Metagenome Family F090411

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090411
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	57 residues
Representative Sequence	MKTKMGRPKLPKGTANSVLFAVKIAANEADKIQTAIRKSGLTKPDWARNALINAAQL
Number of Associated Samples	90
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.33 %
% of genes near scaffold ends (potentially truncated)	16.67 %
% of genes from short scaffolds (< 2000 bps)	74.07 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (51.852 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (44.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (37.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.94% β-sheet: 0.00% Coil/Unstructured: 67.06%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12760	Zn_Tnp_IS1595	3.70
PF12686	DUF3800	3.70
PF12762	DDE_Tnp_IS1595	2.78
PF03235	DUF262	1.85
PF07510	DUF1524	1.85
PF08501	Shikimate_dh_N	1.85
PF07494	Reg_prop	0.93
PF12833	HTH_18	0.93
PF08534	Redoxin	0.93
PF13936	HTH_38	0.93
PF00698	Acyl_transf_1	0.93
PF00450	Peptidase_S10	0.93
PF07730	HisKA_3	0.93
PF14213	DUF4325	0.93
PF03400	DDE_Tnp_IS1	0.93
PF06182	ABC2_membrane_6	0.93
PF07963	N_methyl	0.93
PF13304	AAA_21	0.93
PF01894	UPF0047	0.93
PF03372	Exo_endo_phos	0.93
PF13360	PQQ_2	0.93
PF07722	Peptidase_C26	0.93
PF05168	HEPN	0.93
PF02922	CBM_48	0.93
PF13610	DDE_Tnp_IS240	0.93
PF01954	AF2212-like	0.93
PF05016	ParE_toxin	0.93
PF13783	DUF4177	0.93
PF07971	Glyco_hydro_92	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0169	Shikimate 5-dehydrogenase	Amino acid transport and metabolism [E]	1.85
COG1479	DNAse/DNA nickase specific for phosphorothioated or glycosylated phage DNA, GmrSD/DndB/SspE family, contains DUF262 and HNH nuclease domains	Defense mechanisms [V]	1.85
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.93
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.93
COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.93
COG2250	HEPN domain protein, predicted toxin of MNT-HEPN system	Defense mechanisms [V]	0.93
COG2939	Carboxypeptidase C (cathepsin A)	Amino acid transport and metabolism [E]	0.93
COG3292	Periplasmic ligand-binding sensor domain	Signal transduction mechanisms [T]	0.93
COG3537	Putative alpha-1,2-mannosidase	Carbohydrate transport and metabolism [G]	0.93
COG3694	ABC-type uncharacterized transport system, permease component	General function prediction only [R]	0.93
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
All Organisms	root	All Organisms	48.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
cellular organisms	root	All Organisms → cellular organisms	46.30 %
Viruses	superkingdom	All Organisms → Viruses	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.30 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	19.44 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	18.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	7.41 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	5.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7.41 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	5.56 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
Pirellulales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales	0.93 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7.41 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
Pirellulaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae	0.93 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	0.93 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.93 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7.41 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	0.93 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.93 %
Anatilimnocola	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola	0.93 %
Methylobacterium pseudosasicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium pseudosasicola	0.93 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7.41 %
Pedosphaera parvula	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.93 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.93 %
Anatilimnocola floriformis	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola → Anatilimnocola floriformis	0.93 %
Methylobacterium pseudosasicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium pseudosasicola	0.93 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	51.85 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	7.41 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.85 %
Pedosphaera parvula Ellin514	strain	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	0.93 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.93 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	0.93 %
Anatilimnocola floriformis	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola → Anatilimnocola floriformis	0.93 %
Methylobacterium pseudosasicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium pseudosasicola	0.93 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10013319	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5354	Open in IMG/M
3300000567\|JGI12270J11330_10054176	Not Available	2120	Open in IMG/M
3300004091\|Ga0062387_101523391	Not Available	537	Open in IMG/M
3300005538\|Ga0070731_10002362	All Organisms → cellular organisms → Bacteria	18117	Open in IMG/M
3300006162\|Ga0075030_100011726	All Organisms → cellular organisms → Bacteria	7703	Open in IMG/M
3300006417\|Ga0069787_10215013	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	9169	Open in IMG/M
3300009518\|Ga0116128_1204067	Not Available	555	Open in IMG/M
3300009548\|Ga0116107_1025380	All Organisms → cellular organisms → Bacteria	2264	Open in IMG/M
3300009624\|Ga0116105_1108401	Not Available	702	Open in IMG/M
3300009630\|Ga0116114_1135169	Not Available	637	Open in IMG/M
3300009639\|Ga0116122_1154193	Not Available	730	Open in IMG/M
3300009839\|Ga0116223_10093633	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1906	Open in IMG/M
3300010371\|Ga0134125_11102886	Not Available	869	Open in IMG/M
3300011442\|Ga0137437_1342847	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300013297\|Ga0157378_12980857	Not Available	525	Open in IMG/M
3300013771\|Ga0119904_10042475	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1531	Open in IMG/M
3300014156\|Ga0181518_10332733	Not Available	748	Open in IMG/M
3300014159\|Ga0181530_10104802	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	1684	Open in IMG/M
3300014159\|Ga0181530_10619452	Not Available	528	Open in IMG/M
3300014165\|Ga0181523_10442496	Not Available	721	Open in IMG/M
3300014166\|Ga0134079_10053890	All Organisms → cellular organisms → Bacteria	1423	Open in IMG/M
3300014167\|Ga0181528_10351731	Not Available	800	Open in IMG/M
3300014168\|Ga0181534_10317082	Not Available	844	Open in IMG/M
3300014168\|Ga0181534_10677471	Not Available	600	Open in IMG/M
3300014169\|Ga0181531_11058691	Not Available	510	Open in IMG/M
3300014201\|Ga0181537_10158115	Not Available	1554	Open in IMG/M
3300014493\|Ga0182016_10316833	Not Available	948	Open in IMG/M
3300014495\|Ga0182015_10590420	Not Available	705	Open in IMG/M
3300014495\|Ga0182015_10613735	Not Available	689	Open in IMG/M
3300014499\|Ga0182012_10003142	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	17644	Open in IMG/M
3300014501\|Ga0182024_10083636	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula	4740	Open in IMG/M
3300014501\|Ga0182024_10249500	Not Available	2381	Open in IMG/M
3300014501\|Ga0182024_10620223	Not Available	1350	Open in IMG/M
3300014502\|Ga0182021_11553890	Not Available	797	Open in IMG/M
3300014657\|Ga0181522_10121865	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1515	Open in IMG/M
3300014657\|Ga0181522_10146333	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1380	Open in IMG/M
3300014838\|Ga0182030_10181791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2570	Open in IMG/M
3300014838\|Ga0182030_10322658	All Organisms → cellular organisms → Bacteria	1679	Open in IMG/M
3300014839\|Ga0182027_11178389	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300014839\|Ga0182027_11365013	Not Available	703	Open in IMG/M
3300017925\|Ga0187856_1005453	All Organisms → cellular organisms → Bacteria	8172	Open in IMG/M
3300017929\|Ga0187849_1103361	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300017948\|Ga0187847_10007404	All Organisms → cellular organisms → Bacteria	7631	Open in IMG/M
3300017972\|Ga0187781_10734621	Not Available	715	Open in IMG/M
3300017998\|Ga0187870_1011787	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4951	Open in IMG/M
3300018009\|Ga0187884_10090178	Not Available	1351	Open in IMG/M
3300018013\|Ga0187873_1017768	All Organisms → cellular organisms → Bacteria	3784	Open in IMG/M
3300018017\|Ga0187872_10169142	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Anatilimnocola → Anatilimnocola floriformis	1031	Open in IMG/M
3300018019\|Ga0187874_10030959	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2647	Open in IMG/M
3300018024\|Ga0187881_10315768	Not Available	646	Open in IMG/M
3300018030\|Ga0187869_10359082	Not Available	697	Open in IMG/M
3300018034\|Ga0187863_10140496	Not Available	1348	Open in IMG/M
3300018034\|Ga0187863_10699111	Not Available	572	Open in IMG/M
3300018035\|Ga0187875_10039587	All Organisms → cellular organisms → Bacteria	2786	Open in IMG/M
3300018037\|Ga0187883_10579313	Not Available	581	Open in IMG/M
3300018040\|Ga0187862_10027298	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4361	Open in IMG/M
3300018047\|Ga0187859_10106529	All Organisms → cellular organisms → Bacteria	1477	Open in IMG/M
3300019082\|Ga0187852_1173150	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300019786\|Ga0182025_1188566	Not Available	1561	Open in IMG/M
3300019788\|Ga0182028_1387595	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1649	Open in IMG/M
3300020027\|Ga0193752_1170965	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300020581\|Ga0210399_11316143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300020583\|Ga0210401_10186408	All Organisms → cellular organisms → Bacteria	1931	Open in IMG/M
3300021403\|Ga0210397_11282479	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300021405\|Ga0210387_11365521	Not Available	610	Open in IMG/M
3300021477\|Ga0210398_10199878	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1629	Open in IMG/M
3300021477\|Ga0210398_10953672	Not Available	686	Open in IMG/M
3300021559\|Ga0210409_10400069	All Organisms → Viruses → Predicted Viral	1229	Open in IMG/M
3300025444\|Ga0208189_1025492	Not Available	1229	Open in IMG/M
3300025459\|Ga0208689_1001276	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	13646	Open in IMG/M
3300025888\|Ga0209540_10251440	Not Available	1025	Open in IMG/M
3300027854\|Ga0209517_10000108	All Organisms → cellular organisms → Bacteria	136151	Open in IMG/M
3300027854\|Ga0209517_10000538	All Organisms → cellular organisms → Bacteria	64213	Open in IMG/M
3300027869\|Ga0209579_10004433	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	9828	Open in IMG/M
3300027911\|Ga0209698_10013058	All Organisms → cellular organisms → Bacteria	8216	Open in IMG/M
3300028552\|Ga0302149_1095214	Not Available	767	Open in IMG/M
3300028556\|Ga0265337_1103287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium pseudosasicola	775	Open in IMG/M
3300028577\|Ga0265318_10296119	Not Available	590	Open in IMG/M
3300028766\|Ga0302269_1007570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → Pedosphaera parvula → Pedosphaera parvula Ellin514	4058	Open in IMG/M
3300028800\|Ga0265338_10233830	Not Available	1365	Open in IMG/M
3300029911\|Ga0311361_10283688	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1886	Open in IMG/M
3300029911\|Ga0311361_10582287	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300029913\|Ga0311362_10675858	Not Available	892	Open in IMG/M
3300029914\|Ga0311359_10454134	Not Available	991	Open in IMG/M
3300029914\|Ga0311359_10474221	Not Available	961	Open in IMG/M
3300029915\|Ga0311358_10853972	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300029939\|Ga0311328_10555388	Not Available	798	Open in IMG/M
3300029955\|Ga0311342_11115811	Not Available	575	Open in IMG/M
3300029982\|Ga0302277_1184456	Not Available	828	Open in IMG/M
3300030044\|Ga0302281_10041676	All Organisms → Viruses → Predicted Viral	2408	Open in IMG/M
3300030503\|Ga0311370_11138653	Not Available	853	Open in IMG/M
3300031234\|Ga0302325_10253562	All Organisms → cellular organisms → Bacteria	2926	Open in IMG/M
3300031234\|Ga0302325_10803959	Not Available	1327	Open in IMG/M
3300031236\|Ga0302324_101475660	Not Available	885	Open in IMG/M
3300031251\|Ga0265327_10273421	Not Available	748	Open in IMG/M
3300031258\|Ga0302318_10554495	Not Available	582	Open in IMG/M
3300031446\|Ga0170820_14601165	Not Available	546	Open in IMG/M
3300031524\|Ga0302320_10987292	Not Available	896	Open in IMG/M
3300031524\|Ga0302320_11175629	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	790	Open in IMG/M
3300031788\|Ga0302319_11411291	Not Available	626	Open in IMG/M
3300031788\|Ga0302319_11860892	Not Available	517	Open in IMG/M
3300032805\|Ga0335078_10349363	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1965	Open in IMG/M
3300032805\|Ga0335078_10974482	Not Available	1008	Open in IMG/M
3300032898\|Ga0335072_10860667	Not Available	856	Open in IMG/M
3300033134\|Ga0335073_10019797	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	9384	Open in IMG/M
3300033405\|Ga0326727_10039104	All Organisms → cellular organisms → Bacteria	7973	Open in IMG/M
3300033475\|Ga0310811_10020637	All Organisms → cellular organisms → Bacteria	8696	Open in IMG/M
3300033977\|Ga0314861_0179357	Not Available	1015	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.52%
Host-Associated	Host-Associated	4.63%
Engineered	Engineered	1.85%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.41%
Aquatic	Environmental → Aquatic	36.11%
Plants	Host-Associated → Plants	4.63%
Wastewater	Engineered → Wastewater	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.04%
Freshwater	Environmental → Aquatic → Freshwater	33.33%
Peat	Environmental → Terrestrial → Peat	20.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Sediment	Environmental → Aquatic → Sediment	2.78%
Nutrient Removal	Engineered → Wastewater → Nutrient Removal	1.85%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	33.33%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	20.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	18.52%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	18.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Biological Phosphorus Removal	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	26.85%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	20.37%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	12.96%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.41%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.48%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%
Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor	0.93%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge	0.93%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	15.74%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	14.81%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	10.19%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.48%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	3.70%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.70%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	3.70%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	3.70%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.85%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.85%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Activated Sludge	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Bioreactor → Activated Sludge	0.93%
Enhanced Biological Phosphorus Removal Bioreactor	Engineered → Wastewater → Nutrient Removal → Biological Phosphorus Removal → Activated Sludge → Enhanced Biological Phosphorus Removal Bioreactor	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006417	Combined Assembly of Gp0110018, Gp0110022, Gp0110020	Engineered	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009548	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009630	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013771	Activated sludge bacterial and viral communities from EBPR bioreactors in Brisbane, Australia - M92206	Engineered	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09182015	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018035	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300019082	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_40	Environmental	Open in IMG/M
3300019786	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019788	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020027	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025444	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_40 (SPAdes)	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300025888	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-21A (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028556	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028766	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_2	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029914	III_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029915	III_Bog_E1 coassembly	Environmental	Open in IMG/M
3300029939	I_Bog_E3 coassembly	Environmental	Open in IMG/M
3300029955	II_Bog_E2 coassembly	Environmental	Open in IMG/M
3300029982	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_1	Environmental	Open in IMG/M
3300030044	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E1_2	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100133196	3300000567	Peatlands Soil	MKTKMGRPKLPKGTANTVLFAVKIAANEANKIQTAIRKSGLKKPEWARNALIEAAAR*
JGI12270J11330_100541761	3300000567	Peatlands Soil	MLTKSMKTKMGRPKLPKGTANTVLFAVRIAAQEAERIQAAIRKSGQTKPEWARQALIKAAVN*
Ga0062387_1015233911	3300004091	Bog Forest Soil	MKNKMGRPKLPKGTANNVLFAIRIAANEAQKINEAVKKSGLKKPDWARNALINAAQ*
Ga0070731_1000236219	3300005538	Surface Soil	MKKKMGRPNLPKGTAHSVLFAVRVAPNEADKIERAVKKSGLKKPQWARKALIHAAEKK*
Ga0075030_1000117266	3300006162	Watersheds	MKSKMGRPTLPKGTANTVLFAVKIAPKEAEKIHSAIKKSGLTKPAWARKALIDAAS*
Ga0069787_102150132	3300006417	Enhanced Biological Phosphorus Removal Bioreactor	MKTRMGRPKLPKGEAKGVLFAVRIAKAEADKVSQAIKRSGMKKPDWARNALLVAAGVVGNS*
Ga0116128_12040672	3300009518	Peatland	MKTKMGRPKLPKGTAKAVLFAVKVAANEADKIQRAIDKSGLNKPDWARNALLNAAGAT*
Ga0116107_10253802	3300009548	Peatland	MKKKMGRPKMPKGTAKAVLFAVKIAANEADKIQRAIRKSGLTKPDWARNALIHAAQ*
Ga0116105_11084011	3300009624	Peatland	MLTKSVKMKMGRPKLPKGTAKGVLFAVRVAANEAEKIQTAIRKSGLSKPDWARNALINAAAG*
Ga0116114_11351691	3300009630	Peatland	MKNKMGRPPMPKGTAKAVLFAVRIAGNEAGKIQQAIRKSGLTKPEWARTALLAATR*
Ga0116122_11541932	3300009639	Peatland	MKKKMGRPMLPKGIAKGVVFSVRVAANEAGKIQAAIRKSGLPKPDWARNALINAAEA*
Ga0116223_100936332	3300009839	Peatlands Soil	MKTKMGRPKLPKGTANTVLFAVRIAAQEAERIQAAIRKSGQTKPEWARQALIKAAVN*
Ga0134125_111028862	3300010371	Terrestrial Soil	MKTKMGRPKLPKGTANTVLFAVKIAATEAEKIEEAIRKSGKTKPEWARIALINAASD*
Ga0137437_13428472	3300011442	Soil	MTKKMGRPKLPKGEAKGEIFMVRVATAEADRIYKAIKRSGLSKPDWHRRALLAAAEA*
Ga0157378_129808571	3300013297	Miscanthus Rhizosphere	MKSKMGRPKLPKGTANTVLFAVRIAATEAEKIEAAIRKSGMTKPEWARTALINAAENE*
Ga0119904_100424752	3300013771	Activated Sludge	MGRPKLPKGEAKGVLFAVRIAKAEADKVSQAIKRSGMKKPDWARNALLVAAGVVGNS*
Ga0181518_103327331	3300014156	Bog	MKTKMGRPKMPKGTANTVLFAVKIAATEAEKIQTAIKKSGLTKPDWARNALINAAQT*
Ga0181530_101048023	3300014159	Bog	MKTKMGRPKLPKGTANSVLFAVRIAAQEAERIQAAIRKSGMKKPEWARKALIKAAI*
Ga0181530_106194521	3300014159	Bog	MGRPKLPQGRAHSVLFAVRIAANEANKIQRAIKRSGLPKPQWARNALIHAATD*
Ga0181523_104424962	3300014165	Bog	TKMGRPKMPKGTANTVLFAVKIAATEAEKIQTAIKKSGLTKPDWARNALINAAQT*
Ga0134079_100538902	3300014166	Grasslands Soil	MKPKRGRPRLPKSEAKGVLFAVRVAKPEAEKIQAAIKRSGLAKPDWQRRALLSAAE*
Ga0181528_103517312	3300014167	Bog	LPKGTANTVLFAVKIAANEAEKIRAAIKKSGRSKPDWARQALIHAAGQSRLEKSG*
Ga0181534_103170823	3300014168	Bog	MKPKMGRPKMPKGTANTVLFAVKIAATEAEKIQSAVRKSGLTKPVWARNALINAAS*
Ga0181534_106774711	3300014168	Bog	MKTKMGRPKLPKGTANTVLFAVKIAAVEADKIQAAIAKSGMAKPEWARHALINAARA*
Ga0181531_110586911	3300014169	Bog	MKTKMGRPKLPKGTAKGVLFAVRVAANEAERIHQAIRKSGLSKPDWARNALINAAQGG*
Ga0181537_101581152	3300014201	Bog	MKTKMGRPKMPKGTAKAVLFAVKIAATEAEKIQTAIKKSGLTKPDWARNALITAARG*
Ga0182016_103168332	3300014493	Bog	MKTKMGRPKLPKGTANSVVFSVKIAANAAEQIESAIKKSGLKKPEWARNALIHAASAS*
Ga0182015_105904201	3300014495	Palsa	MKPKMGRPKLPKGAAKGVLFAVRIAAEEANKIQQAIQRSGLPKPDWARNALLEAAIK
Ga0182015_106137352	3300014495	Palsa	MKNKMGRPKLPKGTANTVLFAVKIAAKEAEKIQAAIKKSGLTKPDWARNALIHAAQT*
Ga0182012_100031427	3300014499	Bog	MKSKMGRPKLPKGTANTVLFAVKIAAKEAAQIQTAINKSGLSKPAWARKALIDAAK*
Ga0182024_100836363	3300014501	Permafrost	MKPKMGRPKLPKGTANTVLFAVKIAANEAQRINEAVKKSGLARPEWARKALIEAAN*
Ga0182024_102495003	3300014501	Permafrost	MKTKMGRPKLPKGTANTVLFAVKIAAVEADKIQAAIKKSGMEKPEWARHALINAAGA*
Ga0182024_106202234	3300014501	Permafrost	LEKGTANAVLFAVKIAANEAQKIHAAIQKSGMMKPEWARKALINAAG*
Ga0182021_115538902	3300014502	Fen	MKTKMGRPKLPKGTANSVLFAVKIAANEADKIQTAIRKSGLTKPDWARNALINAAQL*
Ga0181522_101218652	3300014657	Bog	MLTKSMNTKMGRPKLPKGTANSVLFAVRIAANEAQKIQTAIKKSGLKKPDWARNALISEARRACA*
Ga0181522_101463332	3300014657	Bog	MKTKMGRPKMPRGTANSVLFAIRIAANEAQKINEAVKKSGLKKPEWARNALIQAASA*
Ga0182030_101817912	3300014838	Bog	MKTKMGRPKMPKGTANSVLFAVRIAANEAHKINEAVKKSGMARPEWARNALISAAQG*
Ga0182030_103226583	3300014838	Bog	MKTKMGRPKLPKGTANTVLFAVKIAAKEAAKINSAISKSGMTKPQWARKALIDAAG*
Ga0182027_111783892	3300014839	Fen	MKTKMGRPKMPKGTANSVLFAIRIAANEADKIQTAIKKSGLKKPDWARNALIHAASS*
Ga0182027_113650132	3300014839	Fen	MVTKSEKKKMGRPKLPPRTAKAVLFAVRIAAKEADRIQRAIDKSGMKKPDWARDALLNAASGA*
Ga0187856_10054537	3300017925	Peatland	MKKKMGRPMLPKGIAKGVVFSVRVAANEAGKIQAAIRKSGLPKPDWARNALINAAEA
Ga0187849_11033611	3300017929	Peatland	NKKLTKSMKKKMGRPKMPKGTAKAVLFAVKIAANEADKIQRAIRKSGLTKPDWARNALIHAAQ
Ga0187847_100074044	3300017948	Peatland	MLTKSVKMKMGRPKLPKGTAKGVLFAVRVAANEAEKIQTAIRKSGLSKPDWARNALINAAAG
Ga0187781_107346212	3300017972	Tropical Peatland	MKKKRGRPFLPKGTAHNVLFAVRVAANEADKIHQAISKSGMSKPDWARNALINAAEN
Ga0187870_10117873	3300017998	Peatland	MGRPKMPKGTAKAVLFAVKIAANEADKIQRAIRKSGLTKPDWARNALIHAAQ
Ga0187884_100901781	3300018009	Peatland	MGRPMLPKGIAKGVVFSVRVAANEAGKIQAAIRKSGLPKPDWARNALINAAEA
Ga0187873_10177682	3300018013	Peatland	MKTKMGRPKLPKGTAKAVLFAVKVAANEADKIQRAIDKSGLNKPDWARNALLNAAGAT
Ga0187872_101691422	3300018017	Peatland	MKNKMGRPPMPKGTAKAVLFAVRIAGNEAGKIQQAIRKSGLTKPEWARTALLAATR
Ga0187874_100309593	3300018019	Peatland	MGRPKMPKGTAKGVLFAVRVAANEANKIQTAIKKSGLTKPDWARNALIHAATS
Ga0187881_103157682	3300018024	Peatland	MKTKMGRPKMPKGTAKAVLFAVKIAANEADKIQRAIRKSGLTKPDWARNALIHAAQ
Ga0187869_103590821	3300018030	Peatland	MKTKMGRPKLPKGTANSVVFSVKIAANAAEKIQTAIRKSGMSKPDWARNALINAATI
Ga0187863_101404962	3300018034	Peatland	MKNKMGRPKLPKGTANTVLFAVKIAANEAEKIQAAISRSGLTKPEWARNALISAAKG
Ga0187863_106991112	3300018034	Peatland	MKKKIGRPMLPKGTANSVLFAVRIAANEADKIQTAIRKSGLKKPEWARNALIKAAI
Ga0187875_100395872	3300018035	Peatland	MGRPKMPRGTAKAVLFAVKIAANEADRIQRAIDKSGLKKPDWARNALLNAVNAR
Ga0187883_105793131	3300018037	Peatland	MGRPKLPKGTANTVLFAVKIAANEAEKIQAAISRSGLTKPEWARNALISAAKG
Ga0187862_100272986	3300018040	Peatland	MGRPKLPKGTANSVVFSVKIAANAAEKIQTAIRKSGMSKPDWARNALINAATI
Ga0187859_101065292	3300018047	Peatland	MKTKMGRPKLPKGTANSIVFSVKIAANEAAKIGDAIRKSGLKKPEWARNALVQAAEAV
Ga0187852_11731502	3300019082	Peatland	MKPKMGRPKMPKGTAKGVLFAVRVAANEANKIQTAIKKSGLTKPDWARNALIHAATS
Ga0182025_11885661	3300019786	Permafrost	MKTKMGRPKLPKGTANSVLFAVKIAANEAEKIQTAIKKSGLTKPEWARC
Ga0182028_13875954	3300019788	Fen	MGRPKLPKGTANNIVFAVKIAANEAAKIQQAIKKSGMSKPEWARNALIQAAGA
Ga0193752_11709652	3300020027	Soil	MKTRIGRPKLPKGEAKGALFAVRVSKPDAEAIQAAIKRSGTGKPEWLRNALLAAANGN
Ga0210399_113161431	3300020581	Soil	PRGTAKGVLFAVKIAANEAEKIQTAIKRSGLKKPEWARNALLSAATPLTS
Ga0210401_101864083	3300020583	Soil	MKTKMGRPKMPKGTANTVLFAVKIAANEAQKIQRAIDKSGLTKPDWARNALISAAQG
Ga0210397_112824792	3300021403	Soil	MKIKLGRPRKPKGTANTVLFAVKIAANEAVKIQQAIKHSGMTKPEWARHALIQAANR
Ga0210387_113655212	3300021405	Soil	MKTKMGRPKLPKGTANNVLFAVKIAPKEAERIDAAIKKSGMAKPEWARNALIKAAELS
Ga0210398_101998783	3300021477	Soil	MKKDNDSTLGRPAMPQGTANTVLFAFKIAANDAEQIDKAIKRSGLTKPEWARQKLLAAARRA
Ga0210398_109536722	3300021477	Soil	MLTKSMKTKMGRPKLPKGTANSVLFAVRIAAQEAEKIQAAIKKSGMEKPEWARMALISAASEA
Ga0210409_104000692	3300021559	Soil	MGRPKMPNGTANSVLFAVRIAANEAQRIQTAIRKSGLTKPEWARSALIKAAN
Ga0208189_10254922	3300025444	Peatland	MGRPPMPKGTAKAVLFAVRIAGNEAGKIQQAIRKSGLTKPEWARTALLAATR
Ga0208689_10012769	3300025459	Peatland	MKKKMGRPKMPKGTAKAVLFAVKIAANEADKIQRAIRKSGLTKPDWARNALIHAAQ
Ga0209540_102514402	3300025888	Arctic Peat Soil	MKPKMGRPKMPKGTANSILFAVRIAANEAGKIHQAIKKSGLKKPDWARNALISAARG
Ga0209517_1000010817	3300027854	Peatlands Soil	MKTKMGRPKLPKGTANTVLFAVKIAANEANKIQTAIRKSGLKKPEWARNALIEAAAR
Ga0209517_1000053843	3300027854	Peatlands Soil	MLTKSMKTKMGRPKLPKGTANTVLFAVRIAAQEAERIQAAIRKSGQTKPEWARQALIKAAVN
Ga0209579_100044332	3300027869	Surface Soil	MKKKMGRPNLPKGTAHSVLFAVRVAPNEADKIERAVKKSGLKKPQWARKALIHAAEKK
Ga0209698_100130587	3300027911	Watersheds	MKSKMGRPTLPKGTANTVLFAVKIAPKEAEKIHSAIKKSGLTKPAWARKALIDAAS
Ga0302149_10952142	3300028552	Bog	MKSKMGRPKLPKGTANTVLFAVKIAAKEAAQIQTAINKSGLSKPAWARKALIDAAK
Ga0265337_11032873	3300028556	Rhizosphere	MKTKMGRPKMPKGTANTVLFAVKIAAKEAEKIHQAIKRSGMEKPEWARNALINAARA
Ga0265318_102961192	3300028577	Rhizosphere	MKTKMGRPKLPKGTANSVLFAVKIAAVEADKIQSAIRKSGMTKPDWARNALIQAASS
Ga0302269_10075705	3300028766	Bog	MKTKMGRPKLPKGTANSVVFSVKIAANAAEQIESAIKKSGLKKPEWARNALIHAASAS
Ga0265338_102338302	3300028800	Rhizosphere	MITKMGRPKMPKGTANTVLFAVKIAANEADKIQRAIKKSGMAKPEWARNALIHAAQKG
Ga0311361_102836882	3300029911	Bog	MKTKMGRPKLPKGTANTVLFAVKIAAKEAEKIQDAIAKSGMKKPEWARHALINAAQA
Ga0311361_105822872	3300029911	Bog	MPKGTAKGVLFAVRVAEIEAEKIQAAIIKSGMSKPDWARNALVNAAGV
Ga0311362_106758582	3300029913	Bog	NTVLFAVKIAAKEAEKIQDAIAKSGMKKPEWARHALINAAQA
Ga0311359_104541341	3300029914	Bog	ILESNKKLTKSEIFMKTKMGRPKLPRGTANTVLFAVKIAAKEAEKIQDAIAKSGMKKPEWARHALINAAQA
Ga0311359_104742212	3300029914	Bog	ILESNKKLTKSEIFMKTKMGRPKLPKGTANTVLFAVKIAAVEAEKIQDAIAKSGMKKPEWARNALVNAARG
Ga0311358_108539722	3300029915	Bog	MLTKSEKSKMGRPAMPKGTAKGVLFAVRVAEIEAEKIQAAIIKSGMSKPDWARNALVNAAGV
Ga0311328_105553882	3300029939	Bog	EIFMKTKMGRPKLPKGTANTVLFAVKIAAVEAEKIQDAIAKSGMKKPEWARNALVNAARG
Ga0311342_111158112	3300029955	Bog	KLPKGTANTVLFAVKIAAKEAAHIQAAINKSGLSKPQWARKALIDAAG
Ga0302277_11844561	3300029982	Bog	GRPKLPKGTANTVLFAVKIAAVEAEKIQDAIAKSGMKKPEWARHALINAAQA
Ga0302281_100416764	3300030044	Fen	MKTKMGRPKLPKGTANTVLFAVKIAAVEAEKIQDAIAKSGMKKPEWARNALVNAARG
Ga0311370_111386532	3300030503	Palsa	MLTKNMKTKMGRPKLPKGTSNSVLFAIRIAANEADRINQAIKKSGLKKPDWARNALIQAATY
Ga0302325_102535622	3300031234	Palsa	MGRPKLPKGTSNSVLFAIRIAQNEAERIQTAIKRSGLSKPEWARSALINAATGQTP
Ga0302325_108039591	3300031234	Palsa	MPKGTSNSVLFAVRIAAREADKIHQAVKKSGMTKPEWARHALIQAAAVAGGI
Ga0302324_1014756601	3300031236	Palsa	MKTKMGRPKMPKGTSNSILFAVRIAAREADKIHQAVKKSGMTKPEWARHALIQAAAVAG
Ga0265327_102734212	3300031251	Rhizosphere	MKSKMGRPKLPKGTANSVLFAVKIASNEAEKIHTAIRKSGLKKPDWARNALIKAASI
Ga0302318_105544951	3300031258	Bog	GRPKLPKGTANTVLFAVKIAAVEAEKIQDAIAKSGMKKPEWARNALVNAARG
Ga0170820_146011652	3300031446	Forest Soil	MTPKDKAKGEVFSVRVAANEAVKIGLAIKKSGLKKPDWARNALISAAQTN
Ga0302320_109872921	3300031524	Bog	MLSCVKLNVNINMKTKMGRPKMPKGTANSVLFAVRIAANEAERIQTAIRKSGLKKPEWARQALIQAAT
Ga0302320_111756291	3300031524	Bog	MGRPAMPKGTANGVLFAVRVAEIEAEKIQAAIRKSGMSKPDWGRHALIQAAG
Ga0302319_114112911	3300031788	Bog	MKSKMGRPKLPKGTANTVLFAVKIAAKEAAHIQAAINKSGLSKPQWARKALIDAAG
Ga0302319_118608922	3300031788	Bog	GVLFAVRVAEIEAEKIQAAIRKSGMSKPDWGRHALIQAAG
Ga0335078_103493632	3300032805	Soil	MSNKKLTKSEIFMKSKMGRPKLPKGTANTVLFAVKIAAKEADKIQQAIKKSGLTKPEWARNALVNAASS
Ga0335078_109744822	3300032805	Soil	MKTKMGRPKLPKGTANSVVFSVKIAANAAEKIHTAIKKSGMTKPDWARNALINAASN
Ga0335072_108606672	3300032898	Soil	MSNKKLTKSEHFMKAKMGRPKLPKGTANTVLFAVKIAAKEAEKIHRAIKKSGLKKPDWARNALVQAAGN
Ga0335073_100197972	3300033134	Soil	MKTKMGRPKLPKGTAKGVLFAVRVAANEADKIQRAIDKSGLNRPEWARHALLNAANAH
Ga0326727_100391049	3300033405	Peat Soil	MIESNKKLTKSEIIMKTKMGRPKLPKGTANTVLFAVKIAAKEADKIQTAIRKSGLTKPDWARIALINAASS
Ga0310811_100206379	3300033475	Soil	MKAKMGRPKLPKGTANSVLFAVKIAAKEAEKIQVAIKKSGLKKPDWARNALLSAADKVI
Ga0314861_0179357_454_633	3300033977	Peatland	MKSKMGRPPLPKGKAKGVLFAVRLAPNDARRVEGAIKRSGLTKPDWARGALLTAAKEAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences