFLFVADWELPKDLNGIDARMIILWGYVFGMVLPIGLVAFRDYVF*
GOScombined01_1032211661	3300002040	Marine	MYYPAFIVFVLTLIPLFFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYIF*
JGI24820J26691_100123110	3300002176	Marine	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYIX*
JGI26062J44793_10005766	3300002955	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDSNGIDARKIIFWGYVFGMILPIGLVAFRGYII*
JGI26064J46334_10118046	3300003185	Marine	MYFPAFIVFVITLIPLFFTKLLFIADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
Ga0073579_10013402	3300005239	Marine	MYYPALIVFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0073579_10830192	3300005239	Marine	MYYPALIVFVLTLIPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0073579_13416992	3300005239	Marine	MYYPGLIVFVLTLIPLLFTKFLFVAEWDRPKDENGIDARLVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0066835_100039964	3300005606	Marine	MTWRFDMYFPAFIVFVITLIPLFFTKLLFIADWERPKDLNGIDARVIIFLGYVFGMILPIGLVAFRGYII*
Ga0066378_100127522	3300005946	Marine	MYYPALIVLVITLIPLFFTKYLFIEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII*
Ga0066378_100132364	3300005946	Marine	LYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGFIV*
Ga0066364_100109612	3300005960	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYII*
Ga0066364_101687831	3300005960	Marine	MYYPALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII*
Ga0066370_102390962	3300005971	Marine	LYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARVIIFWGYVFGMILPIGLVAFRGFIV*
Ga0099675_11142891	3300006334	Marine	MYFPAFIVFVITLIPLFFTKLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
Ga0099675_16449222	3300006334	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAF
Ga0068495_16487051	3300006337	Marine	LKFDMYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYII*
Ga0099953_102619112	3300006351	Marine	MYYPALIVFVITLIPLFFTKLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII*
Ga0105744_10458741	3300007863	Estuary Water	LTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0105748_102096313	3300007992	Estuary Water	DMYYPALIVFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0115553_10513691	3300009445	Pelagic Marine	RFDMYYPALIVFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV*
Ga0115013_101843472	3300009550	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPRDENGIDARMVILWGYLFGMVLPISLVAFRDYIF*
Ga0160422_102312513	3300012919	Seawater	MYYPAFIVFVLTLVPLFFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYII*
Ga0160423_101811483	3300012920	Surface Seawater	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYII*
Ga0163110_100080818	3300012928	Surface Seawater	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDENGIDARMVILWGYLFGMVLPISLVAFRDYIF*
Ga0163110_100643354	3300012928	Surface Seawater	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVIFWGYVFGMVFPISLVAFRDYIV*
Ga0163109_100351837	3300012936	Surface Seawater	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVIPIGLVAFRDYII*
Ga0163111_100592835	3300012954	Surface Seawater	MYYPAFLVLLLTLVPLLFTKFLFVADWERPKDLNGIDARMIILWGYVFGMVLPIGLVAFRDYVF*
Ga0163111_105287042	3300012954	Surface Seawater	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVILWGYVFGMVLPISLVAFRDYIV*
Ga0211633_10814281	3300020259	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDSNGIDARKIIFWGYVFGMILPIGLVAFRGYII
Ga0211484_10576161	3300020269	Marine	AFYITIFNMYYPALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211484_10830772	3300020269	Marine	LAFYIRRFNLYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGFIV
Ga0211658_10099733	3300020274	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVILWGYVFGMVLPISLVAFRDYIV
Ga0211509_11189331	3300020276	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGYII
Ga0211483_101307622	3300020281	Marine	MCSNICYLYDLAFYITIFNMYYPALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211619_10241442	3300020288	Marine	MYYPALIVFVITLIPLFFTKYLFVEDWERPRDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211520_10416831	3300020294	Marine	MTWRFEMYFPAFIVFVITLIPLFFTNLLFVADWERPKDLNGIDARVIIFWGYVFGMVL
Ga0211474_10461083	3300020296	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGMDARMIIFWGYVFGMILPIGLVAFRGYII
Ga0211673_10625802	3300020323	Marine	MYYPAFIVFVITLIPLFFTKLLFVADWERPKDLNGIDARMIIFLGYVFGMILPIGLVAFRGYIN
Ga0211673_10835652	3300020323	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVA
Ga0211510_10306193	3300020336	Marine	MYYPAFIVFVITLIPLFFAKYLVVADWERPKDLNGMDARMIIFWGYVFGMILSIGLVAFRGYII
Ga0211508_10127533	3300020337	Marine	DMYYAAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGYII
Ga0211489_102076612	3300020366	Marine	LYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGFIV
Ga0211674_100173213	3300020368	Marine	MYYPALIVFVITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYIFGMVLPIGLVAFRGYII
Ga0211674_100233802	3300020368	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211477_101818461	3300020374	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARMIIFWGYVFGMILPIGLVAF
Ga0211647_100291184	3300020377	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDENGIDARMVILWGYLFGMVLPISLVAFRDYIF
Ga0211596_100505542	3300020384	Marine	LYYPALILFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMIVPIGLVAFRGFIV
Ga0211582_101676302	3300020386	Marine	MYYPAFLVLLLTLVPLLFTKFLFVADWERPKDLNGIDARMIILWGYVFGMVLPIGLVAFRDYVF
Ga0211590_101319232	3300020387	Marine	MYYPALIVLVITLIPLFFTKYLFIEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211675_101301311	3300020391	Marine	MYLPAFIVFVITIIPLFFTKLLFVADWERPKDLNGIDARVIIVWGYVFGMVLPIGLVAFRGYII
Ga0211583_100664215	3300020397	Marine	TLCSNICYLYDLAFYITIFNMYYPALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211617_100034099	3300020401	Marine	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYIF
Ga0211496_100147476	3300020405	Marine	LAFNIRRFNLYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMIVPIGLVAFRGFIV
Ga0211496_103573652	3300020405	Marine	LAFYITIFNMYYAALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211668_102508902	3300020406	Marine	MYYPALIVFVITLIPLFFTRYLFVADWERPKDLNGIDARMIIFWGYIFGMVLPIGLVAFRGYII
Ga0211668_103369442	3300020406	Marine	MYYPALIVFVITLIPLFFTKLLFITNWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211472_101163133	3300020409	Marine	MYYPALIVFVITLIPLFFSKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYIL
Ga0211472_102203972	3300020409	Marine	MYYLTLIVFVLSLIPLFFTKLLFITNWERPKDLNGMDARVIILWGYVFGMVLPMGLVAFRGYII
Ga0211516_103045092	3300020413	Marine	MYYPAFVVFVLTLIPLFFTKLLFIANWERPKDLKGIDARMIIFWGYVFGMVLPIGLVAFRGYII
Ga0211644_100347551	3300020416	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVILWGYVFGMVLPI
Ga0211644_101170301	3300020416	Marine	LTLIPLLFTKSLFNAEWDRPKDENGIDARMVILWGYVFGMVLPISLVAFRDYIV
Ga0211557_100715973	3300020418	Marine	LYYPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMIL
Ga0211580_103514132	3300020420	Marine	MYFPAFIVFVITLIPLFFTKLLFVANWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211620_102210562	3300020424	Marine	MYFPAFIVFVITLIPLFFTKLLFIADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211554_101314231	3300020431	Marine	MYYPALIVFVLTLVPLLFTKFLFIAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV
Ga0211554_101757401	3300020431	Marine	MYYPALIVFVLTLIPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV
Ga0211556_104231962	3300020432	Marine	LAFYITIFNMYYPALIVFVITLIPLFFTKYLFVEDWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRDLII
Ga0211565_100375456	3300020433	Marine	YPALIVFAITLIPLFFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGFIV
Ga0211565_104676232	3300020433	Marine	LYYPALIVFAITLIPLFFTKYLFIADWERPKDLNGIDARVIIFWGYVFGMILPIGLVAFRGFIV
Ga0211518_100020491	3300020440	Marine	MYYAAFIVFVITLIPLFFTKLLFIANWERPKDLNGMDARMIIFWGYVFGMILPIGLVAFRGYII
Ga0211638_103565773	3300020448	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGY
Ga0211638_105092402	3300020448	Marine	LIIRPLAIIKLIDMYYAAFIVFVITLIPLFFTKLLFAADWERPKDLNGIDARMIIIWGYVFGMVLPIGLVAFRGYII
Ga0211638_105852453	3300020448	Marine	MYFTAFIVFVVTLIPLFFAKLLFMADWERPKDLNGMDARVIIIWGYVFGMVLPIGLVAFRGYI
Ga0211642_100357181	3300020449	Marine	PLLFTKSLFSAEWDRPKDKNGIDARMVILWGYLFGMVLPISLVAFRDYIF
Ga0211641_104341832	3300020450	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVILWGYVFGMVLPISIVAFRDYIV
Ga0211473_100539481	3300020451	Marine	VFVITLIPLFFTKLLFIANWERPKDSNGIDARKIIFWGYVFGMILPIGLVAFRGYII
Ga0211473_103176032	3300020451	Marine	VFVITLIPLFFTKLLFIANWERPKDLNGIDARKIIFWGYVFGMVLPIGLVAFRGYII
Ga0211473_104856212	3300020451	Marine	MYFPALIVFIITLIPLFFTNLLFVADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211643_100434636	3300020457	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMIILWGYVFGMVLPISLVAFRDYIV
Ga0211676_1000189524	3300020463	Marine	MYYPAFIVFVLTLFPLIFVKYLFRANWERPKDENGIDARMIILWGYIFGMVLPISIVAFRDYIFR
Ga0211676_104409093	3300020463	Marine	MFYPAFIVFVVTLIPLFFTKFLFVADWERPEDLNGIDARMIIFWGYVFGMVLPI
Ga0211640_102520651	3300020465	Marine	MYFPAFIIFVLTLIPLLFAKSLFSAEWDRPKDENGIDARMVILWGYLFGMVLPISLVAFRDYIF
Ga0211475_100141975	3300020468	Marine	MYYPALIVFVLTIIPLFFTKLLFVADWKRPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII
Ga0211475_105699821	3300020468	Marine	MYYPAFVVFVITLIPLFFSKLLFIANWERPKDSNGIDARKIIFWGYVFGMVLPIGLVAFRGYII
Ga0211577_100363815	3300020469	Marine	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDSNGIDARKIIFWGYVFGMVLPIGLVAFRGYII
Ga0211577_103260053	3300020469	Marine	LIPLFFIKFLFIANWERPKDLNGIDARMIIFWGYVFGMVLPIGLVVFKGYFI
Ga0211577_108503701	3300020469	Marine	YPAFIVFVVTLIPLFFTKFLFVADWGRPKDLNGIDARMIIFWGYVFGMVMPIGLVAFRDYII
Ga0211577_108508771	3300020469	Marine	YPAFIVFVVTLIPLFFTKFLFVADWERPEDLNGIDARMIIFWGYVFGMVLPIGLAAFRGYII
Ga0206123_100279906	3300021365	Seawater	MYYPALIVFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV
Ga0209309_103138781	3300025881	Pelagic Marine	VFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFRDFIV
Ga0209425_100330317	3300025897	Pelagic Marine	MYYPALIVFVLTLVPLLFTKFLFVAEWDRPKDENGIDARVVIFWGYVFGMVLPIGLVAFR
Ga0207985_11239961	3300026203	Marine	MYFPAFIVFVITLIPLFFTKLLFIADWERPKDLNGIDARVIIFLGYVFGMILPIGLVAFRGYII
Ga0209433_100053833	3300027774	Marine	MYYPAFIVFVLTLVPLIFTKFLFIADWERPKDLNGIDARMILFWGYIFGMVLPIGLVAFRDYII
Ga0209433_100156155	3300027774	Marine	MYFPAFIIFVLTLIPLLFTKSLFSAEWDRPKDKNGIDARMVILWGYVFGMVFPISLVAFRDYIV
Ga0209359_100606031	3300027830	Marine	PAFIVFVITLIPLFFTKLLFIADWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYI
Ga0209359_101860212	3300027830	Marine	MYYPALIVFVITLIPLFFTKFLFLAEWERPKDLNGLDARVIIFWGYVFGMVLPIGLVAFRGYIF
Ga0310343_100244584	3300031785	Seawater	LCSDICDLYDLAFYIRRFNLYYPALIVFAITLIPLLFTKYLFVADWERPKDLNGIDARMIIFWGYVFGMILPIGLVAFRGFIV
Ga0310343_115025821	3300031785	Seawater	MYYPAFIVFVITLIPLFFTKLLFIANWERPKDLNGIDARVIIFWGYVFGMVLPIGLVAFRGYII

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090493

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences