Metagenome / Metatranscriptome Family F090283

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090283
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	76 residues
Representative Sequence	VAIGDNGNTVPAEVSGRRTSFRAADPTRNAFFWLSAFFVVYCARPEDWIPGLKYFPLAKITAILAIWGLFTSM
Number of Associated Samples	93
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.19 %
% of genes near scaffold ends (potentially truncated)	97.22 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.222 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland (12.963 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.296 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.68% β-sheet: 0.00% Coil/Unstructured: 68.32%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13692	Glyco_trans_1_4	58.33
PF02397	Bac_transf	8.33
PF00535	Glycos_transf_2	4.63
PF13401	AAA_22	1.85
PF13524	Glyco_trans_1_2	1.85
PF13632	Glyco_trans_2_3	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	8.33

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	53.70 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	30.56 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	30.56 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	13.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.70 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.89 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.70 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	30.56 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.89 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.70 %
Unclassified	root	N/A	2.78 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10197031	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	797	Open in IMG/M
3300001545\|JGI12630J15595_10065257	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	718	Open in IMG/M
3300001593\|JGI12635J15846_10003230	All Organisms → cellular organisms → Bacteria → Acidobacteria	14222	Open in IMG/M
3300004152\|Ga0062386_100807164	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	773	Open in IMG/M
3300004635\|Ga0062388_101000941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	812	Open in IMG/M
3300005178\|Ga0066688_11031317	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005445\|Ga0070708_100350267	All Organisms → cellular organisms → Bacteria → Acidobacteria	1392	Open in IMG/M
3300005536\|Ga0070697_101029518	All Organisms → cellular organisms → Bacteria → Acidobacteria	732	Open in IMG/M
3300006059\|Ga0075017_100314948	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300006059\|Ga0075017_101333400	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	563	Open in IMG/M
3300006642\|Ga0075521_10242302	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	861	Open in IMG/M
3300006795\|Ga0075520_1327367	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	626	Open in IMG/M
3300009089\|Ga0099828_10428291	All Organisms → cellular organisms → Bacteria → Acidobacteria	1193	Open in IMG/M
3300009525\|Ga0116220_10480088	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	562	Open in IMG/M
3300009764\|Ga0116134_1293457	All Organisms → cellular organisms → Bacteria → Acidobacteria	559	Open in IMG/M
3300009839\|Ga0116223_10688009	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	588	Open in IMG/M
3300010379\|Ga0136449_101042940	All Organisms → cellular organisms → Bacteria → Acidobacteria	1310	Open in IMG/M
3300010379\|Ga0136449_102760538	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	695	Open in IMG/M
3300010379\|Ga0136449_103850740	All Organisms → cellular organisms → Bacteria → Acidobacteria	564	Open in IMG/M
3300010880\|Ga0126350_10214281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300011270\|Ga0137391_11221068	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	599	Open in IMG/M
3300012205\|Ga0137362_11628074	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300012361\|Ga0137360_10470179	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300014167\|Ga0181528_10049355	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2335	Open in IMG/M
3300014169\|Ga0181531_10212710	All Organisms → cellular organisms → Bacteria → Acidobacteria	1176	Open in IMG/M
3300014201\|Ga0181537_11196715	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300014496\|Ga0182011_10186618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1416	Open in IMG/M
3300014654\|Ga0181525_10765225	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300016750\|Ga0181505_11197594	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300017823\|Ga0187818_10275291	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	738	Open in IMG/M
3300017929\|Ga0187849_1045384	All Organisms → cellular organisms → Bacteria	2099	Open in IMG/M
3300017931\|Ga0187877_1203019	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	777	Open in IMG/M
3300017932\|Ga0187814_10412861	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300017933\|Ga0187801_10038533	All Organisms → cellular organisms → Bacteria → Acidobacteria	1705	Open in IMG/M
3300017934\|Ga0187803_10159617	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	887	Open in IMG/M
3300017940\|Ga0187853_10034117	All Organisms → cellular organisms → Bacteria → Acidobacteria	2700	Open in IMG/M
3300017940\|Ga0187853_10171541	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300017955\|Ga0187817_10144521	All Organisms → cellular organisms → Bacteria → Acidobacteria	1511	Open in IMG/M
3300018009\|Ga0187884_10085615	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300018012\|Ga0187810_10295684	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	669	Open in IMG/M
3300018013\|Ga0187873_1122326	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1012	Open in IMG/M
3300018015\|Ga0187866_1272920	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300018018\|Ga0187886_1119636	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300018026\|Ga0187857_10231347	All Organisms → cellular organisms → Bacteria → Acidobacteria	855	Open in IMG/M
3300018026\|Ga0187857_10430986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300018044\|Ga0187890_10440174	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	732	Open in IMG/M
3300018046\|Ga0187851_10587025	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300018047\|Ga0187859_10636344	All Organisms → cellular organisms → Bacteria → Acidobacteria	603	Open in IMG/M
3300018085\|Ga0187772_10327738	All Organisms → cellular organisms → Bacteria → Acidobacteria	1054	Open in IMG/M
3300018085\|Ga0187772_10357119	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1011	Open in IMG/M
3300018085\|Ga0187772_10533166	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	830	Open in IMG/M
3300018085\|Ga0187772_11461788	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300019787\|Ga0182031_1084285	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300019787\|Ga0182031_1125246	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1033	Open in IMG/M
3300019787\|Ga0182031_1196598	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300019787\|Ga0182031_1270560	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1961	Open in IMG/M
3300019888\|Ga0193751_1131645	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	919	Open in IMG/M
3300021168\|Ga0210406_10089592	All Organisms → cellular organisms → Bacteria	2623	Open in IMG/M
3300021405\|Ga0210387_11716802	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	531	Open in IMG/M
3300021858\|Ga0213852_1254238	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	565	Open in IMG/M
3300021861\|Ga0213853_11481918	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	623	Open in IMG/M
3300022521\|Ga0224541_1004795	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300022521\|Ga0224541_1009761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1034	Open in IMG/M
3300025441\|Ga0208456_1024408	All Organisms → cellular organisms → Bacteria	1276	Open in IMG/M
3300025506\|Ga0208937_1118171	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300025619\|Ga0207926_1021164	All Organisms → cellular organisms → Bacteria	2046	Open in IMG/M
3300025619\|Ga0207926_1041757	All Organisms → cellular organisms → Bacteria → Acidobacteria	1314	Open in IMG/M
3300025878\|Ga0209584_10162069	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	845	Open in IMG/M
3300025922\|Ga0207646_10839132	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	817	Open in IMG/M
3300026304\|Ga0209240_1297687	All Organisms → cellular organisms → Bacteria → Acidobacteria	500	Open in IMG/M
3300026333\|Ga0209158_1318692	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	537	Open in IMG/M
3300026358\|Ga0257166_1032969	All Organisms → cellular organisms → Bacteria → Acidobacteria	712	Open in IMG/M
3300026515\|Ga0257158_1113270	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300027583\|Ga0209527_1096572	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	663	Open in IMG/M
3300027605\|Ga0209329_1005222	All Organisms → cellular organisms → Bacteria	2278	Open in IMG/M
3300027616\|Ga0209106_1028194	All Organisms → cellular organisms → Bacteria → Acidobacteria	1235	Open in IMG/M
3300027738\|Ga0208989_10223969	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	618	Open in IMG/M
3300027783\|Ga0209448_10288477	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300027824\|Ga0209040_10097191	All Organisms → cellular organisms → Bacteria → Acidobacteria	1673	Open in IMG/M
3300027824\|Ga0209040_10367476	All Organisms → cellular organisms → Bacteria → Acidobacteria	678	Open in IMG/M
3300027902\|Ga0209048_10640187	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	705	Open in IMG/M
3300027905\|Ga0209415_10054844	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5032	Open in IMG/M
3300027905\|Ga0209415_10431132	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1048	Open in IMG/M
3300028795\|Ga0302227_10404006	All Organisms → cellular organisms → Bacteria → Acidobacteria	518	Open in IMG/M
3300028798\|Ga0302222_10116595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1059	Open in IMG/M
3300029889\|Ga0246001_1082952	All Organisms → cellular organisms → Bacteria → Acidobacteria	593	Open in IMG/M
3300030058\|Ga0302179_10007867	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5683	Open in IMG/M
3300030230\|Ga0302207_1124684	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	669	Open in IMG/M
3300030399\|Ga0311353_10588209	All Organisms → cellular organisms → Bacteria → Acidobacteria	974	Open in IMG/M
3300030520\|Ga0311372_10467236	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300030524\|Ga0311357_11199877	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	656	Open in IMG/M
3300031249\|Ga0265339_10066345	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300031525\|Ga0302326_11495607	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	905	Open in IMG/M
3300031708\|Ga0310686_116587614	All Organisms → cellular organisms → Bacteria → Acidobacteria	2044	Open in IMG/M
3300031754\|Ga0307475_10841643	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	726	Open in IMG/M
3300032160\|Ga0311301_12743608	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300032180\|Ga0307471_100161099	All Organisms → cellular organisms → Bacteria → Acidobacteria	2178	Open in IMG/M
3300032828\|Ga0335080_10867918	All Organisms → cellular organisms → Bacteria → Acidobacteria	928	Open in IMG/M
3300032955\|Ga0335076_11087087	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	682	Open in IMG/M
3300033433\|Ga0326726_10500442	All Organisms → cellular organisms → Bacteria	1162	Open in IMG/M
3300033797\|Ga0334815_040664	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	579	Open in IMG/M
3300033821\|Ga0334818_058688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300033983\|Ga0371488_0300469	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300034125\|Ga0370484_0062894	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	935	Open in IMG/M
3300034163\|Ga0370515_0019147	All Organisms → cellular organisms → Bacteria	3164	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.81%
Aquatic	Environmental → Aquatic	34.26%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.93%
Freshwater	Environmental → Aquatic → Freshwater	32.41%
Peat	Environmental → Terrestrial → Peat	13.89%
Sediment	Environmental → Aquatic → Sediment	1.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	28.70%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.89%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.89%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.85%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	21.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.81%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.89%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.63%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	12.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.63%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.70%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	3.70%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.70%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.85%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.93%
Peat	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.93%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006642	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017934	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_3	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018015	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150	Environmental	Open in IMG/M
3300018018	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021858	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2015 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022521	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24	Environmental	Open in IMG/M
3300025441	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_100 (SPAdes)	Environmental	Open in IMG/M
3300025506	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_40 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027738	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028795	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_1	Environmental	Open in IMG/M
3300028798	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2	Environmental	Open in IMG/M
3300029889	Peat microbial communities from Marcell Experimental Forest bog in Minnesota, USA - MG_T3F_30cm	Environmental	Open in IMG/M
3300030058	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1	Environmental	Open in IMG/M
3300030230	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_2	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031249	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033797	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-S	Environmental	Open in IMG/M
3300033821	Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-X0	Environmental	Open in IMG/M
3300033983	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fraction	Environmental	Open in IMG/M
3300034125	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_101970311	3300001356	Peatlands Soil	VAISDNGNGNAVAAEATGRRTSFKAADPTRKAFFWLSAFFVVYCARPEDWI
JGI12630J15595_100652571	3300001545	Forest Soil	VAIGDNGNSVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKFFPLAK
JGI12635J15846_100032301	3300001593	Forest Soil	VAIGDNGNIAAAETTRGRTPFKAADPTKGAFFWLSGFFMVYCARPEDWIPGLKYFPLAKITAILAMWGLFTAL
Ga0062386_1008071642	3300004152	Bog Forest Soil	VAISDSGNGNLGSVEVPGTRTSFRAADPTRTAFFWLSAFFVVYCARPEDWIPGLKYLPLAKLTA
Ga0062388_1010009412	3300004635	Bog Forest Soil	VAIGDNITVAGEVPGRRRLAQVADPTKFAFFWLSAFFVVYCARPEDWVPGLKYIPCAKVTAILAMWGLFTAMGKTKRTFKDV
Ga0066688_110313172	3300005178	Soil	LNYRRPLVARGVLGRVANGENMAIAREIPNRRRSLEIADPTKFGFFWLSAFFVVYCARPEDWIPGLRMIPLAKITAILTILGWFTTVGRTKRT
Ga0070708_1003502672	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VAIGDNGNIVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWI
Ga0070697_1010295181	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VAIGDHGTNTNLATAEVTGRRLSVRMGDPTRNAFFWLSAFFVVYCARPEDW
Ga0075017_1003149482	3300006059	Watersheds	VAIGDNGNKIAVQKPERRIAFRAADPTRNAFFWLSGFFVVYCARPEDYIPGLKYLPLAK
Ga0075017_1013334002	3300006059	Watersheds	VAIGDNGNKIAQKPERRISFRAADPTRNAFFWLSGFFVVYCARPEDYIPGLKYLPLAK
Ga0075521_102423022	3300006642	Arctic Peat Soil	VAIGDNGNTATASAPTTRGLSRMSDPTKSAFFWLSGFFIVYCARPEDWIVGLKFLPLAKITAIMSMW
Ga0075520_13273672	3300006795	Arctic Peat Soil	VAIGDNGNTAPAGVSGRRISFRASDPTKSAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAILAMWGLFTALGRTKRTLKDLPKE
Ga0099828_104282912	3300009089	Vadose Zone Soil	VAIGDNGNSVPAEVSGRRTSFLAADPTRSAFFWLSAFFVVYCARPEDWIPGLKYFPLAKITAILAMWGLFTSLGRTKR
Ga0116220_104800881	3300009525	Peatlands Soil	VAIGDNDNNGNLATAEVTGKRMSVKWVDPTKNAFFWLCAFFVVYCARPEDYIPGLKYLP
Ga0116134_12934572	3300009764	Peatland	VAISDNITATGELPGKRTFIKLADPTKFAFFWLSAFFFVYCARPEDWFPGLKYIPCAKVTAILAMWGWFTSLGKTKRTFKDVPREGKLLL
Ga0116223_106880092	3300009839	Peatlands Soil	VAIGDNDNNGNLATAEVTGKRMSVKWVDPTKNAFFWLCAFFVVYCARPEDYIPGLKYLPLAKITAVMAAWGLFSAMGKT
Ga0136449_1010429402	3300010379	Peatlands Soil	VAIGDNGNVVTADALGRRSAFRVADPTKSAFFWLSAFFVVYCARPEDWVPGLKYFPLAKITAILAMWALFSSSGRTKRTYKDLPKEAKLL
Ga0136449_1027605382	3300010379	Peatlands Soil	VAIGDNGNKIAAQKPERRISFRAADPTRNAFFWLSGFFVVYCARPEDYIPGLKFLPLAKI
Ga0136449_1038507402	3300010379	Peatlands Soil	VAISDNVNGNGNIVPAEVSGSRTSFRAADPTKNAFFWLSGFFVVYCARPEDWVPGLKFFPLAKITAILAMWGLFTALGRTKRTMKDLPKEAKL
Ga0126350_102142812	3300010880	Boreal Forest Soil	VSIGDNGNIAAADGAGRRTSFKAADPTKTAFFWLSAFFVVYCARPEDWIPGLKYFPLAKITAILAMWGLFTALGKTKRTFKDLPKE
Ga0137391_112210682	3300011270	Vadose Zone Soil	VAIGDNGNTVPAEISGRRTSFRAADPTKNAFFWLCGFFVVYCARPEDWVPGLKFFPLAKI
Ga0137362_116280741	3300012205	Vadose Zone Soil	MKSYENVAVTAKETPSGRRTFKIADPTKFAFLRLSAFFVVYCARPEDWIPGLKFIPLAKITGILALW
Ga0137360_104701792	3300012361	Vadose Zone Soil	VAIGDHGTNTNLATAEVTGRRLSVRMGDPTRNAFFWLSAFFVVYCARPEDWVPGLRFF
Ga0181528_100493551	3300014167	Bog	VANGNNMTGAAEDTFGRRVRVKLADPTKSAFFWLSAFFVVYCARPEDWIPGLKLIPLAKITALMAMWGLFNNLGRIKRGFKDVPQEGK
Ga0181531_102127101	3300014169	Bog	VATGDNGNPTPAQLLPGRRSGTQESDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILAMWGLFKSVGRTKRTLKDLPTEARLLITMIGLLLL
Ga0181537_111967152	3300014201	Bog	VAIGDNGNPTAAEALPGSRASIYVADPTKGAFFWLSAFFLVYCARPGDWMPGLAYIPLAKITAILAMWGLFR
Ga0182011_101866183	3300014496	Fen	VAIGDNGNIVPAEVLGRRASFRVADPTKGAFFWLCAFFVVYCARPEDYLHLEYIPLAKIT
Ga0181525_107652252	3300014654	Bog	VATGDNGNPTPAQLLPGRRSGTQESDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILAMWGLFKSVGRTKRTLKDLPTEARLLITMI
Ga0181505_111975942	3300016750	Peatland	VAIGDNGNGVATEVPGRRTSFRASDPTKTAFFWLSGFFVVYCARPEDYIPGLNYLPLAKITAILAMWGLFTALGKTKRTLKDLPKEARLL
Ga0187818_102752912	3300017823	Freshwater Sediment	VAISANGNGNVVPAEVRGSRASFRAADPTKNAFFWLSGFFVVYCARPEDWVPGLKFFPLAKITAILAMWGLFTALGRTKRTMKDLPKEAK
Ga0187849_10453844	3300017929	Peatland	VAIGDNGNLVPAEVSGRRTSFRAADPTKGAFFWLSAFFVVYCARPEDFVPGLGYVPLSKITAILAMWGLFTSLGRTKR
Ga0187877_12030191	3300017931	Peatland	VAIGDTGNGDDNRVAAEVRGRRMSFRAADPTKTAFFWLSGFFVVYCARPEDWIPGLKF
Ga0187814_104128612	3300017932	Freshwater Sediment	VAISDSVNGNLVAAEVPGTRTSFRAADPTRAAFFWLSGFFVVYCARPEDWIP
Ga0187801_100385332	3300017933	Freshwater Sediment	VVIGDNGNLIPAEVSGRRTSFRLADPTKMAFFWLSAFFVVYCALPEDVIPGLRYFPLAKITAILAMWGLFNAMGRTKRTLKDLPKEA
Ga0187803_101596172	3300017934	Freshwater Sediment	VVIGDNGNLVPAEVSGRRTSFRVADPTKAPFFWLSAFFVVYCARPEDWIPGPLKYLPMAKITAILAMWGLFNAMGKTKRTLKDLP
Ga0187853_100341171	3300017940	Peatland	VAIGDNGNLVPAEVSGRRTSFRAADPTKGAFFWLGAFFVVYCARPEDFVPGLGYVPLSKITAILAMWGLFTTMGRTKRTVKDL
Ga0187853_101715412	3300017940	Peatland	VAISDNGSGNVVPAEVSRRRTSFRAADPTKNAFFWLSGFFVVYCARPEDWVPGLKYFPLAKITAILAMWGLFTALG
Ga0187817_101445212	3300017955	Freshwater Sediment	VVIGDNGNLIPAEVSGRRTSFRLADPTKMAFFWLSAFFVVYCARPEDWIPGLRYFPLAKITAILAMWGLFNAMGRTKRTLKDLPKEAKILLT
Ga0187884_100856151	3300018009	Peatland	MVAIGDNTTEVMENPFRQKVAPVGDLTKPAFFWLSAFFLVYCARPEDWVPGLNYVPCAKITGILCMWAL
Ga0187810_102956842	3300018012	Freshwater Sediment	VGIGENENAVTADALGGRSAFRVADPTKSAFFWLCGFFVVYCARPEDWI
Ga0187873_11223262	3300018013	Peatland	VAIGDTGNGDDNRVAAEVRGRRMSFRAADPTKTAFFWLSGFFVVYCARPEDWIP
Ga0187866_12729201	3300018015	Peatland	VAIGDTGNGDDNRVAAEVRGRRMSFRAADPTKTAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAILAMWGLFTTLGRTKRTLKDLPKEA
Ga0187886_11196361	3300018018	Peatland	MCDSGALSGRQGLKEKEEFVAIGDNGNIVPAEVSGRRTSFRAADPTKGAFFWLSAFFVVYCARPEDWVPGMQYFPLAKVTAI
Ga0187857_102313473	3300018026	Peatland	VAIGDRDSIVPAEVSGRRIRFRVSDPTKGAFFWLCAFFVMYCTRPQDFIPGAQYIPVGKITAIMAMWGLFNAVGRTKRKYKDLPKEA
Ga0187857_104309862	3300018026	Peatland	VAISDNANGNIAPAEVSGRRTSFRAADPTKNAFFWLSAFFVVYCARPEDWVP
Ga0187890_104401741	3300018044	Peatland	LATGDNGNRTPAQMLSGSRASFQASDPTKGAFFWLSAFFLVYCARPGDWTPGLSYIPLAKITAILALWGLFRSIGRTKRTLKDIPKEGRLLITMILLL
Ga0187851_105870251	3300018046	Peatland	LATGDNGNRTPAQMLSGSRASFQASDPTKGAFFWLSAFFLVYCARPGDWTPGLSYIPLAKITAILALWGLFRSIGRTKRTLKDIPKEGRL
Ga0187859_106363441	3300018047	Peatland	VAISDNANGNIAPAEVSGRRTSFRAADPTKNAFFWLSAFFVVYCARPEDWVPGLKYFPLAKITAILAMW
Ga0187772_103277382	3300018085	Tropical Peatland	VANGNSGNVTTIEELPGRRTFVQMADPTKGAFFWLSAFFVVYCARPEDWIPGLKVLPLAKITAILALWGLFNSLGRTRRTFKDLPKEARLLLTMIIL
Ga0187772_103571192	3300018085	Tropical Peatland	VVIRENGNATTIEAPPERRGSFLRGDPTKAAFFWLSAFFFVYCARPEDWVIVLAYLPLAKITAVFAMWGLFSSIGTTKRTMKDIPKEGRLLLTMIILLFIGGF
Ga0187772_105331661	3300018085	Tropical Peatland	VIGNNGNVTTIDALPGRRTSVQIADPTKGAFFWLSAFFVVYCARPEDWIPGLKLLPLAKITAILALWGLFNSL
Ga0187772_114617882	3300018085	Tropical Peatland	VAIGDNNNRTPVVALPGTRAAFQEADPTKGAFFWLSAFFLVYCARPGDWMPGLAYVPLAKITAILAMWGLFRSIGRTKRTLKDLPKE
Ga0182031_10842852	3300019787	Bog	VAIGDHGNTVPAEISGRRTSFRAADPTSQAFFWLCGFFVVYCTRFEDFIPGLSYIPLGKITALMAMYGLFTAIGK
Ga0182031_11252462	3300019787	Bog	VAIGDHGNTVPAEISGRRTSFRAADPTSQAFFWLCGFFVVYCTRFEDFIPGLSYIPLGKITALMAMYGLFTAI
Ga0182031_11965981	3300019787	Bog	VATGNNGNVEAVALPGRRVSYQAGDPTKSAFFWLSAFFVVYCARPEDWIPGLKMFPLAKITAILAMWGLFNSLGRTRNVN
Ga0182031_12705603	3300019787	Bog	VATGNNGNVEAVALPGRRVSYQAGDPTKSAFFWLSAFFVVYCARPEDWIPGLKMFPLAKITAILAMWGLFNSLGRTK
Ga0193751_11316452	3300019888	Soil	VAIGDNRTITAEETPRRRASFKLADPTKGAFFWLSAFFVVYCARPEDWVPGLKYFPLAKITAILAMWGLFTALGRTKR
Ga0210406_100895923	3300021168	Soil	VAIGDNGNSVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKYLPLAKITAILAMWGLFTAL
Ga0210387_117168022	3300021405	Soil	VAIGDNGNTIPAEVSGRRASFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKF
Ga0210398_101434463	3300021477	Soil	VASGDNTTAIAEIPGRRRLAQVADPTKFAFFWLSAFFVVYCARPEDWFPGLKYIPCAKVTAILAMWGLFTAMGKTKRT
Ga0213852_12542382	3300021858	Watersheds	VAIGDHGKNGNLAAAVTGRRMSVKMGDPTRNAFFWLSAFFVVYCARPEDWVPGLRFFPLAKITAILAMW
Ga0213853_114819181	3300021861	Watersheds	VAIGDNGNKIAVQKPERRIAFRAADPTRNAFFWLSGFFVVYCARPEDYIPGLKYLPLAKITAIMAM
Ga0224541_10047951	3300022521	Soil	VATGDNGNLAPAQLLPGRRTGTQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILA
Ga0224541_10097611	3300022521	Soil	VAIGDNGNNGNLTPSDVPRWRASYKAADPTRKAFFWLCAFFVVYCARPEDWIPGLEFLPLAKITAILAMWGLFTSL
Ga0208456_10244083	3300025441	Peatland	VAIGDDGNIVPAEVSGRRTSFRAADPTKGAFFWLSAFFVVYCARPEDWIPGMQYFPL
Ga0208937_11181712	3300025506	Peatland	VAIGDTGNGDDNRVAAEVRGRRMSFRAADPTKTAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAILAMWGLFTALGRTKR
Ga0207926_10211641	3300025619	Arctic Peat Soil	VAIGDNGNTVPAEVSGRRTSFRAADPTRNAFFWLSAFFVVYCARPEDWIPGLKYFPLAKITAILAIWGLFTSM
Ga0207926_10417571	3300025619	Arctic Peat Soil	VVIGDNGNLVPAEVSGGRTSFRLADPTKMAFFWLSAFFVVYCARPEDWVPGLKYFPLAKITAILAMWGLFNALGRTKRTLKDLPREAKILL
Ga0209584_101620691	3300025878	Arctic Peat Soil	VAIGDNGNTATASAPTTRGLSRMSDPTKSAFFWLSGFFIVYCARPEDWIVGLKFLPLAKITAIMSMWGLF
Ga0207646_108391321	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VAIGDNGNSVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKFLPLAKITAILA
Ga0209240_12976872	3300026304	Grasslands Soil	VAIGDNGYTIAAEGSGRRISFRASDPTRMAFFWLSAFFVVYCARPEDWIPGLKLLPLAKITAILAMWGLFTSVGRTKRTFKDLP
Ga0209158_13186921	3300026333	Soil	VAIGDNGNAVPAGVSGRRTSFRASDPTRMAFFWLSAFFVVYCARPEDWIPGLKFLPL
Ga0257166_10329692	3300026358	Soil	VAIGDHGTNTNLATAEVTGRRLSVRMGDPTRNAFFWLSAFFVVYCARPEDWVPGLRFFPLAKITAILAMW
Ga0257158_11132701	3300026515	Soil	VAIGDRGNNNGNPATAEFSGARAPIKAADPTRAAFFWLSAFFVVYCARPEDWIPGLKYFPLAKMTAIPAMYGLYTTMGKTKRTLKDLPKEAKLLM
Ga0209527_10965721	3300027583	Forest Soil	VAIGDNGNTIPAEVSGRRASFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLNFFPLAKITAILAMW
Ga0209329_10052221	3300027605	Forest Soil	VAIGDNGNSVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKYLPLAKITAILAMWGLFTSL
Ga0209106_10281942	3300027616	Forest Soil	VAIGDNGNSVPAEVSGRRTSFRASDPTRMAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAILAMWGLFTALGRTK
Ga0208989_102239691	3300027738	Forest Soil	VAIGDNGNTLQAEVSGRRISFRAADPTRMAFFWLSAFFVIYCARPEDWIPGLKLLPLAKITAIL
Ga0209448_102884771	3300027783	Bog Forest Soil	VAIGDNGNVVATEGPGRRTSFQMSDPTKKAFFWLSGFFVVYCARPEDYIPGLNYLPLAKITAILAMWGLFTALGK
Ga0209040_100971911	3300027824	Bog Forest Soil	VAIGDNGNHGNLATAEVTGKRMSVKMADPTKNAFFWLIGFFVVYCARPEEYVPGLKYFPLAKITAILALWALFTAIGKTKRTFKDVPREGKLLLALILFMFMGAVLSP
Ga0209040_103674761	3300027824	Bog Forest Soil	VGSSTITPAEILGRRRTVQLADPTKFAFFWLSAFFIVYCARPEDYIPGLNLIPCAKITAILAMWGLFRAWGKTKRTFKDVPK
Ga0209048_106401872	3300027902	Freshwater Lake Sediment	LREKEGFVAIRDSGNDNLVPAEATGRRPSFQASDPTKNAFFWLSAFFVVYCARPEDWIPGLKYLPLAKLTAIPAIWG
Ga0209415_100548445	3300027905	Peatlands Soil	VAISDNGNGNAVAAEATGRRTSFKAADPTRKAFFWLSAFFVVYCARPEDWIPGLRFFPLAKITAILAIWGLFTALGRTKR
Ga0209415_104311321	3300027905	Peatlands Soil	VAIGDTGNGNDNRVAAEVRGRRMSFRAADPTKNAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAILAMWGL
Ga0302227_104040062	3300028795	Palsa	VAAIGDNGNNGNVTTTDILGRRVPVKIADPTRKAFFWLLGFFVVYCARPEDYIPGLKYLPLAKIT
Ga0302222_101165951	3300028798	Palsa	VATGDNGNLAPAQLLPGRRTGIQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILAMWGLFKSVGRTKRTLKDLPTEARLLITMIGLLL
Ga0246001_10829522	3300029889	Peat	VAISDNGSGNVVPAEVSRRRTSFRAADPTKNAFFWLSGFFVVYCARPEDWVPGLKYFPLAKITAILAMWGLFTALGKTKRTIKDLPKESKLL
Ga0302179_100078671	3300030058	Palsa	VATGDNGNLAPAQLLPGRRTGIQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKIT
Ga0302207_11246841	3300030230	Fen	VAIGDSGTATAGDVLGRRTAVQFADPTKSAFLWLSGFYVVYCARPEDWIPGLKLFPLAKITAILAIWGLLNSLGRT
Ga0311353_105882091	3300030399	Palsa	VAAIGDNGNNGNVTTTDILGRRVPVKIADPTRKAFFWLLGFFVVYCARPEDYIPGLKYLPLAKITAILAMWGLFTALGKTKRTYKD
Ga0311372_104672361	3300030520	Palsa	VATGDNGNLAPAQLLPGRRTGIQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILA
Ga0311357_111998771	3300030524	Palsa	VATGDNGNLAPAQLLPGRRTGIQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILAMWGLFKSVGRTKRTLKDLPTEARLLITMI
Ga0265339_100663451	3300031249	Rhizosphere	VAIGENNNATPAEMLPGRRTSFQIADPTKGAFFWLSAFFVVYCARPEDWIPGLKLFPLAKITAILAMWGLFNSLGRTKRTFKNLPKEA
Ga0302326_114956072	3300031525	Palsa	VATGDNGNPTPAQLLPGRRSGTQESDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAILAMWGLFKSVGRTKRTLKDLPTEARLLITMIVLL
Ga0310686_1165876141	3300031708	Soil	VAIRDNGDNDTITAADVLGRRTSFKAADPTKRAFFWLCAFFVVYCARPEDWIPGLEYLPLAKITAIFAMWGLFTAL
Ga0307475_108416432	3300031754	Hardwood Forest Soil	VVTGDNGNALPAEASGRRISFRASDPTRMAFFWLSAFFVVYCARPEDWIPGLKLLPLAKITAILAMWGLFTSLGRTKRTFKH
Ga0311301_127436082	3300032160	Peatlands Soil	VAISDNVNGNGNIVPAEVSGSRTSFRAADPTKNAFFWLSGFFVVYCARPEDWVPGLKFFPLAKITAILAMWGLFTALGRTKRTMKDLPKEAKLLL
Ga0307471_1001610991	3300032180	Hardwood Forest Soil	VAIGDHGTNTNLATAEVTGRRLSVRMGDPTRNAFFWLSAFFVVYCARPEDWVPGLRFFPLAKITAILAMWGLFTALGKTKRTLRDLPKEARLLL
Ga0335085_100405101	3300032770	Soil	VDNRNNTMAMSVPVPFRRRIATALDPTKTAFFWLSAFFVVYCARPEDWIPGLKYAPLAKITAVLAMWGLFQSIGRTKRT
Ga0335079_116239022	3300032783	Soil	VVIGNNGGVAIESLPGRRTSFQAADPTKRAFFWLSAFFVVYCARPEDWIPG
Ga0335080_108679181	3300032828	Soil	VPTATDITPPQTDRLGRRKVRILGDPTKSAFFWLSMFFVVYCARPEDWLPGLRIFPLAKITAICAMWGLYNSMRVTRRTLNDLPKEAILLLALTG
Ga0335076_110870871	3300032955	Soil	VVIGNNGGVAIESLPGRRTSFQAADPTKRAFFWLSAFFVVYCARPEDWIPGLKVVPLAKITAILALWGLFNSLGRTKRTLKDLPKEARLLFVMIVL
Ga0326726_105004422	3300033433	Peat Soil	VGIGSSETRMTGDAIGRRPAFRVADLSKSAFFWLSGFFVVYCARPEDWIPGLRYFPLAKITAILAMWAL
Ga0334815_040664_307_579	3300033797	Soil	VKSRNEGFVAIGDSGTATAGDVLGRRTAVQFADPTKSAFLWLSGFYVVYCARPEDWIPGLKLFPLAKITAILAIWGLLNSLGRTKRTFKDV
Ga0334818_058688_409_567	3300033821	Soil	MAIGDHGNIVPAEISGRRTSFRAADPTSQAFFWLCGFFVVYCTRFEDFIPGLS
Ga0371488_0300469_475_768	3300033983	Peat Soil	VAIGDNGTVTTEALPGRRAASKVVDPTKTAFFWLSCFFVIYCARPEDYIPGLKYIPMAKITAILAAWALFNAAGRTPRHMKDLPKEARLLLIMILTLF
Ga0370484_0062894_745_933	3300034125	Untreated Peat Soil	MAIGDNGNTAPAEVSGRRISFRASDPTKSAFFWLSGFFVVYCARPEDWIPGLKFFPLAKITAI
Ga0370515_0019147_2973_3164	3300034163	Untreated Peat Soil	VATGDNGNLAPAQLLPGRRSGIQEGDPTKGAFFWLSAFFVVYCARPEDWIPGLVLLPLAKITAI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090283

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences