NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F090217

Metagenome Family F090217

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090217
Family Type Metagenome
Number of Sequences 108
Average Sequence Length 49 residues
Representative Sequence AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Number of Associated Samples 71
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.81 %
% of genes near scaffold ends (potentially truncated) 91.67 %
% of genes from short scaffolds (< 2000 bps) 85.19 %
Associated GOLD sequencing projects 62
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (62.963 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(33.333 % of family members)
Environment Ontology (ENVO) Unclassified
(62.963 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.815 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.
1AF_2010_repII_A100DRAFT_10501901
2Ga0066395_103463811
3Ga0066395_104002081
4Ga0066388_1000716158
5Ga0066388_1003266311
6Ga0066708_105454602
7Ga0066903_1012754611
8Ga0066903_1023837772
9Ga0066903_1028720611
10Ga0066903_1051211471
11Ga0066903_1056894891
12Ga0066903_1067967882
13Ga0066903_1072087382
14Ga0066903_1084708781
15Ga0066652_1019335472
16Ga0075026_1002655061
17Ga0079222_112642312
18Ga0126384_118214502
19Ga0126370_103323401
20Ga0126376_103452703
21Ga0126376_108178381
22Ga0126376_131082482
23Ga0126372_102959101
24Ga0126372_114158211
25Ga0126378_114633332
26Ga0126379_105951562
27Ga0126379_124094652
28Ga0126379_124481841
29Ga0126379_128818452
30Ga0126381_1016121512
31Ga0126383_110107473
32Ga0126383_122446822
33Ga0126369_110118731
34Ga0182036_105571102
35Ga0182036_117290212
36Ga0182041_122575582
37Ga0182033_117348221
38Ga0182033_121148041
39Ga0182035_110052872
40Ga0182034_109890612
41Ga0182034_114688661
42Ga0182040_104968221
43Ga0182040_106806682
44Ga0182037_100334048
45Ga0182037_107154122
46Ga0182037_112571181
47Ga0182039_101333993
48Ga0182039_103183411
49Ga0182038_109969521
50Ga0187777_101925161
51Ga0187777_107324312
52Ga0210407_105036042
53Ga0126371_135601402
54Ga0207664_119623891
55Ga0209465_103000651
56Ga0170818_1020972191
57Ga0318534_100185855
58Ga0318538_104895551
59Ga0318571_102408662
60Ga0318528_100342124
61Ga0318528_100491063
62Ga0318561_103029802
63Ga0318574_102195372
64Ga0306917_105778883
65Ga0306917_115177492
66Ga0318493_103108921
67Ga0318502_104039391
68Ga0318537_100047445
69Ga0318535_100153921
70Ga0318509_100593903
71Ga0318546_101768111
72Ga0318498_101178521
73Ga0318498_105457302
74Ga0318548_101174393
75Ga0318548_106750322
76Ga0318503_102331202
77Ga0318503_102683892
78Ga0318568_108340192
79Ga0310917_100852171
80Ga0318517_101564393
81Ga0306919_101306494
82Ga0306919_101722241
83Ga0306919_101946823
84Ga0306919_103444252
85Ga0318544_100443325
86Ga0306925_100322437
87Ga0306925_108623283
88Ga0318536_102220562
89Ga0306923_100442897
90Ga0306921_122605021
91Ga0310913_110501602
92Ga0310910_102465641
93Ga0310910_105790942
94Ga0306926_101018137
95Ga0306926_126669171
96Ga0306922_100560336
97Ga0306922_110806631
98Ga0318563_107026081
99Ga0318507_103687651
100Ga0318559_104641842
101Ga0318545_103621231
102Ga0318558_100447371
103Ga0318532_102441511
104Ga0318570_104145712
105Ga0318533_103060881
106Ga0306924_112863542
107Ga0306924_126063831
108Ga0306920_1009591531
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 89.80%    β-sheet: 0.00%    Coil/Unstructured: 10.20%
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51015202530354045AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAPExtracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
63.0%37.0%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Watersheds
Tropical Forest Soil
Agricultural Soil
Soil
Soil
Forest Soil
Soil
Tropical Peatland
Tropical Forest Soil
Agricultural Soil
15.7%33.3%30.6%12.0%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AF_2010_repII_A100DRAFT_105019013300000655Forest SoilAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP*
Ga0066395_1034638113300004633Tropical Forest SoilAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP*
Ga0066395_1040020813300004633Tropical Forest SoilAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0066388_10007161583300005332Tropical Forest SoilLDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYGAGP*
Ga0066388_10032663113300005332Tropical Forest SoilLSLLAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF*
Ga0066708_1054546023300005576SoilVFAPLAVAAIVLAYLDRLLWLAALFVALPSANLLLGMIMFTIGIMIYGF*
Ga0066903_10127546113300005764Tropical Forest SoilAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP*
Ga0066903_10238377723300005764Tropical Forest SoilLLAQQVIFGPLAVTAIVLAILDKFLWLGAVFVAVPSANLLMGIIPLIEFTIGVMIYGAAP
Ga0066903_10287206113300005764Tropical Forest SoilSVVGLSLFAEQLLFPALAAAAIVLAYLDRHLWLGAVFVALPPLNFLVSMVAFTIAVMIYGF*
Ga0066903_10512114713300005764Tropical Forest SoilLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP*
Ga0066903_10568948913300005764Tropical Forest SoilPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGGPPNRPLFHL*
Ga0066903_10679678823300005764Tropical Forest SoilLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0066903_10720873823300005764Tropical Forest SoilVLAILDKLLWLGTVFVALPSANLLLGMIPLIEFTIGVMIYGAGP*
Ga0066903_10847087813300005764Tropical Forest SoilIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPIILFTIGVMIYGYGP*
Ga0066652_10193354723300006046SoilLGLMLLAQELVFAPLAVTAIVLAYLDRHLWLAALFVALPPANLLLGMIMFTIGIMIYGF*
Ga0075026_10026550613300006057WatershedsAYLDRHLWLAALFVALPPANLLLGMIMFTIGIMIYGF*
Ga0079222_1126423123300006755Agricultural SoilAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAGP*
Ga0126384_1182145023300010046Tropical Forest SoilDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP*
Ga0126370_1033234013300010358Tropical Forest SoilKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126376_1034527033300010359Tropical Forest SoilFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126376_1081783813300010359Tropical Forest SoilQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF*
Ga0126376_1310824823300010359Tropical Forest SoilFGPLAVSAIVLAILDKLLWSGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP*
Ga0126372_1029591013300010360Tropical Forest SoilVLAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126372_1141582113300010360Tropical Forest SoilQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP*
Ga0126378_1146333323300010361Tropical Forest SoilGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP*
Ga0126379_1059515623300010366Tropical Forest SoilPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126379_1240946523300010366Tropical Forest SoilAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP*
Ga0126379_1244818413300010366Tropical Forest SoilIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126379_1288184523300010366Tropical Forest SoilFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP*
Ga0126381_10161215123300010376Tropical Forest SoilLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANMLLGMLPIILFTIAVIISGRAAP
Ga0126383_1101074733300010398Tropical Forest SoilLWLGAVFVALPSANLLLGMIPLILFTIAVIFSGRAAP*
Ga0126383_1224468223300010398Tropical Forest SoilLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0126369_1101187313300012971Tropical Forest SoilILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP*
Ga0182036_1055711023300016270SoilIVLAILDKLLWLGAVFVALPSANLLLGMVPLILFTIGVMIYGAAP
Ga0182036_1172902123300016270SoilAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGTAP
Ga0182041_1225755823300016294SoilWLGVVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0182033_1173482213300016319SoilVLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGNIIYGAGP
Ga0182033_1211480413300016319SoilILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP
Ga0182035_1100528723300016341SoilAQQVIFGPLAVTAIVLAILDKLLWLGAGFVALPSANLLLGMIPLILFTIGVMIYGAGP
Ga0182034_1098906123300016371SoilAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYWAAP
Ga0182034_1146886613300016371SoilQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAAP
Ga0182040_1049682213300016387SoilLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0182040_1068066823300016387SoilDFALGGLSLLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVAVPSANLLWGMIPLILFTMG
Ga0182037_1003340483300016404SoilQVIFGPLAVTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP
Ga0182037_1071541223300016404SoilGPLAVTAIVLAVLDKLLWLGAVFVALPSPNLLLGMIPLILFTIGVIIYGAAP
Ga0182037_1125711813300016404SoilIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIAVIILGRAAP
Ga0182039_1013339933300016422SoilAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP
Ga0182039_1031834113300016422SoilLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP
Ga0182038_1099695213300016445SoilAIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP
Ga0187777_1019251613300017974Tropical PeatlandQLIFPLLAVAAIVLARLDRHLWLGAIFVALPPTNLILGVIMFTIGIMIYGF
Ga0187777_1073243123300017974Tropical PeatlandSAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGTIPLILFTIGVMIYGAAP
Ga0210407_1050360423300020579SoilSLLGEELVFAPLAVTAIVLACLDRNLWLAALFVALPPANLLLGMIMFTIGIMIYGF
Ga0126371_1356014023300021560Tropical Forest SoilFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP
Ga0207664_1196238913300025929Agricultural SoilVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP
Ga0209465_1030006513300027874Tropical Forest SoilLAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0170818_10209721913300031474Forest SoilAIVLACLDRNLWLAALFVALPPANLLLGMIMFTIGIMIYGF
Ga0318534_1001858553300031544SoilSLLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAA
Ga0318538_1048955513300031546SoilAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318571_1024086623300031549SoilIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318528_1003421243300031561SoilAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318528_1004910633300031561SoilIVLACLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0318561_1030298023300031679SoilVTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318574_1021953723300031680SoilAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP
Ga0306917_1057788833300031719SoilKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP
Ga0306917_1151774923300031719SoilLDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0318493_1031089213300031723SoilLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318502_1040393913300031747SoilLTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318537_1000474453300031763SoilLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318535_1001539213300031764SoilFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318509_1005939033300031768SoilTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318546_1017681113300031771SoilLAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0318498_1011785213300031778SoilLSLLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318498_1054573023300031778SoilQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318548_1011743933300031793SoilVTAIVLAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318548_1067503223300031793SoilVLACLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0318503_1023312023300031794SoilQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318503_1026838923300031794SoilLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318568_1083401923300031819SoilRLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0310917_1008521713300031833SoilLSLLAQQVIFGLAAVTAIVLAILDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAPYAKLGAGKIV
Ga0318517_1015643933300031835SoilVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0306919_1013064943300031879SoilLAQQVIFGPLAVTTIVLAILDKLLWLGAVFVALPSANLLLGMVPLILFTIGVMIYGAAP
Ga0306919_1017222413300031879SoilGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAAP
Ga0306919_1019468233300031879SoilAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0306919_1034442523300031879SoilVTAIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP
Ga0318544_1004433253300031880SoilLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0306925_1003224373300031890SoilLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0306925_1086232833300031890SoilAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP
Ga0318536_1022205623300031893SoilGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0306923_1004428973300031910SoilAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0306921_1226050213300031912SoilAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0310913_1105016023300031945SoilSLLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLFLGMIPIILSTIGVMIYGYG
Ga0310910_1024656413300031946SoilDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP
Ga0310910_1057909423300031946SoilLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP
Ga0306926_1010181373300031954SoilLDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0306926_1266691713300031954SoilVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0306922_1005603363300032001SoilSLLAQQVIFGLAAVTAIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAA
Ga0306922_1108066313300032001SoilLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0318563_1070260813300032009SoilAVTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318507_1036876513300032025SoilLLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318559_1046418423300032039SoilVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318545_1036212313300032042SoilSLLAQQVIFGPLAVTAIVLAILDKLLWLGAGFVALPSANLLLGMIPLILFTIGVMIYGAG
Ga0318558_1004473713300032044SoilLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP
Ga0318532_1024415113300032051SoilLALLAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF
Ga0318570_1041457123300032054SoilVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP
Ga0318533_1030608813300032059SoilFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYGAAP
Ga0306924_1128635423300032076SoilIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP
Ga0306924_1260638313300032076SoilVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP
Ga0306920_10095915313300032261SoilWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP


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