Metagenome / Metatranscriptome Family F090385

Overview

Basic Information

• Family ID: F090385
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 54 residues
• Representative Sequence: MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAFQEAMNEWVK
• Number of Associated Samples: 57
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 19.44 %
• % of genes near scaffold ends (potentially truncated): 12.96 %
• % of genes from short scaffolds (< 2000 bps): 65.74 %
• Associated GOLD sequencing projects: 57
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (41.667 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake (19.444 % of family members)
• Environment Ontology (ENVO): Unclassified (54.630 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline) (75.000 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 53.01%
  β-sheet: 0.00%
  Coil/Unstructured: 46.99%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.74.1.1: Cyclin	d4eojb1	4eoj	0.79481
a.74.1.1: Cyclin	d1w98b2	1w98	0.77603
a.74.1.1: Cyclin	d2eufa1	2euf	0.75998
a.74.1.0: automated matches	d4yoza2	4yoz	0.75576
a.74.1.2: Transcription factor IIB (TFIIB), core domain	d1c9ba1	1c9b	0.75385

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF04434	SWIM	13.89
PF06745	ATPase	6.48
PF06067	DUF932	4.63
PF13481	AAA_25	2.78
PF00149	Metallophos	1.85
PF01068	DNA_ligase_A_M	1.85
PF02562	PhoH	0.93
PF02511	Thy1	0.93
PF03544	TonB_C	0.93
PF04984	Phage_sheath_1	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG4279	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	13.89
COG4715	Uncharacterized protein, contains SWIM-type Zn finger domain	Function unknown [S]	13.89
COG5431	Predicted nucleic acid-binding protein, contains SWIM-type Zn-finger domain	General function prediction only [R]	13.89
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.85
COG0207	Thymidylate synthase	Nucleotide transport and metabolism [F]	0.93
COG0468	RecA/RadA recombinase	Replication, recombination and repair [L]	0.93
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.93
COG1351	Thymidylate synthase ThyX, FAD-dependent family	Nucleotide transport and metabolism [F]	0.93
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.33 %
Unclassified	root	N/A	41.67 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	22.22 %
Unclassified	root	N/A	41.67 %
Viruses	superkingdom	All Organisms → Viruses	36.11 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	12.04 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	30.56 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Unclassified	root	N/A	41.67 %

Level 4

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	30.56 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %

Level 5

Name	Rank	Taxonomy	Distribution
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	30.56 %

Level 6

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	30.56 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %

Level 7

Name	Rank	Taxonomy	Distribution
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	10.19 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	3.70 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	25.00 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %

Level 8

Name	Rank	Taxonomy	Distribution
Podoviridae	family	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	10.19 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 9

Name	Rank	Taxonomy	Distribution
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
unclassified Podoviridae	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 10

Name	Rank	Taxonomy	Distribution
crAss-like viruses	clade	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses	0.93 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 11

Name	Rank	Taxonomy	Distribution
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	10.19 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
unclassified Crassvirales	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales	0.93 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 12

Name	Rank	Taxonomy	Distribution
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	10.19 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 13

Name	Rank	Taxonomy	Distribution
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Spirurina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina	10.19 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 14

Name	Rank	Taxonomy	Distribution
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Spiruromorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha	10.19 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 15

Name	Rank	Taxonomy	Distribution
Filarioidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea	10.19 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 16

Name	Rank	Taxonomy	Distribution
Onchocercidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae	10.19 %
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %

Level 17

Name	Rank	Taxonomy	Distribution
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Wuchereria	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria	10.19 %

Level 18

Name	Rank	Taxonomy	Distribution
Podoviridae sp. ctrTa16	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Podoviridae → unclassified Podoviridae → crAss-like viruses → unclassified Crassvirales → Podoviridae sp. ctrTa16	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	5.56 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	41.67 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	25.00 %
Wuchereria bancrofti	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	10.19 %

Associated Scaffolds

Scaffold	Taxonomy	Length
(restricted) 3300014720|Ga0172376_10127582	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Onchocercidae → Wuchereria → Wuchereria bancrofti	1743
3300000929|NpDRAFT_10031103	Not Available	3861
3300001843|RCM34_1134211	Not Available	526
3300001847|RCM41_1003099	All Organisms → cellular organisms → Bacteria → Proteobacteria	1186
3300001847|RCM41_1011106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1500
3300002842|contig_10174	Not Available	943
3300005664|Ga0073685_1000339	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	15917
3300006484|Ga0070744_10040723	All Organisms → Viruses → Predicted Viral	1368
3300006484|Ga0070744_10177707	Not Available	608
3300006484|Ga0070744_10234262	Not Available	520

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Engineered	Engineered	0.93%
Environmental	Environmental	99.07%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	97.22%
Terrestrial	Environmental → Terrestrial	1.85%
Wastewater	Engineered → Wastewater	0.93%

Category

Habitat	Taxonomy	Distribution
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.93%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	1.85%
Freshwater	Environmental → Aquatic → Freshwater	84.26%
Marine	Environmental → Aquatic → Marine	12.96%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	4.63%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.85%
Lake	Environmental → Aquatic → Freshwater → Lake	50.00%
Lentic	Environmental → Aquatic → Freshwater → Lentic	21.30%
Lotic	Environmental → Aquatic → Freshwater → Lotic	6.48%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.93%
Pond	Environmental → Aquatic → Freshwater → Pond	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.56%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	1.85%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.93%

Subtype

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	50.00%
Unclassified	Environmental → Aquatic → Freshwater → Lentic → Unclassified	19.44%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Freshwater → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	4.63%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Pond → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.93%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.93%
Aquatic	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Aquatic	0.93%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	2.78%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	1.85%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	4.63%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.85%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.93%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	1.85%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	15.74%
Freshwater	Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater	5.56%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	4.63%
Freshwater	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater	2.78%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.93%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake	19.44%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	12.96%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.93%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.85%
Freshwater, Plankton	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton	15.74%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	2.78%
Stormwater Retention Pond	Environmental → Aquatic → Freshwater → Pond → Unclassified → Stormwater Retention Pond	0.93%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental
3300001843	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM34, ROCA_DNA218_2.0um_bLM_C_2b	Environmental
3300001847	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM41. ROCA_DNA251_0.2um_TAP-D_2a	Environmental
3300002842	Stormwater retention pond microbial communities from Williamsburg, VA - Sample from Junction Rte 99 and John Tyler Highway	Environmental
3300005664	Freshwater viral communities from Emiquon reservoir, Havana, Illinois, USA	Environmental
3300006484	Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535	Environmental
3300007538	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG	Environmental
3300007555	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555	Environmental
3300007973	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2um	Environmental
3300007974	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2um	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NpDRAFT_100311031	3300000929	Freshwater And Marine	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKTMREDETITPAQAFQSAMDEWIR*
RCM34_11342112	3300001843	Marine Plankton	MSAQTEMKVISVLLDEAMEQGLEIEVIYNALKLMREDDALTPAQAFQEAMNEWIK*
RCM41_10030992	3300001847	Marine Plankton	MSAQTDMKVISVLLDEAMEQGLEVEIIYQALKAMRDDDALTPAQAFQEAMNEWIK*
RCM41_10111064	3300001847	Marine Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKMMREDDALTPAQAFQEAMNEWIK*
contig_101742	3300002842	Stormwater Retention Pond	MSAQTDMKVISVLLDEAMEMGLEVEVIYSALKTMREDDSITPAQAFQEAINEWVK*
Ga0073685_10003399	3300005664	Aquatic	MSAQTDMAVISTLLDEVSEQGLEIEVIYTALKTMREDDAISPVAAFQYAVDEWIK*
Ga0070744_100407231	3300006484	Estuarine	MSTQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK*
Ga0070744_101777072	3300006484	Estuarine	TDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWVR*
Ga0070744_102342621	3300006484	Estuarine	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWIK*
Ga0099851_11964143	3300007538	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVR*
Ga0102817_11518372	3300007555	Estuarine	MSAQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK*
Ga0105746_10592953	3300007973	Estuary Water	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR*
Ga0105747_10333974	3300007974	Estuary Water	MSANTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114343_10811502	3300008110	Freshwater, Plankton	MSASTDMKVIEVLLDEAMEHGMEIEVIYSALKAVKEYPEITPAQAFQYGMGEWVK*
Ga0114346_10524153	3300008113	Freshwater, Plankton	MSAQTDMKVISVLLEEAMEHGLEVEVIYEALKTMREDDSITPAQAFQLAMDEWVK*
Ga0114350_10161266	3300008116	Freshwater, Plankton	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114350_10644434	3300008116	Freshwater, Plankton	MKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR*
Ga0114351_10275849	3300008117	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKMMREDDALTPSQAMQEAMNEWIK*
Ga0114355_10879331	3300008120	Freshwater, Plankton	VISVLLDEAMEQGLEIEIIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114355_12600302	3300008120	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114363_100128622	3300008266	Freshwater, Plankton	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK*
Ga0114363_100912511	3300008266	Freshwater, Plankton	MSAQTDMKVISVLLDEAMENGLEVEVIYSALKLMREDDAITPAQAFQEAINEWVK*
Ga0114364_100267129	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEQGLEVEVIYNALKLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_100484319	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEHGLEVEVIYQALRLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_10199267	3300008267	Freshwater, Plankton	KMSAQTDMKVISVLLDEAMEQGLEVEVIYAALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114364_102316111	3300008267	Freshwater, Plankton	MSAQTEMKVISVLLDEAMEQGLEIEIIYQALKLMREDDALTPSQAMQEAMNEWIK*
Ga0114364_10304273	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK*
Ga0114364_10338963	3300008267	Freshwater, Plankton	MSAQTEMKVIDVLLSEAMDHGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK*
Ga0114364_10342592	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQAFQEAMNEWVK*
Ga0114364_10408084	3300008267	Freshwater, Plankton	MSAQTDMKVISVLLDEAMEMGLEIEVIYEALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114876_10173505	3300008448	Freshwater Lake	MNTEMKVISVLLDEALEQGLEVEVIYDALKLMREDDSLSPAQAFQEAINEWVK*
Ga0114876_10238624	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEALEHGLELEVIYAALKSMQEDNSLTPAQAFQEGMNEWIR*
Ga0114876_10271227	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEVEVIYAALKTMREDDSITPAQAFQVAMDEWVK*
Ga0114876_11149202	3300008448	Freshwater Lake	MSAQTDMKVISVLLDEALEHGLELEVIYTALKAMREDDALTPAQAFQEAMNEWVK*
Ga0114876_11400352	3300008448	Freshwater Lake	MSAQTEMKVISVLLDEAMENGLEVEVIYQALRLMREDDALTPSQAFQEAMNEWVK*
Ga0114876_11473344	3300008448	Freshwater Lake	MNTEMKVISVLLDEALDQGLELEVIYGALKLMREDDSLTPAQAFQEAMNEWVK*
Ga0114880_100067139	3300008450	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEIEVIYQALKTMREDDAITPAQAMQVAMDEWVK*
Ga0114880_100691817	3300008450	Freshwater Lake	IDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK*
Ga0114880_100941614	3300008450	Freshwater Lake	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAF
Ga0114880_11850931	3300008450	Freshwater Lake	IDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK*
Ga0102829_11221062	3300009026	Estuarine	MSAQTDMKVISILLDEAMGEGLEVEVIYSALKTMREDDSITPAQAMQVAMDEWVK*
Ga0116191_12436932	3300009716	Anaerobic Digestor Sludge	MAQNTDMKVIGVLLDEAMDNGLEVEVIYYALKAMQEDPTLSPAQAFQAGMDEWVK*
Ga0153698_103185	3300011335	Freshwater	MSAQTEMKVISVLLDEAMEQGLEVEVIYNALKLMREDDALTPSQAFQEAMNEWVK*
Ga0153698_132813	3300011335	Freshwater	MAKLNTMSTQQELKVIGVLLEEAMEYGLEAEVVYSALKAMQEDNTLHPSQAVQYAMEDWIK*
Ga0157210_10331283	3300012665	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPAQAVQHAMDEWVK*
Ga0138275_13086351	3300012776	Freshwater Lake	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWVK*
Ga0170791_129243091	3300013295	Freshwater	MSAQTEMKVISVLLDEAMNEGLEVEVIYSALKVMREEETMTPSQAFQEAMNEWVK*
Ga0177922_108592671	3300013372	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQAFQYAMDEWVK*
Ga0119952_10115525	3300014050	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYEALKTMREDDAITPSQAFQLAMDEWVK*
(restricted) Ga0172376_101275824	3300014720	Freshwater	MKVIGVLLDEAMEHGLELEVIYSALKAMHEDETISPAQAFQIGMDEWIR*
Ga0119954_10457211	3300014819	Freshwater	MSTQTDMKVISILLDEAMAEGLEVEVIYSALKTMRDDDAITPAQAFQEAMNEWVK*
Ga0181356_10970491	3300017761	Freshwater Lake	NKMSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAMQYAMDEWIK
Ga0181356_11167423	3300017761	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQYAMDEWVK
Ga0181343_10957862	3300017766	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEVEVIYNALKLMREDDAITPAQAFQEAMNEWVK
Ga0181358_12481513	3300017774	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAV
Ga0181357_10323165	3300017777	Freshwater Lake	AQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK
Ga0181359_100021110	3300019784	Freshwater Lake	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQAFQYAMDEWVK
Ga0181359_10004364	3300019784	Freshwater Lake	MASAQTEMKVISVLLDEAMDNGLEVEVIYAALKAMREDDAITPAQAFQVGMDEWVK
Ga0181359_10325653	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0181359_10476052	3300019784	Freshwater Lake	MSAQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK
Ga0181359_11010774	3300019784	Freshwater Lake	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0181359_11065224	3300019784	Freshwater Lake	TDMKVISVLLDEAMEHGLEIEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0181359_11206312	3300019784	Freshwater Lake	MSANTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0181359_11384651	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEMGLEVEVIYTALKTMREDDSITPSQAFQVAMDEWIK
Ga0181359_11553643	3300019784	Freshwater Lake	MSAQTDMKVISVLLDEAMEQGLEIEVIYSALKTMREDDAITPAQAFQEAMNEWIK
Ga0181359_11949602	3300019784	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0194113_108123542	3300020074	Freshwater Lake	MSINTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQTGMDEWIR
Ga0211726_105167671	3300020161	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKLMREDDAITPAQAFQYAMDEWVK
Ga0194115_100447934	3300020183	Freshwater Lake	MSINTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVK
Ga0194128_101248634	3300020197	Freshwater Lake	MSTNIDMKVISVLLDEAMKHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR
Ga0194133_100802778	3300021091	Freshwater Lake	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQTGMDEWIR
Ga0222714_101779643	3300021961	Estuarine Water	MSAQTEMKVIDVLLSEAMDHGLELEVIHSALKAMREDETLTPAQAFQVAMDEWVK
Ga0212029_10523691	3300022063	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEW
Ga0181353_10679272	3300022179	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMHEDETISPAQAFQIGMDEWIR
Ga0181351_10418855	3300022407	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKTMREDETITPAQAFQSAMDEWIR
Ga0181351_10913942	3300022407	Freshwater Lake	MSANTDMKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQVGMDEWIR
Ga0181351_11417574	3300022407	Freshwater Lake	MSAQTEMKVISVLLDEAMEHGLELEVIHSSLKLMREDETLTPAQAFQLAMDEWIR
Ga0181351_11722723	3300022407	Freshwater Lake	MSAQTDMKVISVLLDEAMEHGLEVEVIYAALKAIKEDETISPAQAFQIGCNEWIK
Ga0214917_100691445	3300022752	Freshwater	MSAQTEMKVISVLLDEAMEHGLEVEVIYQALKLMREDDALTPSQTMQEAMNEWVK
Ga0214917_101068642	3300022752	Freshwater	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETITPAQAFQMGMDEWIR
Ga0214917_102399712	3300022752	Freshwater	MSAQTDMKVISVLLDEAMENGLEVEVIYSALKTMREDDAITPAQAMQVAMDEWVK
Ga0214921_10000180123	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYEALKTMREDDAITPAQAMQVAMDEWVK
Ga0214921_1000472338	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWVK
Ga0214921_100150039	3300023174	Freshwater	MSAQTDMKVISILLDEAMAEGLEVEVIYSALKTMRDDDAITPAQAFQEAMNEWVK
Ga0214921_100704916	3300023174	Freshwater	MSAQTDMKVISVLLEEAMNEGLEVEVIYSALKTMREDDAITPSQAMQIAMDEWVK
Ga0214921_101470022	3300023174	Freshwater	MSAQTDMKVISVLLEEAMNEGLEVEVIYSALKIMREDDSITPSQAMQEAMNEWVK
Ga0214921_102521272	3300023174	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPSQAFQEAMNEWVK
Ga0214923_100000357	3300023179	Freshwater	MSAQTEMKVIDVLLSEAMDNGLELEVIYSALKAMREDETLTPAQAFQVAMDEWVK
Ga0214923_103395592	3300023179	Freshwater	MSAQTDMKVISVLLDEAMAEGLEVEVIYSALKTMREDDAITPSQAMQVAMDEWIK
Ga0214919_10000053212	3300023184	Freshwater	MSAQTEMKVISVLLDEAMNEGLEVEVIYSALKVMREEETMTPSQAFQEAMNEWVK
Ga0214919_101016665	3300023184	Freshwater	MIKIKHMSAQTEMKVISILLDEAMECGLEVEVIYSALKLMREDDAITPSQAMQEAMNEWV
Ga0244775_102921562	3300024346	Estuarine	MSTQTEMKVISVLLDEAMEQGLELEIIYSALKAMREDDAITPSQAMQHAMNDWIK
Ga0244775_112509332	3300024346	Estuarine	MSAQTDMKVISILLDEAMGEGLEVEVIYSALKTMREDDSITPAQAMQVAMDEWVK
Ga0208161_10465074	3300025646	Aqueous	MSVSTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWVR
Ga0209354_102939001	3300027808	Freshwater Lake	MASAQVEMKVISVLLDEAMDSGLEVEVIYSALKVMREDDAITPAQA
Ga0209668_100181207	3300027899	Freshwater Lake Sediment	MSAQTDMKVISVLLDEAMEQGLEIEVIYSALKTMREDDAIGPLQAMQIAMDEWIK
Ga0209668_111294752	3300027899	Freshwater Lake Sediment	MSAQTEMKVIDVLLSEAMDHGLELEVIYSALKAMREDETLTPAQAFQIAMDEWVK
Ga0247723_10281523	3300028025	Deep Subsurface Sediment	MASAQTEMKVINVLLDEAMDSGLEVEVIYSALKMMREDDAITPAQAFQYAMDEWVK
Ga0247723_10954663	3300028025	Deep Subsurface Sediment	MSAQTDMKVISVLLDEAMEHGLEVEVIYSALKTMREDDAITPAQAVQHAMDEWVK
Ga0315900_104971783	3300031787	Freshwater	MKVIGVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0315900_105786012	3300031787	Freshwater	MSAQTDMKVISVLLDEALEHGLELEVIYTALKLMREDDALTPAQAFQESMNEWVK
Ga0315900_107287303	3300031787	Freshwater	MSAQTDMKVISVLLDEALEHGLELEVIYTALKAMREDDALTPAQAFQEAMNEWVK
Ga0315901_110484622	3300031963	Freshwater	MNTEMKVISVLLDEALDQGLELEVIYGALKLMREDDSLTPAQAFQEAMNEWVK
Ga0315901_110534661	3300031963	Freshwater	MSASTDMKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQALQIGMDEWIR
Ga0315902_105236032	3300032093	Freshwater	MNTEMKVISVLLDEALEQGLEVEVIYDALKLMREDDSLSPAQAFQEAINEWVK
Ga0335030_0027009_3453_3602	3300034103	Freshwater	MKVISVLLDEAMEHGLELEVIYSALKAMREDETISPAQAFQIGMDEWIR
Ga0335036_0472761_86_253	3300034106	Freshwater	MSAQTDMKVISVLLDEAMEHGLEVEVIYAALKAIKEDETISPAQAFQFGMDEWVK
Ga0335036_0883811_266_436	3300034106	Freshwater	MASAQVEMKVISVLLDEAMDSGLEVEAIYSALKVMREDDAITPAQAFQYAMDEWVK