Metagenome / Metatranscriptome Family F090252

Basic Information
Family ID	F090252
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	61 residues
Representative Sequence	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDM
Number of Associated Samples	98
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	96.15 %
% of genes near scaffold ends (potentially truncated)	94.44 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (49.074 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (62.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.111 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98 1JGI26085J52751_10540941 2Ga0055584_1007116912 3Ga0069002_101198242 4Ga0075462_100816593 5Ga0075466_11130633 6Ga0098037_11853881 7Ga0098042_11349463 8Ga0070749_107782133 9Ga0075467_100105197 10Ga0098045_11421463 11Ga0098051_10796161 12Ga0098051_11004523 13Ga0098051_11987491 14Ga0075468_101194631 15Ga0099849_11712763 16Ga0099849_13737072 17Ga0099847_12028153 18Ga0102828_11026471 19Ga0102954_12208343 20Ga0102963_11938823 21Ga0118729_10853784 22Ga0115547_10445384 23Ga0115005_107432693 24Ga0115557_13312811 25Ga0115571_12827991 26Ga0118731_1127943241 27Ga0114922_100974721 28Ga0114922_101037194 29Ga0160423_100317841 30Ga0182046_15802426 31Ga0182046_15915823 32Ga0181373_10387751 33Ga0181401_11222771 34Ga0181419_11321862 35Ga0181415_11336411 36Ga0187218_10308461 37Ga0181400_12103493 38Ga0181382_10008731 39Ga0181382_10548663 40Ga0181385_11087041 41Ga0181413_11884671 42Ga0181395_12070471 43Ga0181380_12589163 44Ga0181379_12655221 45Ga0181571_105114171 46Ga0181576_108913262 47Ga0181569_103631803 48Ga0181600_102409871 49Ga0181566_103169183 50Ga0181562_104316791 51Ga0181575_101313421 52Ga0213867_10609833 53Ga0213865_102873763 54Ga0213866_102294791 55Ga0222717_106503732 56Ga0222716_107196932 57Ga0222715_1000627310 58Ga0222715_100486726 59Ga0222715_106313071 60Ga0196897_10285983 61Ga0212022_10340061 62Ga0212027_10271413 63Ga0196903_10072273 64Ga0196899_10150871 65Ga0255771_10461505 66Ga0255756_10102801 67Ga0255783_101804313 68Ga0255753_12149873 69Ga0255769_103478081 70Ga0255782_104722412 71Ga0228673_10510981 72Ga0228623_10816201 73Ga0255049_100928151 74Ga0255048_104906121 75Ga0255047_103946171 76Ga0207905_10476101 77Ga0208667_10475711 78Ga0208667_10695242 79Ga0208666_10333671 80Ga0208919_11100983 81Ga0209232_11251221 82Ga0209195_10899533 83Ga0209138_11280483 84Ga0209405_11301431 85Ga0209194_11242881 86Ga0208162_10773881 87Ga0209653_11737663 88Ga0209532_11416491 89Ga0209771_11282893 90Ga0208767_12597261 91Ga0209199_10761013 92Ga0209603_11031881 93Ga0209308_102884041 94Ga0209534_101270741 95Ga0209534_103205761 96Ga0208644_11478943 97Ga0228622_10206541 98Ga0247592_11366403 99Ga0233395_11083931 100Ga0209037_11189643 101Ga0233413_105012341 102Ga0228643_10797361 103Ga0307986_101521261 104Ga0307377_103917643 105Ga0315331_103481401 106Ga0315321_105767441 107Ga0316201_100661401 108Ga0348337_099756_774_950
Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98 1JGI26085J52751_10540941 2Ga0055584_1007116912 3Ga0069002_101198242 4Ga0075462_100816593 5Ga0075466_11130633 6Ga0098037_11853881 7Ga0098042_11349463 8Ga0070749_107782133 9Ga0075467_100105197 10Ga0099849_13737072 11Ga0102828_11026471 12Ga0102954_12208343 13Ga0118729_10853784 14Ga0115557_13312811 15Ga0115571_12827991 16Ga0182046_15802426 17Ga0181419_11321862 18Ga0181382_10008731 19Ga0181576_108913262 20Ga0181562_104316791 21Ga0213866_102294791 22Ga0212027_10271413 23Ga0255753_12149873 24Ga0207905_10476101 25Ga0208667_10475711 26Ga0208667_10695242 27Ga0208919_11100983 28Ga0209232_11251221 29Ga0209653_11737663 30Ga0209532_11416491 31Ga0209771_11282893 32Ga0307986_101521261 33Ga0315331_103481401
Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58 1Ga0181400_12103493 2Ga0055584_1007116912 3Ga0069002_101198242 4Ga0075466_11130633 5Ga0098037_11853881 6Ga0098042_11349463 7Ga0070749_107782133 8Ga0099849_11712763 9Ga0102828_11026471 10Ga0118729_10853784 11Ga0115557_13312811 12Ga0118731_1127943241 13Ga0182046_15915823 14Ga0181419_11321862 15Ga0181382_10548663 16Ga0181395_12070471 17Ga0181562_104316791 18Ga0213866_102294791 19Ga0222717_106503732 20Ga0212027_10271413 21Ga0255756_10102801 22Ga0207905_10476101 23Ga0208667_10475711 24Ga0209532_11416491 25Ga0209771_11282893 26Ga0209603_11031881 27Ga0209308_102884041 28Ga0233395_11083931 29Ga0209037_11189643 30Ga0307986_101521261 31Ga0315331_103481401 32Ga0316201_100661401 33Ga0348337_099756_774_950
Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 15.12% β-sheet: 19.77% Coil/Unstructured: 65.12%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
Powered by Feature Viewer

Structure Viewer
WebGL does not seem to be available. This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser. For a list of supported browsers, refer to http://caniuse.com/#feat=webgl. Load File(s)

Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.11 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	49.07 %
Unclassified	root	N/A	38.89 %
Viruses	superkingdom	All Organisms → Viruses	12.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.07 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	46.30 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.70 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	38.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Unclassified	root	N/A	38.89 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.85 %

Name	Rank	Taxonomy	Distribution
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.85 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	38.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	2.78 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	1.85 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	38.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	2.78 %
Unclassified	root	N/A	38.89 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Ruegeria	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria	2.78 %
Unclassified	root	N/A	38.89 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	38.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.85 %

Name	Rank	Taxonomy	Distribution
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	38.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Unclassified	root	N/A	38.89 %
unclassified Ruegeria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria	2.78 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.85 %

Name	Rank	Taxonomy	Distribution
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	38.89 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	10.19 %
Ruegeria sp. HKCCA4812	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Ruegeria → unclassified Ruegeria → Ruegeria sp. HKCCA4812	2.78 %
Unclassified	root	N/A	38.89 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1.85 %

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300024517\|Ga0255049_10092815	All Organisms → Viruses → Predicted Viral	1370	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10490612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	594	Open in IMG/M
(restricted) 3300024520\|Ga0255047_10394617	Not Available	697	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10501234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	537	Open in IMG/M
3300003908\|JGI26085J52751_1054094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	531	Open in IMG/M
3300004097\|Ga0055584_100711691	Not Available	1050	Open in IMG/M
3300005214\|Ga0069002_10119824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	678	Open in IMG/M
3300006027\|Ga0075462_10081659	Not Available	1013	Open in IMG/M
3300006029\|Ga0075466_1113063	Not Available	726	Open in IMG/M
3300006737\|Ga0098037_1185388	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M

Showing 1 to 10 of 104 entries

Previous1 2 3 4 5…11Next

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.07%
Terrestrial	Environmental → Terrestrial	0.93%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	97.22%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	1.85%
Soil	Environmental → Terrestrial → Soil	0.93%

Habitat	Taxonomy	Distribution
Clay	Environmental → Terrestrial → Soil → Clay	0.93%
Coastal	Environmental → Aquatic → Marine → Coastal	26.85%
Inlet	Environmental → Aquatic → Marine → Inlet	3.70%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	21.30%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.70%
Oceanic	Environmental → Aquatic → Marine → Oceanic	15.74%
Pelagic	Environmental → Aquatic → Marine → Pelagic	8.33%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	1.85%
Strait	Environmental → Aquatic → Marine → Strait	11.11%
Unclassified	Environmental → Aquatic → Marine → Unclassified	5.56%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.93%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	13.89%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	1.85%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.85%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	25.00%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	12.96%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	11.11%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	8.33%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	6.48%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	5.56%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	15.74%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	1.85%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.93%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	4.63%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	12.96%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	4.63%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.93%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	8.33%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	3.70%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	13.89%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	11.11%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	8.33%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.70%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	1.85%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.93%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.93%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.93%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.93%

Visualization
Download SVG Download PNG Download CSV
Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003908	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_125SG_5_DNA	Environmental	Open in IMG/M
3300004097	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaG	Environmental	Open in IMG/M
3300005214	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordC_D2	Environmental	Open in IMG/M
3300006027	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA	Environmental	Open in IMG/M
3300006029	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNA	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006803	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_>0.8_DNA	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M

Showing 1 to 10 of 98 entries

Previous1 2 3 4 5…10Next

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26085J52751_10540941	3300003908	Marine	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVWLKEAGVAWTDTQAVKD
Ga0055584_1007116912	3300004097	Pelagic Marine	MQKAVHSTKIAEKLSIEGDNIVIKKTFDASGMLRDAQQAREVTENSFASDYKHVGNVDMG
Ga0069002_101198242	3300005214	Natural And Restored Wetlands	MINTSTKISENISFDNDDNMVIKRTFDASHMLKDAAQAREVTKNSFAPTTSTLAMLT*
Ga0075462_100816593	3300006027	Aqueous	MQKAAHSTKIAEKFSFEGDKIVVKKTFDMSHVLKDAQHARDVTQNSFGSDYKH
Ga0075466_11130633	3300006029	Aqueous	MQKAAHSTKLSEKYSFEGDNLIVKKTFDASHMLNDAKHAREVTQNSFGSDYKHVGNVDMGLLGIWLKEAGVSW
Ga0098037_11853881	3300006737	Marine	MANTSTKVGEKYIFEDDKIVVKQTYDASHMLKDAQHAREVTENSFGSDYKHVGNVDMALLNVWLKE
Ga0098042_11349463	3300006749	Marine	MSLNTSTKISEKVSFEGDNMIIKKTFDGSQMLKDAAHAREITQNSFGSDYKHIGHVDFALLGVWLKEAGVEWTDTQAI
Ga0070749_107782133	3300006802	Aqueous	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVTQNSFGSDYKHVGNVDMGLLSVW
Ga0075467_100105197	3300006803	Aqueous	MINTSTKISENISFDSEDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVD
Ga0098045_11421463	3300006922	Marine	MQKAAHSTKIAEKFSFEDDKIVVKKTFDMSHVLNDVQHAREVTQNSFGSDYKHVGNVDMGQLGVWLKEA
Ga0098051_10796161	3300006924	Marine	MINTSTKISEKITFDDEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMA
Ga0098051_11004523	3300006924	Marine	MINTSTKVSEKITFDNSDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLAVW
Ga0098051_11987491	3300006924	Marine	MQKAAHSTKIAEKFSFEDDKIIVKKTFDMSHVLNDVQHAREVTQNSFGSDYKHVGNVDMGQLGV
Ga0075468_101194631	3300007229	Aqueous	MQKAAHSTKIAEKFSFEGDKIVVKKTFDMSHVLKDAQHAREVTQNSFGSDYKHVGN
Ga0099849_11712763	3300007539	Aqueous	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVWLKEAGV
Ga0099849_13737072	3300007539	Aqueous	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLRDVAQARVVAQNSFGSDYK
Ga0099847_12028153	3300007540	Aqueous	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDL
Ga0102828_11026471	3300007559	Estuarine	MQKSNLSNKVDEKYFFEDDMLLIKKTFDATPMLEDAKHARETTENAFGSDYKHVGNVDMG
Ga0102954_12208343	3300007778	Water	MSNLSTNINQSVKFDDDKLIIKQTYDATHMLDDARHAREHDLNEFASDYKHVGNVDMGLVNIW
Ga0102963_11938823	3300009001	Pond Water	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVAQNSFGSDYKHVGNVDMGLLAI
Ga0118729_10853784	3300009130	Marine	MQRPPHSTEISKRVTFEDDKIIIKRTHDASHMLRDAQQAREVAENSFGSDYKLAGV
Ga0115547_10445384	3300009426	Pelagic Marine	MINTSTKISENISFDNDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDY
Ga0115005_107432693	3300009432	Marine	MQTSNLSNKVDEKYFFEDDMLLIKKTFDATPMLEDAKHARETTENAFGSDYKHV
Ga0115557_13312811	3300009443	Pelagic Marine	MSLNTSTKISEKVSFEGDNVVIKKTFDGSQMLKDAAHAREVTQNSFGSDYKHVGNVDMGMLS
Ga0115571_12827991	3300009495	Pelagic Marine	MANTSTKVAESVTFNGDQMLIKKTHDASVMLKDAEYARDRTENSFGSDYKHVGNVDMALLNI
Ga0118731_1127943241	3300010392	Marine	MQKAAHSTKIAEKFSFEGDKIVVKKTFDMSHVLKDAQHAREVTQNSFGSDHKHVGNVDMGQLGVWLKEAGVS
Ga0114922_100974721	3300011118	Deep Subsurface	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVTQNSFGSDYKHVGNVDMGLLAIWLKE
Ga0114922_101037194	3300011118	Deep Subsurface	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVWL
Ga0160423_100317841	3300012920	Surface Seawater	MANTSTKVGEKYIFEDDKIVVKQTYDASHMLRDAQHAREVTENSFGSDYKH
Ga0182046_15802426	3300016776	Salt Marsh	MSNLSTKISESVKFDDDKLIIKKTHDATSMLDDARHAREHAP
Ga0182046_15915823	3300016776	Salt Marsh	MPNLSTKISESIKFDDDKLIIKKTHDATSMLDDARHAREHAPNAFASD
Ga0181373_10387751	3300017721	Marine	MASTSTKVAESVTFNGDQMLIKKTHDASVMLKDAEYARDRTENSFGSDYKH
Ga0181401_11222771	3300017727	Seawater	MQKAAHSTKISESFSFEGENLVIKKTFDASHMLNDAKQARELTENSFGSDYKHVGNVDMGLLSIWLK
Ga0181419_11321862	3300017728	Seawater	MSGLSNKINENMYVDDDKLIIKRTHNANQMLEDAAHAREVTDNSFGTDYKHVGNVDMALLGVWLKEAGVEWTDTHAVKEVLKKKLMSNEFKS
Ga0181415_11336411	3300017732	Seawater	MANTSTKVGEKYTFEDDKIIIKQTYDASHMLKDAQQAREVTQNSFGSDYKHVGNVDMALLNVWLKEA
Ga0187218_10308461	3300017737	Seawater	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAHAREKAENSFASDYKHVGNVDMALLA
Ga0181400_12103493	3300017752	Seawater	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDM
Ga0181382_10008731	3300017756	Seawater	MPNLSTKISEKITFDDDKLIIKKTHDASVALKDAEYARQRTDNSFGSDYKH
Ga0181382_10548663	3300017756	Seawater	MANTSTKVDEKYAFEDDKIIIKQTYDASHMLKDAQQAREVTQNSFGSDYKHVGNVDMALLNVWLKEAGVQWTDTQAVKDVL
Ga0181385_11087041	3300017764	Seawater	MANTSTKVSEKYTFEDDKIVIKQTYDASHMLKDAKHAREVTQNSFGSDYKHVGNVDM
Ga0181413_11884671	3300017765	Seawater	MANTSTKVGEKYTFEDDKIVIKQTYDASHMLKDAQRAREVTQNSFGSDYKHVGNVDMALLNVWLKEAGVQWTDTQ
Ga0181395_12070471	3300017779	Seawater	MQKAAHSTKISESFSFEGENLVIKKTFDASHMLNDAKQARELTENSFGSDYKHVGNVDMGLLSIWLKEAGVSWG
Ga0181380_12589163	3300017782	Seawater	MQKAAHSTKIAEKFSFEDDKIVVKKTFDMSHVLKDAQHAREVTQNSFGSDYKHVGNVDMGQLGVWLK
Ga0181379_12655221	3300017783	Seawater	MINTSTKISENISFDGDDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLAVWLKEAGVA
Ga0181571_105114171	3300017957	Salt Marsh	MSNLSTKINQSVNFDDDKLIIKQTYDATHMLDDARHAREHAPNAFASDYKHVGNVDMA
Ga0181576_108913262	3300017985	Salt Marsh	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAEYAREKSPNAFASDYKHVG
Ga0181569_103631803	3300017986	Salt Marsh	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMA
Ga0181600_102409871	3300018036	Salt Marsh	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVTQNSFGSDYKHVGNVDMGLLSVWL
Ga0181566_103169183	3300018426	Salt Marsh	MVNTSTKIKETIKFEDDKLIIKKTHDASVALKDAEYAREKSPNAFA
Ga0181562_104316791	3300019459	Salt Marsh	MSNLSTKISESVKFDDDKLIIKKTHDATNMLEDARYARERAPNAFASDYKHV
Ga0181575_101313421	3300020055	Salt Marsh	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMAML
Ga0213867_10609833	3300021335	Seawater	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYK
Ga0213865_102873763	3300021373	Seawater	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVTQNSFGSDYKHVGNVDM
Ga0213866_102294791	3300021425	Seawater	VSNLSTKISEKVIFDDDKMIIKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMA
Ga0222717_106503732	3300021957	Estuarine Water	MQKAAHSTKLSETYSFEDDNLVIKKTFDASHMLNDAQQARELTENSFGSDYKHVGNVDMGLLSIWLKEAGVSWTD
Ga0222716_107196932	3300021959	Estuarine Water	MVNTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMAM
Ga0222715_1000627310	3300021960	Estuarine Water	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFA
Ga0222715_100486726	3300021960	Estuarine Water	MANTSTKISEKITFDDDKMIIKKTHDASVALKDAAHAREVTQNSFGSDYKHVGN
Ga0222715_106313071	3300021960	Estuarine Water	MANTSTKIKETIKFEDDKLIIKKTHDASVALRDAQQARELSPNAFA
Ga0196897_10285983	3300022158	Aqueous	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYKHVG
Ga0212022_10340061	3300022164	Aqueous	MQKAAHSTKLSEKYSFEGDNLIVKKTFDASHMLNDAKHAREVTQNSFGSDYKHVGNV
Ga0212027_10271413	3300022168	Aqueous	MANTSTKIKEKIYVDGDQIIVKKTHDATVALKDAEYARQRTENSFASDYKHVGNVDMAML
Ga0196903_10072273	3300022169	Aqueous	MLKANHSTKVSEKFTVDDDKIIIKKTFDAPHMLKDAAQAREVTQNSFGSDYKHVGNVD
Ga0196899_10150871	3300022187	Aqueous	MANTSTKIKEKIYVDGDQIIVKKTHDATVALKDAEYARQRTENSFASDYKHVGNVDMAM
Ga0255771_10461505	3300022900	Salt Marsh	MSNLSTKISESVKFDDDKLIIKKTHDATSMLDDARHAREHAPNAF
Ga0255756_10102801	3300022905	Salt Marsh	MSNLSTKINQSVKFDDDKLIIKQTYDATHMLDDARHAREHAPNAFASDYKHVGNVDMALVNIWLKEAGVQW
Ga0255783_101804313	3300022923	Salt Marsh	MSNLSTKISESVKFDDDKLIIKKTHDATNMLEDARYARERAPNAFASDY
Ga0255753_12149873	3300022926	Salt Marsh	MTAVNSTKISEQISFDDDKLIIKKTHDASHMLDDARYAREMS
Ga0255769_103478081	3300022927	Salt Marsh	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVTQNSFGSDYKHVG
Ga0255782_104722412	3300023105	Salt Marsh	MVNTSTKIKETIKFEDDKLIIKKTHDASVALKDAEYAREKSPNAFASDYKHV
Ga0228673_10510981	3300024242	Seawater	MINTSTKISENISFDGDDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMAMLAVWLKEAGVAWTDTQAVKDVLK
Ga0228623_10816201	3300024267	Seawater	MINTSTKVSEKITFDNDDNMVIKRTFDASHMLKDAAQAREVAQNSFGSDYKHVGNVDMALLAVWLKEAGVAWTDTQAVK
(restricted) Ga0255049_100928151	3300024517	Seawater	MINTSTKISEKITFDSEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMAL
(restricted) Ga0255048_104906121	3300024518	Seawater	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLA
(restricted) Ga0255047_103946171	3300024520	Seawater	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGN
Ga0207905_10476101	3300025048	Marine	MSKVSETHWFEDDKIIIKKTHDASIALEDAKYARDVTSNAFGSDYKHVGNVDAALVTNWL
Ga0208667_10475711	3300025070	Marine	MPNLSTKISEKITFDDDKLIIKKTHDASVALKDAAHAREVTDNSFGSDYKHIGNVDMAMLNIW
Ga0208667_10695242	3300025070	Marine	MANTSTKIKETIKFEDDKLIVKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMAMLNNWLKEAGV
Ga0208666_10333671	3300025102	Marine	MQKAAHSTKIAEKFSFEDDKIVVKKTFDMSHVLKDAQHAREVTQNSFGSDYKH
Ga0208919_11100983	3300025128	Marine	MANTSTKVSEKYTFEDDKIVIKQTYDASHMLKDAKHAREVTQNSFGSDYKHVG
Ga0209232_11251221	3300025132	Marine	MPSHSTKIKETVTFDDEKMIIKNTFDATHMLKDAEQAREVTGNGFGSDYKHVGNV
Ga0209195_10899533	3300025590	Pelagic Marine	MLKANHSTKVSEKFTVDDDKIIIKKTFDASHMLKDAAQAREVAQNSFGSDYKHVGNVDM
Ga0209138_11280483	3300025617	Marine	MINTSTKISEKITFDGDDNMVIKRTFDASHMLKDAAQAREVTQNSFGSDYKHVGNVDMALLAVWLKEAGVAWTDTQAVKDV
Ga0209405_11301431	3300025620	Pelagic Marine	MSLNTSTKISEKVSFEGDNVVIKKTFDGSQMLKDAAHAREVTQNSFGSDYK
Ga0209194_11242881	3300025632	Pelagic Marine	MINTSTKISENISFDNDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVWLKEAGVAWT
Ga0208162_10773881	3300025674	Aqueous	MRHGKMANTSTKIKEKIYVDGDQIIVKKTHDATVALKDAEYARQRTENSFASDYKHVGNV
Ga0209653_11737663	3300025695	Marine	MQKAAHSTKLSEKYIFEDDKLLIKKTFDASHMLNDAKQARELTENSFGSDYKHVGN
Ga0209532_11416491	3300025696	Pelagic Marine	MQSAPHSTKIAERFTFEDDKIIIKRTHDASHMLKDAQQARELTENSFGSDYKLAGVVDMALLN
Ga0209771_11282893	3300025701	Marine	MQKAVHSSKVAEKFSFEGDNLVIKKTFDASHMLNDAKHAREVTQNSFGSDYKHVGNVDLALLGV
Ga0208767_12597261	3300025769	Aqueous	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVWLKEAGVAWTDTQAV
Ga0209199_10761013	3300025809	Pelagic Marine	MINTSTKISENISFDNDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVDLALLNVW
Ga0209603_11031881	3300025849	Pelagic Marine	MQKAAHSTKLSEKYTFEGDELIVKKTFDASHMLNDAKHARETAENAFGSDYKHVGNVDMGLLGAWLKEAGVSWSDTEAV
Ga0209308_102884041	3300025869	Pelagic Marine	MANTSTKVAESVTFNGDQMLIKKTHDASVMLKDAEYARDRTENSFGSDYKHVGNVDMAL
Ga0209534_101270741	3300025880	Pelagic Marine	MSLNTSTKISEKVSFEGDNVVIKKTFDGSQMLKDAAHAREVTQNSFGSDYKHVGNVDMGM
Ga0209534_103205761	3300025880	Pelagic Marine	MINTSTKISENISFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFASDYKHVGNVD
Ga0208644_11478943	3300025889	Aqueous	MRHGKMANTSTKIKEKIYVDGDQIIVKKTHDATVALKDAEYARQRTENSFASDYKHVGNVDMAM
Ga0228622_10206541	3300026479	Seawater	MINTSTKISENISFDADDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVD
Ga0247592_11366403	3300026500	Seawater	MINTSTKISEKITFDGEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLAVWLKEA
Ga0233395_11083931	3300026511	Seawater	MINTSTKVSEKITFDNDDNMVIKRTFDASHMLKDAAQASEVAQNSFGSDYKHVGNVDMALLAVWLKEAGVAWTDTQAVKD
Ga0209037_11189643	3300027612	Marine	MQKAVHSTKLSEKVSFEDDKLIIKKTFDASHMLNDAKHAREVTQNSFASDYKHVGNVDLGLLGVWLKEAGVGWEDTEAMK
(restricted) Ga0233413_105012341	3300027996	Seawater	MINTSTKISEKITFDSDDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLAVWLKEAGVAWTDTQAV
Ga0228643_10797361	3300028396	Seawater	MQKAAHSTKIAEKFSFEGDKIVVKKTFDMSHVLKDAQHAREVTQNSFGSDYKHVGNVDMGQLGV
Ga0307986_101521261	3300031659	Marine	MSLPANSTKLSQKVSFEGDNMVIKTTFDASHMLRDVKQARETTENAFGSDYKHVGNVDMGLLAIWMKEAG
Ga0307377_103917643	3300031673	Soil	MQKAVHSTKLSEKVSFDDDKLIIKKTFDASHMLNDAKHAREVTQNSFASDYKHVGN
Ga0315331_103481401	3300031774	Seawater	MPSHSTKIKETVTFDDEKMTIKNTFDATHMLKDAEQAREVTGNDFGSDYKHVGNVDMALLGVWLKEAGVQWTDTQAVKDVL
Ga0315321_105767441	3300032088	Seawater	MINTSTKISEKITFDSEDNMVIKRTFDASHMLKDAAQAREVTKNSFGSDYKHVGNVDMALLAVWLKEAGVAWTDTQAVK
Ga0316201_100661401	3300032136	Worm Burrow	MVNTSTKIKETIKFEDDKIIIKKTHDASVALKDAQQARELAPNSFGSDYK
Ga0348337_099756_774_950	3300034418	Aqueous	MANTSTKIKETIKFEDDKLIIKKTHDASVALKDAQQARELSPNAFASDYKHVGNVDMAM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters