Basic Information | |
---|---|
Family ID | F090217 |
Family Type | Metagenome |
Number of Sequences | 108 |
Average Sequence Length | 49 residues |
Representative Sequence | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Number of Associated Samples | 71 |
Number of Associated Scaffolds | 108 |
Quality Assessment | |
---|---|
Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 3.81 % |
% of genes near scaffold ends (potentially truncated) | 91.67 % |
% of genes from short scaffolds (< 2000 bps) | 85.19 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
---|
|
Powered by Skylign |
Most Common Taxonomy | |
---|---|
Group | Bacteria (62.963 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
---|---|
GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.333 % of family members) |
Environment Ontology (ENVO) | Unclassified (62.963 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (64.815 % of family members) |
⦗Top⦘ |
Full Alignment |
---|
Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78. |
Powered by MSAViewer |
⦗Top⦘ |
Predicted Topology & Secondary Structure | |||||
---|---|---|---|---|---|
Classification: | Transmembrane (alpha-helical) | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 89.80% β-sheet: 0.00% Coil/Unstructured: 10.20% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
|||||
Powered by Feature Viewer |
⦗Top⦘ |
⦗Top⦘ |
Visualization |
---|
All Organisms Unclassified |
Powered by ApexCharts |
⦗Top⦘ |
Visualization |
---|
Watersheds Tropical Forest Soil Agricultural Soil Soil Soil Forest Soil Soil Tropical Peatland Tropical Forest Soil Agricultural Soil |
Powered by ApexCharts |
⦗Top⦘ |
Protein ID | Sample Taxon ID | Habitat | Sequence |
AF_2010_repII_A100DRAFT_10501901 | 3300000655 | Forest Soil | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP* |
Ga0066395_103463811 | 3300004633 | Tropical Forest Soil | AILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP* |
Ga0066395_104002081 | 3300004633 | Tropical Forest Soil | AILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0066388_1000716158 | 3300005332 | Tropical Forest Soil | LDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYGAGP* |
Ga0066388_1003266311 | 3300005332 | Tropical Forest Soil | LSLLAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF* |
Ga0066708_105454602 | 3300005576 | Soil | VFAPLAVAAIVLAYLDRLLWLAALFVALPSANLLLGMIMFTIGIMIYGF* |
Ga0066903_1012754611 | 3300005764 | Tropical Forest Soil | AIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP* |
Ga0066903_1023837772 | 3300005764 | Tropical Forest Soil | LLAQQVIFGPLAVTAIVLAILDKFLWLGAVFVAVPSANLLMGIIPLIEFTIGVMIYGAAP |
Ga0066903_1028720611 | 3300005764 | Tropical Forest Soil | SVVGLSLFAEQLLFPALAAAAIVLAYLDRHLWLGAVFVALPPLNFLVSMVAFTIAVMIYGF* |
Ga0066903_1051211471 | 3300005764 | Tropical Forest Soil | LAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP* |
Ga0066903_1056894891 | 3300005764 | Tropical Forest Soil | PLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGGPPNRPLFHL* |
Ga0066903_1067967882 | 3300005764 | Tropical Forest Soil | LGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0066903_1072087382 | 3300005764 | Tropical Forest Soil | VLAILDKLLWLGTVFVALPSANLLLGMIPLIEFTIGVMIYGAGP* |
Ga0066903_1084708781 | 3300005764 | Tropical Forest Soil | IFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPIILFTIGVMIYGYGP* |
Ga0066652_1019335472 | 3300006046 | Soil | LGLMLLAQELVFAPLAVTAIVLAYLDRHLWLAALFVALPPANLLLGMIMFTIGIMIYGF* |
Ga0075026_1002655061 | 3300006057 | Watersheds | AYLDRHLWLAALFVALPPANLLLGMIMFTIGIMIYGF* |
Ga0079222_112642312 | 3300006755 | Agricultural Soil | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAGP* |
Ga0126384_118214502 | 3300010046 | Tropical Forest Soil | DKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP* |
Ga0126370_103323401 | 3300010358 | Tropical Forest Soil | KLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126376_103452703 | 3300010359 | Tropical Forest Soil | FGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126376_108178381 | 3300010359 | Tropical Forest Soil | QLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF* |
Ga0126376_131082482 | 3300010359 | Tropical Forest Soil | FGPLAVSAIVLAILDKLLWSGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP* |
Ga0126372_102959101 | 3300010360 | Tropical Forest Soil | VLAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126372_114158211 | 3300010360 | Tropical Forest Soil | QVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP* |
Ga0126378_114633332 | 3300010361 | Tropical Forest Soil | GPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP* |
Ga0126379_105951562 | 3300010366 | Tropical Forest Soil | PLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126379_124094652 | 3300010366 | Tropical Forest Soil | AILDKLLWLGAVFVALPSANLLLGMIPMILFTIGVMIYGAAP* |
Ga0126379_124481841 | 3300010366 | Tropical Forest Soil | IFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126379_128818452 | 3300010366 | Tropical Forest Soil | FGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP* |
Ga0126381_1016121512 | 3300010376 | Tropical Forest Soil | LAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANMLLGMLPIILFTIAVIISGRAAP |
Ga0126383_110107473 | 3300010398 | Tropical Forest Soil | LWLGAVFVALPSANLLLGMIPLILFTIAVIFSGRAAP* |
Ga0126383_122446822 | 3300010398 | Tropical Forest Soil | LAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0126369_110118731 | 3300012971 | Tropical Forest Soil | ILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP* |
Ga0182036_105571102 | 3300016270 | Soil | IVLAILDKLLWLGAVFVALPSANLLLGMVPLILFTIGVMIYGAAP |
Ga0182036_117290212 | 3300016270 | Soil | AIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGTAP |
Ga0182041_122575582 | 3300016294 | Soil | WLGVVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0182033_117348221 | 3300016319 | Soil | VLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGNIIYGAGP |
Ga0182033_121148041 | 3300016319 | Soil | ILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP |
Ga0182035_110052872 | 3300016341 | Soil | AQQVIFGPLAVTAIVLAILDKLLWLGAGFVALPSANLLLGMIPLILFTIGVMIYGAGP |
Ga0182034_109890612 | 3300016371 | Soil | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYWAAP |
Ga0182034_114688661 | 3300016371 | Soil | QQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAAP |
Ga0182040_104968221 | 3300016387 | Soil | LAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0182040_106806682 | 3300016387 | Soil | DFALGGLSLLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVAVPSANLLWGMIPLILFTMG |
Ga0182037_100334048 | 3300016404 | Soil | QVIFGPLAVTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0182037_107154122 | 3300016404 | Soil | GPLAVTAIVLAVLDKLLWLGAVFVALPSPNLLLGMIPLILFTIGVIIYGAAP |
Ga0182037_112571181 | 3300016404 | Soil | IFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIAVIILGRAAP |
Ga0182039_101333993 | 3300016422 | Soil | AILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP |
Ga0182039_103183411 | 3300016422 | Soil | LLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP |
Ga0182038_109969521 | 3300016445 | Soil | AIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP |
Ga0187777_101925161 | 3300017974 | Tropical Peatland | QLIFPLLAVAAIVLARLDRHLWLGAIFVALPPTNLILGVIMFTIGIMIYGF |
Ga0187777_107324312 | 3300017974 | Tropical Peatland | SAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGTIPLILFTIGVMIYGAAP |
Ga0210407_105036042 | 3300020579 | Soil | SLLGEELVFAPLAVTAIVLACLDRNLWLAALFVALPPANLLLGMIMFTIGIMIYGF |
Ga0126371_135601402 | 3300021560 | Tropical Forest Soil | FGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIRFTIGVMIYGAAP |
Ga0207664_119623891 | 3300025929 | Agricultural Soil | VTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAGP |
Ga0209465_103000651 | 3300027874 | Tropical Forest Soil | LAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0170818_1020972191 | 3300031474 | Forest Soil | AIVLACLDRNLWLAALFVALPPANLLLGMIMFTIGIMIYGF |
Ga0318534_100185855 | 3300031544 | Soil | SLLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAA |
Ga0318538_104895551 | 3300031546 | Soil | AQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318571_102408662 | 3300031549 | Soil | IVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318528_100342124 | 3300031561 | Soil | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318528_100491063 | 3300031561 | Soil | IVLACLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0318561_103029802 | 3300031679 | Soil | VTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318574_102195372 | 3300031680 | Soil | AIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0306917_105778883 | 3300031719 | Soil | KLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP |
Ga0306917_115177492 | 3300031719 | Soil | LDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0318493_103108921 | 3300031723 | Soil | LLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318502_104039391 | 3300031747 | Soil | LTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318537_100047445 | 3300031763 | Soil | LALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318535_100153921 | 3300031764 | Soil | FGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318509_100593903 | 3300031768 | Soil | TAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318546_101768111 | 3300031771 | Soil | LAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0318498_101178521 | 3300031778 | Soil | LSLLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318498_105457302 | 3300031778 | Soil | QQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318548_101174393 | 3300031793 | Soil | VTAIVLAILDKLLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318548_106750322 | 3300031793 | Soil | VLACLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0318503_102331202 | 3300031794 | Soil | QQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318503_102683892 | 3300031794 | Soil | LLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318568_108340192 | 3300031819 | Soil | RLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0310917_100852171 | 3300031833 | Soil | LSLLAQQVIFGLAAVTAIVLAILDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAPYAKLGAGKIV |
Ga0318517_101564393 | 3300031835 | Soil | VLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0306919_101306494 | 3300031879 | Soil | LAQQVIFGPLAVTTIVLAILDKLLWLGAVFVALPSANLLLGMVPLILFTIGVMIYGAAP |
Ga0306919_101722241 | 3300031879 | Soil | GPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVIIYGAAP |
Ga0306919_101946823 | 3300031879 | Soil | AVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0306919_103444252 | 3300031879 | Soil | VTAIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP |
Ga0318544_100443325 | 3300031880 | Soil | LLWLAAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0306925_100322437 | 3300031890 | Soil | LAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0306925_108623283 | 3300031890 | Soil | AQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP |
Ga0318536_102220562 | 3300031893 | Soil | GPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0306923_100442897 | 3300031910 | Soil | AIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0306921_122605021 | 3300031912 | Soil | AQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0310913_110501602 | 3300031945 | Soil | SLLAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLFLGMIPIILSTIGVMIYGYG |
Ga0310910_102465641 | 3300031946 | Soil | DKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP |
Ga0310910_105790942 | 3300031946 | Soil | LAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP |
Ga0306926_101018137 | 3300031954 | Soil | LDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0306926_126669171 | 3300031954 | Soil | VTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0306922_100560336 | 3300032001 | Soil | SLLAQQVIFGLAAVTAIVLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAA |
Ga0306922_110806631 | 3300032001 | Soil | LAQQVIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0318563_107026081 | 3300032009 | Soil | AVTAIVLAILDKLLWLGAVFVAVPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318507_103687651 | 3300032025 | Soil | LLAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318559_104641842 | 3300032039 | Soil | VTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318545_103621231 | 3300032042 | Soil | SLLAQQVIFGPLAVTAIVLAILDKLLWLGAGFVALPSANLLLGMIPLILFTIGVMIYGAG |
Ga0318558_100447371 | 3300032044 | Soil | LAQQVIFGPLALTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
Ga0318532_102441511 | 3300032051 | Soil | LALLAQQLIFPPLAVAAIVLARLDKRLWLGAIFVALPSANLLLGVIIFTIAIMIYGF |
Ga0318570_104145712 | 3300032054 | Soil | VLAISDKLLWLGAVFVALPSAKLLLGMIPLILFTIGNIIYGAAP |
Ga0318533_103060881 | 3300032059 | Soil | FGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMIPLIEFTIGVMIYGAAP |
Ga0306924_112863542 | 3300032076 | Soil | IVLAILDKLLWLGAVFVALPSANLLLGMIPLILFTIGVMIYGGAP |
Ga0306924_126063831 | 3300032076 | Soil | VIFGPLAVTAIVLAILDKLLWLGAVFVALPSANLLLGMTPLILFTIGVMIYGAAP |
Ga0306920_1009591531 | 3300032261 | Soil | WLGAVFVALPSANLLLGMIPLILFTIGVMIYGAAP |
⦗Top⦘ |