NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F090349

Metagenome / Metatranscriptome Family F090349

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F090349
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 139 residues
Representative Sequence TAYPLRVRQSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLERMAPERRP
Number of Associated Samples 88
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 78
AlphaFold2 3D model prediction Yes
3D model pTM-score0.81

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(11.111 % of family members)
Environment Ontology (ENVO) Unclassified
(57.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(58.333 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152.154.156.158.160.162.164.166.168.170.172.174.176.178.180.182.184.186.188.190.192.194.196.198.200.202.204.206.208.210.212.214.216.218
1INPhiseqgaiiFebDRAFT_1055427771
2INPhiseqgaiiFebDRAFT_1055463631
3C688J18823_110325151
4C688J35102_1178688751
5C688J35102_1179680381
6C688J35102_1189568201
7Ga0062593_1028008341
8Ga0070676_115290281
9Ga0070666_106719451
10Ga0068868_1003601231
11Ga0068868_1014744981
12Ga0068868_1015862481
13Ga0070689_1007443722
14Ga0070668_1021270691
15Ga0070675_1012945862
16Ga0070667_1008568291
17Ga0070667_1018008372
18Ga0070681_113734482
19Ga0073909_100479541
20Ga0070686_1013737142
21Ga0070686_1017276612
22Ga0070664_1009784172
23Ga0066654_105893351
24Ga0068859_1006853072
25Ga0068864_1006678982
26Ga0068866_113713521
27Ga0068861_1011551982
28Ga0068851_101295441
29Ga0068858_1009003912
30Ga0068858_1018172441
31Ga0066788_101974071
32Ga0075024_1006248892
33Ga0074060_117859913
34Ga0105240_123559851
35Ga0105247_102886522
36Ga0105243_121728641
37Ga0105248_1002028310
38Ga0105248_115030002
39Ga0105248_116543182
40Ga0105237_109160802
41Ga0105238_108880702
42Ga0105249_121944911
43Ga0105859_10297452
44Ga0105858_10161232
45Ga0105858_12042371
46Ga0126379_114920622
47Ga0105239_107649601
48Ga0134124_120466302
49Ga0134124_127950181
50Ga0134121_102887742
51Ga0105246_107310611
52Ga0150985_1012769241
53Ga0150985_1040935182
54Ga0150985_1111124261
55Ga0137413_108982842
56Ga0137404_110830842
57Ga0164301_116057882
58Ga0126369_132164101
59Ga0157378_107047452
60Ga0163162_114415981
61Ga0163162_134171671
62Ga0163163_130736361
63Ga0157376_100069996
64Ga0193692_10505312
65Ga0193753_104032581
66Ga0193699_104757112
67Ga0210402_112101732
68Ga0213852_14499592
69Ga0207656_104094371
70Ga0207710_103578672
71Ga0207680_101327203
72Ga0207680_108425322
73Ga0207680_113289142
74Ga0207685_103901961
75Ga0207707_111312741
76Ga0207686_105260362
77Ga0207686_109569261
78Ga0207709_108434922
79Ga0207704_111431641
80Ga0207691_114506801
81Ga0207679_115587411
82Ga0207658_104788931
83Ga0207658_105271342
84Ga0207703_102498692
85Ga0207641_107973551
86Ga0207676_121226701
87Ga0209903_10147621
88Ga0209848_10221811
89Ga0179587_105008911
90Ga0268264_107450152
91Ga0268264_109021871
92Ga0307280_102130632
93Ga0307314_100582722
94Ga0307495_102007511
95Ga0318534_101421682
96Ga0318573_101194271
97Ga0318560_101457651
98Ga0310813_121733472
99Ga0307469_110770152
100Ga0318509_101379622
101Ga0318521_105858041
102Ga0318547_106167512
103Ga0318552_106664402
104Ga0318497_108779281
105Ga0310909_115560421
106Ga0318510_101400511
107Ga0306924_103306573
108Ga0372943_0573989_125_739
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.06%    β-sheet: 0.00%    Coil/Unstructured: 36.94%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

102030405060708090100110120TAYPLRVRQSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLERMAPERRPSequenceα-helicesβ-strandsCoilSS Conf. score
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.81
Powered by PDBe Molstar

Structural matches with SCOPe domains



 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy


Visualization
Unclassified
100.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Watersheds
Watersheds
Soil
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Soil
Soil
Soil
Soil
Hardwood Forest Soil
Permafrost Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Avena Fatua Rhizosphere
Corn Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
7.4%2.8%2.8%2.8%11.1%3.7%3.7%2.8%2.8%9.3%4.6%5.6%4.6%3.7%8.3%2.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10554277713300000364SoilLDVNPINASTLPPPTMLGVARIDSYWQTNQAAQLRNAMARLHGPGVAPLPMRVRQTPEWRNQAERLLNDIDQWSGKSEREERDYFYQKAVLYNWLIDLEPAGALHAQTLRSFVEFLRRSETDSSRRMLWFAFLNRLLEMAHGPFRNDVLTAMEYSHQPAIVLYGKLERMAPERRP*
INPhiseqgaiiFebDRAFT_10554636313300000364SoilVNPINPDAARLPSTLGAARIDMYWQTGDAARLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWSGKSERDERDYFYEKSVLFTWLLDLMPASPVRSQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERMAPERRP*
C688J18823_1103251513300001686SoilLYWQTTDARRLQDAFMRLRGPGATAVPLRIRRTAEWRNQAERLLTDVDQWNGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDVSQRMLWFAFVNRLLEMTHSPFRSDVLAAMEESHQPTLWVYARLERMAPERRADR*
C688J35102_11786887513300002568SoilLTADAGRLHDAAVRLRGPGAAPFPLRVRQGPEWRLQADRMLTDVEQWSGKSEREERDYVYEKGVLYTWLLDLIPRGALHVRATRSFVEFLRRSETDVNRRMLWFAFVNRLLELAHGSYRGEVLSAMEESHQPTLVIYARLERMSAERRP*
C688J35102_11796803813300002568SoilALPLASTLAPATVDLYWQTTDARRLQDAFMRLRGPGATAVPLRIRRTAEWRNQAERLLTDVDQWNGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDVSQRMLWFAFVNRLLEMTHSPFRSDVLAAMEESHQPTLWVYARLERMAPERRADR*
C688J35102_11895682013300002568SoilAAFNAALRRARAEFDVRPLDPTAARPLSTLGTARIDLYWQTADARRLQDAFVRLRGPGATAVPMRIRRTAEWRNQAERLLTDIDQWSGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDVSQRMLWFAFVNRLLEMTHSPYRNEVLAAMEESHQPTLWVYARIERQMPERRGDR*
Ga0062593_10280083413300004114SoilDYFYQKSVLFTWLLDLMPASSVRTQALQSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERLAPERRP*
Ga0070676_1152902813300005328Miscanthus RhizosphereANTLPPPTMLGVARIDSYWQTSQAAQLRSAMARLHGPGVAPLPMRVRQTPEWRNQAERLLNDIDQWSGKSEREERDYFYQKAVLYNWLLDLEPAGALRVQTLRAFVEYLRRSETDANRRMLWFAFVNRLLGMTRGPYRNEVLTAMEYSHQPAIILYAKLERMTPERRP*
Ga0070666_1067194513300005335Switchgrass RhizosphereARPLSTVAGARFDMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0068868_10036012313300005338Miscanthus RhizosphereVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0068868_10147449813300005338Miscanthus RhizosphereLRRAKADVNVNPINPDAARLPSTLGTARIDMYWQTGEASRLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWSGKSERDERDYFYQKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLSAMEYSHQPVIALYARLERMAPERRP*
Ga0068868_10158624813300005338Miscanthus RhizosphereTASATPSVFNTALRRARALDVKPIDADAARYAASTLGTARIDLYWQTVDAGRLHDAAARLRGPGATAYPLRVRQSDEWRAQAERLLTDVDAWSGRSEREERDYFYQKAVLYTWMLDLIPGGQLHARALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP*
Ga0070689_10074437223300005340Switchgrass RhizosphereAALRRAKAEDDVNPINANALPTATLLAGARIDPYWQTSDASRLHDAAARLRGPGAAPFPMRVRQTAEWRHQAERLLNDVDQWSGKSERDERDYFYQKSVLYSWLLDLEPPGSLRTQTLRSFVDYLRRSENDASRRALWFAFVNRLLEMTRGPSRNEVLTAMEYSHQPAIILYAKLERMVPERRP*
Ga0070668_10212706913300005347Switchgrass RhizosphereGEASRLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWTGRSERDERDYFYQKSVLFTWLLDLMPASSVRTEALRAFVEFLRRSENDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPAIALYARLERMAPERRP*
Ga0070675_10129458623300005354Miscanthus RhizosphereAWLLDLVPASAVRTQALRSFIEFLRRSETDVNGRMLWFAFVNRLLEMARGPYRTEVLAAMEYSHQPVIALYARLERMAPERRP*
Ga0070667_10085682913300005367Switchgrass RhizosphereEERDYFYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP*
Ga0070667_10180083723300005367Switchgrass RhizosphereTAYPLRVRQSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLERMAPERRP*
Ga0070681_1137344823300005458Corn RhizosphereAVALRGPGAAPYSLRVRQTPEWRQQADRLLTDVEQWSGKTEREESDYVYEKAVLYTWLLELIPRGSLHVRTTRSFVEFLRRTETDVNRRTLWFAFVNRLLEMAHGSYRGEVLSAMEDSHQPTLAVYARLERMAPERKP*
Ga0073909_1004795413300005526Surface SoilMDADAARYAVSSLGVAHIDSYWQSSNAGQLHDAAARLRGPGAAPFPLRVRQTAEWRAQAERLLNDVDQWSGRSEREERDYFYQKAVLYTWMLDLIPGGPLHTRTLRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPYRSSVLAAMEESHQPVLSLYARLERLAPERRP*
Ga0070686_10137371423300005544Switchgrass RhizosphereSERDERDYFYQKSVLYSWLLDLEPAGSLRTQTLRSFVDYLRRSENDASRRALWFAFVNRLLEMTRGPSRNEVLTAMEYSHQPAIILYAKLERMAPERRP*
Ga0070686_10172766123300005544Switchgrass RhizosphereERDYLYQKAVLYTWMLDLIPAGELHTRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLEKMAPERRP*
Ga0070664_10097841723300005564Corn RhizosphereEQWSGKSERDERDYFYEKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERLAPERRP*
Ga0066654_1058933513300005587SoilALRTYLLAQFKAPRCADNVTADVMPATFNAALRRARAEFDVRPIDAAAARPLSTLGTARIDLYWQTADARRLQDAFMRLRGPGATAVPMRIRRTAEWRNQAERLLTDIDQWSGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDASQRMLWFAFVNRLLEMTHSPYRNEVLAAMEESHQPTLWVYARIE
Ga0068859_10068530723300005617Switchgrass RhizosphereDAVAARPLSTVAGARFDMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0068864_10066789823300005618Switchgrass RhizosphereEADAARYAASTLGSARIDPYWQTGDAARLHDAAVKLRGPGAVAVPLRVRQTAEWRAQADRLLGEIDQWSGRSEREERDYVYQKGVLYIWLLDLIPAGALHGRATRSFVEFLRRSETDVNRRMLWFAFVNRLLEMTRGRFRLEVLSAMEESHQPVLVMYARLERLAPERRP*
Ga0068866_1137135213300005718Miscanthus RhizosphereTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0068861_10115519823300005719Switchgrass RhizospherePRCADNVTAPTAPTTFNAALRRAKADVDVNPINPDAARLPSTLGTARIDMYWQTGEASRLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWTGRSERDERDYFYQKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPAIALYARLERMAPERRP*
Ga0068851_1012954413300005834Corn RhizosphereLHEAAVRLRGPGATAYPLRVRRSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVGRRMLWFAFVNRLLEMTRGPFRGEVLAAMEESHQPVLSLYARLERMAPERRP*
Ga0068858_10090039123300005842Switchgrass RhizosphereAERLLTDVDAWSGRSEREERDYFYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP*
Ga0068858_10181724413300005842Switchgrass RhizosphereGARIDPYWQTSDASRLHDAAARLRGPGAAPFPMRVRQTAEWRHQAERLLNDVDQWSGKSERDERDYFYQKSVLYSWLLDLEPPGSLRTQTLRSFVDYLRRSENDASRRALWFAFVNRLLEMTRGPSRNEVLTAMEYSHQPAIILYARLERMAPERRP*
Ga0066788_1019740713300005944SoilERDYFYQKSVLYTWLLELMPQSVVRQRALRSFVEFLRRSETDVNQRALWFAFVNRLLEMASGPYRAEVLAAMEESHQPTLWVYARLERQAPERRP*
Ga0075024_10062488923300006047WatershedsPGSAVLPLRVRQTPEWRNQADRLLTDVEHWSGASEPAERDYFYEKSALFTWMLDLMPPSEVRTRALRAFVEFLRRTETDVSRRTLWFAFVNRLLELARGPSRGEVLSAMEESHQPVLSLYARIERMMPERKP*
Ga0074060_1178599133300006604SoilKGVLYTWMLDLIPGGPLHTRTLRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPYRSSVLAAMEESHQPVMSLYARLERLAPERRP*
Ga0105240_1235598513300009093Corn RhizosphereAMARLRGPGAAAYPLRVRQSQEWRTQADQLLTEVERWGGASEGAERDYFYEKAVLFTWLLDLIPRGELHTRAVRGLVEFLRRTETDINRRMLWFAFVNRLLEMTHGPFRAEVLAAMEESHQPVIALYAKLERLTPDRRP*
Ga0105247_1028865223300009101Switchgrass RhizosphereMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0105243_1217286413300009148Miscanthus RhizosphereATAYPLRVRQSAEWRVQADRLLSDVEQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP*
Ga0105248_10020283103300009177Switchgrass RhizosphereTAPTTFNAALRRAKADVDVNPINPDAARLPSTLGAARIDMYWQTGDAARLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWSGKSERDEGDYFYEKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERLAPERRP*
Ga0105248_1150300023300009177Switchgrass RhizosphereGVARIDPYWQTGDAGRLHDAAVKLRGPGATPYPLRVRQSAEWRVQADRLLSDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP*
Ga0105248_1165431823300009177Switchgrass RhizosphereVAARPLSTVAGARFDMLWGSPDAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0105237_1091608023300009545Corn RhizosphereARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0105238_1088807023300009551Corn RhizosphereEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYAQLEKMAPERRP*
Ga0105249_1219449113300009553Switchgrass RhizosphereTLAATAPTNFNAALRRAKADVDVNPINPDAARLPSTLGAARIDMYWQTGEASRLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWTGRSERDERDYFYQKSVLFTWLLDLMPASSVRTEALRAFGEFLRRSENDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPAIALYARLERMAPERRP*
Ga0105859_102974523300009651Permafrost SoilVKPIDENAARLPTLLGATHIDMYWQTAEAGRLHDAAARLRGTGAVAPPLRVRHTVEWRNQAEALLIDVERWSAARESNERDYFYQKSVLYTWLLELMPQSVVRQRALRSFVEFLRRSETDVNQRALWFAFVNRLLEMASGPYRAEVLAAMEESHQPTLWVYARLERQAPERRP*
Ga0105858_101612323300009661Permafrost SoilVALPLRVRQTVEWRNQAEALLIDVERWSAARESNERDYFYQKSVLYTWLLELMPQSVVRQRALRSFVEFLRRSETDVNQRALWFAFVNRLLEMASGPYRAEVLAAMEESHQPTLWVYARLERQAPERRP*
Ga0105858_120423713300009661Permafrost SoilVDLYWQSADAARLHDAAVRLRGPGTVPVPMTVRLTDNWRNQAERLLGDVEQWSGIREPAERDYFYQKGVLYIWLLDLMPASPVRSRALRSFVDFLRHTETDVNRRMLWFAFVNRLLEMSRGPYRSQVLAAMEDSHQPVLALYARLERLTPSRRE*
Ga0126379_1149206223300010366Tropical Forest SoilVPVPMRTRQTAEWRSQAERLLTDVEQWSGLSERAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHNEADVSRRMLWFAFVNRLLELAHGASRGEILSAMEQSHQPVLSLYARLERIAPERRP*
Ga0105239_1076496013300010375Corn RhizosphereTVAGARFDMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQAYRLLTEVEQWIGTSETTERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0134124_1204663023300010397Terrestrial SoilAAYPLRVRLSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP*
Ga0134124_1279501813300010397Terrestrial SoilRAKADVDVNPINPDAARLPSTLGAARIDMYWQTGDAARLHDAAVRLRGPGAVAVPLRVRRTQEWRNEAGRLLNDVEQWSGKSERDEGDYFYEKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERLAPE
Ga0134121_1028877423300010401Terrestrial SoilWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP*
Ga0105246_1073106113300011119Miscanthus RhizosphereTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGVLHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0150985_10127692413300012212Avena Fatua RhizosphereRARAEFDVRPLDPTAARPLSTLGTAKIDLYWQTADARRLQDAFMRLRGPGATAVPMRIRRTAEWRNQAERLLTDIDQWSGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDVSQRMLWFAFVNRLLEMTHSPSRNEVLAAMEESHQPTLWVYARIERQMPE
Ga0150985_10409351823300012212Avena Fatua RhizosphereLHDAAVRLRGPGAAPFPLRVRQGPEWRLQADRMLTDVEQWSGKSEREERDYVYEKGVLYTWLLDLIPRGALHVRATRSFVEFLRRSETDVNRRMLWFAFVNRLLELAHGSYRGEVLSAMEESHQPTLVIYARLERMSPERRP*
Ga0150985_11111242613300012212Avena Fatua RhizosphereDLYWQTTDARRLQDAFMRLRGPGATAVPLRIRRTAEWRNQAERLLTDVDQWNGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDVSQRMLWFAFVNRLLEMTHSPFRSDVLAAMEESHQPTLWVYARLERMAPERRADR*
Ga0137413_1089828423300012924Vadose Zone SoilGIARIDTYWQTIDASRLHEAAARLRGPGATAYPLRVRQSEEWRTQADRLLTDVDSWNGRSEREERDYFYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSSVLAAMEESHQPVLALYARLERLTPERRP*
Ga0137404_1108308423300012929Vadose Zone SoilQADRLLTDVDAWSGRSEREERDYFYQKAVLYTWMLDLIPGGPLHTRAVRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRSQFRSSVLAAMEESHQPVLALYARLERLTPERRP*
Ga0164301_1160578823300012960SoilQADRLLSDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRASVLSAMEESHQSTLILYARLERLTPDRRP*
Ga0126369_1321641013300012971Tropical Forest SoilAARLHDGLTRLRGRDAVPVPMRTRQTVEWRSQAERLLTDVEQWTGLSEPAERDYFYEKSALFTWMLELMPPGALHTRALHAFVEFLRHTEADVNRRMLWFAFVNRLLELAHGSSRGEILSAMEQSHQPVLSLYARLERIAPERRPY*
Ga0157378_1070474523300013297Miscanthus RhizosphereDEWRAQAERLLTDVDAWSGRSEREERDYFYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP*
Ga0163162_1144159813300013306Switchgrass RhizosphereQWTGRSERDERDYFYQKSVLFTWLLDLMPASSVRTEALRAFVEFLRRSENDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPAIALYARLERMAPERRP*
Ga0163162_1341716713300013306Switchgrass RhizosphereAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP*
Ga0163163_1307363613300014325Switchgrass RhizosphereKADVNVNPINPDAARLPSTLGTARIDMYWQTGEASRLHDAAVRLRGPGAMAVPLRVRRTQEWRNEAGRLLNDVEQWTGRSERDERDYFYQKSVLFAWLLDLVPASAVRTQALRSFIEFLRRSETDVNGRMLWFAFVNRLLEMARGPYRTEVLAAMEYSHQPVIALYARLERMA
Ga0157376_1000699963300014969Miscanthus RhizosphereVARIDPYWQTADAGWLHDAAVKLRGPGATAYPLRVRQSAEWRVQADRLLSDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP*
Ga0193692_105053123300020000SoilLYWQTGDAGRLHDAAVRLRGPGATAYPLRVRQSAEWRAQADRLLTDVDQWSGKSERDERDYVYQKAVLYTWMLDLIPAGELHTRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRSEVLAAMEESHQPVLSLYARLERMAPERRP
Ga0193753_1040325813300020034SoilDVDHWSGKSERDERDYLYQKAVLYTWTLDLIPAGPLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMTRGPFRAEVLTAMEDSHQAVLSLYARLERMAPERRP
Ga0193699_1047571123300021363SoilEERDYFYQKAVLYTWMLDLIPAGQLHTRALRSFVEFLRRTETDVNRRTLWFAFVNRLLEMSRGPFRSSVLAAMEESHQPVLALYARLERLAPERRP
Ga0210402_1121017323300021478SoilRIDTYWQTMDASRLHDAAARLRGPGAVAYPLRMRQSDEWRAQAERLLTDIDQWSGKSEREERDYFYQKAVLYTWMLDLIPAGQLHTRAIRSFVEFLRRAETDVNGRMLWFAFVNRLLEMSRGPFRSGILAAMEESHQPVLGLYARLERLMPERRP
Ga0213852_144995923300021858WatershedsRIDAYWQTIDASRLHDAAARLRGSGATAYPLRVRQSDEWRAQAERMLTDVDQWSGRSEREEGDYFYQKAVLYTWMLDLIPAGQLHTRAIRLLVEFLRRTETDVNRRTLWFAFVNRLLEMSRGPFRSSVLAAMEESHQPALALYARLERLAPERRP
Ga0207656_1040943713300025321Corn RhizosphereAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHVRAVRAFVEFLRRTETDVGRRMLWFAFVNRLLEMTRGPFRGEVLAAMEESHQPVLSLYARLERMAPERRP
Ga0207710_1035786723300025900Switchgrass RhizosphereSTVAGARFDMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP
Ga0207680_1013272033300025903Switchgrass RhizosphereTLVSITPSTFNAALRRVRAGYDVKPIDADAARAVASSLGVARIDPYWQTADAGRLHDAAVKLRGPGATAYPLRVRQSAEWRVQADRLLSDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP
Ga0207680_1084253223300025903Switchgrass RhizosphereRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP
Ga0207680_1132891423300025903Switchgrass RhizosphereYLYQKAVLYTWMLDLIPAGELHTRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLEKMAPERRP
Ga0207685_1039019613300025905Corn, Switchgrass And Miscanthus RhizosphereLLNDVDQWSGRSEREERDYFYQKSVLYSWLIDLEPAGALRAQTLRSFVEYLRRSENDASRRALWFAFVNRLLELTRGPSRNEVLTAMEYSHQPAIVLYAKLERMAPERRP
Ga0207707_1113127413300025912Corn RhizosphereDVAVALRGPGAAPYSLRVRQTPEWRQQADRLLTDVEQWSGKTEREESDYVYEKAVLYTWLLELIPRGSLHVRTTRSFVEFLRRTETDVNRRTLWFAFVNRLLEMAHGSYRGEVLSAMEDSHQPTLAVYARLERMAPERKP
Ga0207686_1052603623300025934Miscanthus RhizosphereLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP
Ga0207686_1095692613300025934Miscanthus RhizosphereLLSDVDQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP
Ga0207709_1084349223300025935Miscanthus RhizosphereAEWRVQADRLLSDVEQWSGKSERDERDYLYQKAVLYTWMIDLIPGGQLHTRAVRAFVEFLRRTETDVNRRMLWFAFVNRLLEMARGPFRGEVLTAMEESHQAVLSLYARLERMAPERRP
Ga0207704_1114316413300025938Miscanthus RhizospherePLRVRLSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPAGELHTRAVRAFVEFLRRTETDVSRRMLWFAFVNRLLEMTRGPFRTEVLAAMEESHQPVLSLYARLEKMAPERRP
Ga0207691_1145068013300025940Miscanthus RhizosphereAEWRAQADRLLGEIDQWSGRSEREERDYVYQKGVLYIWLLDLIPAGALHGRATRSFVEFLRRTETDVNRRMLWFAFVNRLLEMTRGPFRSEVLSAMEESHQPVLVMYARLERLAPERRP
Ga0207679_1155874113300025945Corn RhizospherePSTLGAARIDMYWQTADAARLHDAAVRLRGPGARAVPLRVRRTQEWRNEASRLLNDVEQWSGKSERDERDYFYQKAVLFTWMLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERMAPERRP
Ga0207658_1047889313300025986Switchgrass RhizosphereDEGTHRARVQRTGRNPFYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP
Ga0207658_1052713423300025986Switchgrass RhizosphereSLGVARIDLYWQTGDAGRLHDAAVRLRGPGATAYPLRVRQSAEWRAQADRLLTDVDQWSGKSERDERDYLYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP
Ga0207703_1024986923300026035Switchgrass RhizosphereAGARFDMLWGSPEAARLHDAAAALRGPGTSVVPLRTRQTAEWRAQADRLLTDVEQWSGTSEATERDYFYEKSVLFTWLVEWIPPGALHTRAVRSFVEFLRRMETDVSRRALWFAFVNRLLEFAHGPFRAEVLSAMEESHQPVLSLYARLERLAPERKP
Ga0207641_1079735513300026088Switchgrass RhizosphereDYFYQKSVLFAWLLDLVPASAVRTQALRSFIEFLRRSETDVNGRMLWFAFVNRLLEMARGPYRTEVLAAMEYSHQPVIALYARLERMAPERRP
Ga0207676_1212267013300026095Switchgrass RhizosphereQTAEWRAQADRLLGEIDQWSGRSERDERDYVYQKGVLYIWLLDLIPAGALHGRATRSFVEFLRRSETDVNRRMLWFAFVNRLLEMTRGRFRLEVLSAMEESHQPVLVMYARLERLAPERR
Ga0209903_101476213300026216SoilGTAHIDMYWQTAEAGRLHDAAARLRGTGAVALPLRVRQTVEWRNQAEALLIDVERWSAARESNERDYFYQKSVLYTWLLELMPQSVVRQRALRSFVEFLRRSETDVNQRALWFAFVNRLLEMASGPYRAEVLAAMEESHQPTLWVYARLERQAPERRP
Ga0209848_102218113300026221Permafrost SoilRNQAEALLIDVERWSAARESNERDYFYQKSVLYTWLLELMPQSVVRQRALRSFVEFLRRSETDVNQRALWFAFVNRLLEMASGPYRAEVLAAMEESHQPTLWVYARLERQAPERRP
Ga0179587_1050089113300026557Vadose Zone SoilDRLITDIDQWSGKSEREERDYFYQKAVLYTWMLDLIPAGQLHTRAIRSLVELLRRTETDVNGRMLWFAFVNRLLEMSRGPFRSSELAAMEESHQPVLGLYARLERLAPERRP
Ga0268264_1074501523300028381Switchgrass RhizosphereFYEKSGLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPMIALYARLERMAPERRP
Ga0268264_1090218713300028381Switchgrass RhizosphereTPSVFNTALRRARALDVKPIDADAARYAASTLGTARIDLYWQTVDAGRLHDAAARLRGPGATAYPLRVRQSDEWRAQAERLLTDVDAWSGRSEREERDYFYQKAVLYTWMLDLIPGGQLHTRALRSFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRSNVLAAMEESHQPVVALYGRLERLTPERRP
Ga0307280_1021306323300028768SoilEQWSGKSERDERDYFYEKSVLFTWLLDLMPASSVGTEALRSFVEFLRRSENDVNRRMLWFAFVNRLLEMARGPYRAEVLTAMEYSHQPVIALYARLERMAPERRP
Ga0307314_1005827223300028872SoilAAPALDEWRAQADRLLTDVERWSGASERIEGDYFYQKAALFTWMLELMPASQVRTRALRAFVEFLRRTETDVNRRMLWFAFVNRLLEMSRGPFRASILSAMEESHQSTLILYAHLERLIPDRRP
Ga0307495_1020075113300031199SoilDAAPLPLRVRQTTEWRSQAERLLTEVEQWNGMSEAAERDYFYEKSALFTWMLDLMPQSAVRSRALRAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGSSRAEILSAMEQSRQPVLSLYARLERIAPERRP
Ga0318534_1014216823300031544SoilPVPMRTRQTVEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318573_1011942713300031564SoilRQTAEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318560_1014576513300031682SoilTRLRGPDAVPVPMRTRQTAEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0310813_1217334723300031716SoilERDERDYFYEKSVLFTWLLDLMPASSVRTQALRSFVEFLRRSETDVNRRMLWFAFVNCLLEMARGPYRAEVLTAMEYSHQPVIALYARLERLAPERRP
Ga0307469_1107701523300031720Hardwood Forest SoilRIDLYWQSGDAARLHDAMVRLRGPDTAPLPLRVRQTTEWRSQAERLLTEVEQWNGMSEAAERDYFYEKSALFTWMLDLMPQSAVRSRALRAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGSSRTEILSAMEQSRQPVLSLYARLERIAPERRP
Ga0318509_1013796223300031768SoilQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318521_1058580413300031770SoilERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318547_1061675123300031781SoilGDAARLHDGLTRLRGPDAVPVPMRTRQTAEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318552_1066644023300031782SoilLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318497_1087792813300031805SoilLTRLRGPDAVPVPMRTRQTVEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0310909_1155604213300031947SoilAAHIDMFWQSGDAARLHDGLTRLRGPDAVPVPMRTRQTVEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0318510_1014005113300032064SoilSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGSLHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0306924_1033065733300032076SoilDAARLHDGLTRLRGPDAVPVPMRTRQTVEWRSQAERLLTDVEQWSGLSEAAERDYFYEKSALFTWMLELIPPGALHTRALHAFVEFLRHTEADVSRRTLWFAFVNRLLELAHGASRAEILSAMEQSHQPVLSLYARLERVAPERRP
Ga0372943_0573989_125_7393300034268SoilLRAPRCADNVTAALMPGGFNAALRRARAEFDVRPIDAATLPAPSMLGTAKIDLYWQTADARRLQEAFMRLRGPGATAVPLRIRRTAEWRNQAERLLTDVDQWSGKSEAAVRDYFYQKSLLYTWLLDLMPASSVRSHVLRSFVEFMRRSETDAGQRMLWFAFVNRLLEMTHSPFRSEVLTAMEESHQATLWVYARLERMVPERRQ


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.