Metagenome / Metatranscriptome Family F090184

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090184
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	51 residues
Representative Sequence	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLER
Number of Associated Samples	95
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	23.15 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	86.11 %
Associated GOLD sequencing projects	91
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (95.370 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (26.852 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.370 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.74% β-sheet: 0.00% Coil/Unstructured: 40.26%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00113	Enolase_C	62.04
PF03952	Enolase_N	25.93
PF01553	Acyltransferase	7.41
PF01256	Carb_kinase	1.85
PF03853	YjeF_N	0.93
PF02769	AIRS_C	0.93
PF05362	Lon_C	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0148	Enolase	Carbohydrate transport and metabolism [G]	87.96
COG0063	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate dehydratase domain	Nucleotide transport and metabolism [F]	1.85
COG0351	Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	Coenzyme transport and metabolism [H]	1.85
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	0.93
COG0466	ATP-dependent Lon protease, bacterial type	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1067	Predicted ATP-dependent protease	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG1750	Predicted archaeal serine protease, S18 family	General function prediction only [R]	0.93
COG3480	Predicted secreted protein YlbL, contains PDZ domain	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.37 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	74.07 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	74.07 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	52.78 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	12.96 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	12.96 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	12.96 %
Unclassified	root	N/A	4.63 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	11.11 %
Unclassified	root	N/A	4.63 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.85 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	52.78 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	11.11 %
Unclassified	root	N/A	4.63 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.85 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10067342	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1153	Open in IMG/M
3300002562\|JGI25382J37095_10070286	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1306	Open in IMG/M
3300002562\|JGI25382J37095_10071915	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1287	Open in IMG/M
3300002909\|JGI25388J43891_1009736	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300002911\|JGI25390J43892_10124440	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300002912\|JGI25386J43895_10017799	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300002916\|JGI25389J43894_1054773	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	674	Open in IMG/M
3300005176\|Ga0066679_10162760	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1404	Open in IMG/M
3300005177\|Ga0066690_10047951	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300005177\|Ga0066690_10906393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M
3300005440\|Ga0070705_101037395	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	667	Open in IMG/M
3300005445\|Ga0070708_101555944	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	616	Open in IMG/M
3300005447\|Ga0066689_10002349	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	7132	Open in IMG/M
3300005467\|Ga0070706_101744443	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005467\|Ga0070706_101744444	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	566	Open in IMG/M
3300005468\|Ga0070707_100734009	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	951	Open in IMG/M
3300005518\|Ga0070699_100124477	All Organisms → cellular organisms → Bacteria	2269	Open in IMG/M
3300005518\|Ga0070699_100413897	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1220	Open in IMG/M
3300005536\|Ga0070697_101064583	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	719	Open in IMG/M
3300005545\|Ga0070695_100469678	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	967	Open in IMG/M
3300005553\|Ga0066695_10403469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	847	Open in IMG/M
3300005556\|Ga0066707_10091667	All Organisms → cellular organisms → Bacteria	1852	Open in IMG/M
3300005560\|Ga0066670_10453526	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	790	Open in IMG/M
3300005560\|Ga0066670_10673155	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	627	Open in IMG/M
3300005561\|Ga0066699_10150009	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1589	Open in IMG/M
3300005569\|Ga0066705_10826747	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	551	Open in IMG/M
3300005575\|Ga0066702_10076946	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300005576\|Ga0066708_10089041	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300006046\|Ga0066652_101581822	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	603	Open in IMG/M
3300006791\|Ga0066653_10666961	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	534	Open in IMG/M
3300006796\|Ga0066665_10472557	Not Available	1031	Open in IMG/M
3300006804\|Ga0079221_10410596	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	843	Open in IMG/M
3300006854\|Ga0075425_100508050	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1387	Open in IMG/M
3300009090\|Ga0099827_10893614	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	769	Open in IMG/M
3300009813\|Ga0105057_1093605	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	548	Open in IMG/M
3300010112\|Ga0127458_1109257	Not Available	908	Open in IMG/M
3300010126\|Ga0127482_1157054	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	568	Open in IMG/M
3300010128\|Ga0127486_1082649	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	788	Open in IMG/M
3300010132\|Ga0127455_1108507	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	586	Open in IMG/M
3300010139\|Ga0127464_1116135	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	500	Open in IMG/M
3300010301\|Ga0134070_10056392	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1328	Open in IMG/M
3300010303\|Ga0134082_10190623	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	837	Open in IMG/M
3300010323\|Ga0134086_10285754	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	637	Open in IMG/M
3300010335\|Ga0134063_10492195	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	613	Open in IMG/M
3300010391\|Ga0136847_10014035	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1332	Open in IMG/M
3300010905\|Ga0138112_1024623	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	539	Open in IMG/M
3300012206\|Ga0137380_10034874	All Organisms → cellular organisms → Bacteria	4642	Open in IMG/M
3300012207\|Ga0137381_10145972	All Organisms → cellular organisms → Bacteria	2033	Open in IMG/M
3300012209\|Ga0137379_10578847	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1030	Open in IMG/M
3300012209\|Ga0137379_11772723	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	512	Open in IMG/M
3300012354\|Ga0137366_10197234	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1505	Open in IMG/M
3300012358\|Ga0137368_10141820	All Organisms → cellular organisms → Bacteria	1787	Open in IMG/M
3300012359\|Ga0137385_10388363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1191	Open in IMG/M
3300012374\|Ga0134039_1038095	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	540	Open in IMG/M
3300012376\|Ga0134032_1186486	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	668	Open in IMG/M
3300012379\|Ga0134058_1115652	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012390\|Ga0134054_1152041	Not Available	523	Open in IMG/M
3300012392\|Ga0134043_1026009	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	715	Open in IMG/M
3300012393\|Ga0134052_1115307	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	569	Open in IMG/M
3300012393\|Ga0134052_1221511	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	548	Open in IMG/M
3300012405\|Ga0134041_1374569	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	528	Open in IMG/M
3300012406\|Ga0134053_1119421	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	533	Open in IMG/M
3300012410\|Ga0134060_1312638	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1384	Open in IMG/M
3300012917\|Ga0137395_11129323	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300012925\|Ga0137419_10128699	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300012972\|Ga0134077_10106881	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1088	Open in IMG/M
3300012976\|Ga0134076_10033661	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300012977\|Ga0134087_10808506	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300014150\|Ga0134081_10187494	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	697	Open in IMG/M
3300014154\|Ga0134075_10120543	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1114	Open in IMG/M
3300015054\|Ga0137420_1416393	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	902	Open in IMG/M
3300015358\|Ga0134089_10020408	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300015358\|Ga0134089_10192649	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	818	Open in IMG/M
3300018431\|Ga0066655_10449523	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	851	Open in IMG/M
3300018431\|Ga0066655_10852960	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	621	Open in IMG/M
3300018431\|Ga0066655_11424399	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	504	Open in IMG/M
3300018433\|Ga0066667_10577202	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	936	Open in IMG/M
3300018468\|Ga0066662_12801518	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	517	Open in IMG/M
3300019868\|Ga0193720_1012492	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1185	Open in IMG/M
3300024330\|Ga0137417_1191684	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	677	Open in IMG/M
3300025322\|Ga0209641_11010935	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	539	Open in IMG/M
3300025324\|Ga0209640_10168818	All Organisms → cellular organisms → Bacteria	1868	Open in IMG/M
3300025326\|Ga0209342_10494828	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1018	Open in IMG/M
3300026300\|Ga0209027_1198641	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	648	Open in IMG/M
3300026308\|Ga0209265_1043511	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1390	Open in IMG/M
3300026310\|Ga0209239_1031477	All Organisms → cellular organisms → Bacteria	2518	Open in IMG/M
3300026313\|Ga0209761_1201699	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	872	Open in IMG/M
3300026316\|Ga0209155_1286621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	511	Open in IMG/M
3300026324\|Ga0209470_1114090	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1203	Open in IMG/M
3300026324\|Ga0209470_1213942	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	802	Open in IMG/M
3300026326\|Ga0209801_1110217	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1185	Open in IMG/M
3300026327\|Ga0209266_1041313	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2348	Open in IMG/M
3300026327\|Ga0209266_1114505	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1155	Open in IMG/M
3300026333\|Ga0209158_1005745	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	6680	Open in IMG/M
3300026334\|Ga0209377_1140145	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	935	Open in IMG/M
3300026524\|Ga0209690_1026975	All Organisms → cellular organisms → Bacteria	2808	Open in IMG/M
3300026524\|Ga0209690_1295567	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300026528\|Ga0209378_1017036	All Organisms → cellular organisms → Bacteria	4155	Open in IMG/M
3300026532\|Ga0209160_1028206	All Organisms → cellular organisms → Bacteria	3588	Open in IMG/M
3300026538\|Ga0209056_10546970	Not Available	590	Open in IMG/M
3300026547\|Ga0209156_10379044	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	598	Open in IMG/M
3300026551\|Ga0209648_10022993	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5448	Open in IMG/M
3300027061\|Ga0209729_1038504	Not Available	601	Open in IMG/M
3300027643\|Ga0209076_1162153	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	623	Open in IMG/M
3300027787\|Ga0209074_10173803	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	792	Open in IMG/M
3300027846\|Ga0209180_10039638	All Organisms → cellular organisms → Bacteria	2569	Open in IMG/M
3300027875\|Ga0209283_10101608	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300031820\|Ga0307473_10299356	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	1011	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.15%
Aquatic	Environmental → Aquatic	0.93%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.15%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.26%
Loam	Environmental → Terrestrial → Soil → Loam	12.96%
Lake	Environmental → Aquatic → Freshwater → Lake	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	41.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	39.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	2.78%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.85%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	26.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	25.00%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	14.81%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.89%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.33%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300002916	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300010112	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010128	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010139	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010905	Grasslands soil microbial communities from Angelo Coastal Reserve, California, USA - 15_R_Wat_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012374	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012376	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012379	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012390	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012393	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012405	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012406	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019868	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s1	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025326	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027061	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100673422	3300002558	Grasslands Soil	MSRLELAGIVAAIVLLALAFQGGEYGTLDWLQLRRQLAEERAAVRAVEVE
JGI25382J37095_100702861	3300002562	Grasslands Soil	VTRAQLAGLAAALVLAALVFQAGEYSTVDWLKLRRQLAEERRTVRDLEVELDSLERLAHALETDPAAQERAA
JGI25382J37095_100719151	3300002562	Grasslands Soil	VTRARLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVR
JGI25388J43891_10097363	3300002909	Grasslands Soil	VTRARLIGIAAAVVLAALAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDSLQRLAHA
JGI25390J43892_101244401	3300002911	Grasslands Soil	VTRTRLIALAAGLVLAXLAFQAGXYSTLDWLTLGRQRVEERRAVRDLEVELDSLQR
JGI25386J43895_100177993	3300002912	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLTLRSQLTEERRAVRELERQLDSLQRLAHALETDPVAQERAAR
JGI25389J43894_10547731	3300002916	Grasslands Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQ
Ga0066679_101627601	3300005176	Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERR
Ga0066690_100479514	3300005177	Soil	VTRARLIGIAAAVVLAALAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDSLQRLAHALET
Ga0066690_109063932	3300005177	Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRL
Ga0070705_1010373951	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLER
Ga0070708_1015559441	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERQAVHDLEERLDSLRR
Ga0066689_100023491	3300005447	Soil	VTRTRLIGLAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRSVRDLEL
Ga0070706_1017444431	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELETDP
Ga0070706_1017444441	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYATLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELETDP
Ga0070707_1007340092	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLAGLAAAALLAGAAFQAGEYSTLDWLKLRGRLARERQAVRELEVELDSLA
Ga0070699_1001244773	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VTRSRLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELEHQLDSLQRLAHALE
Ga0070699_1004138971	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MIVLAWAIVFAGEYSTFDWLKLRQELALERRAVRDLHVALDSLGRLAHDLETSPAAQERAARE
Ga0070697_1010645832	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDS
Ga0070695_1004696781	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERRAVHDLEERLD
Ga0066695_104034691	3300005553	Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELRGRLARERQAVRDLEVQLDSLARRAR
Ga0066707_100916671	3300005556	Soil	VTRSRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIEERRA
Ga0066670_104535262	3300005560	Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELRG
Ga0066670_106731551	3300005560	Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRR
Ga0066699_101500091	3300005561	Soil	VTRTRLIGLAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEERRTVRDLELELDSLQRLAHGLEEDPA
Ga0066705_108267471	3300005569	Soil	VTRPRLAAIAGVVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVR
Ga0066702_100769461	3300005575	Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQE
Ga0066708_100890411	3300005576	Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAV
Ga0066652_1015818221	3300006046	Soil	MTMTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQL
Ga0066653_106669612	3300006791	Soil	VTRAQLAGLAAALVLAALAFQAGEYSTVDWLTLRRQLAEERR
Ga0066665_104725571	3300006796	Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEVELDSLA
Ga0079221_104105962	3300006804	Agricultural Soil	VTRARLIGIAGAVALAGLAFQAGEYGMLDWLKLRRQLAEERRAVRELEVRLDSLERLARALETDPVAQ
Ga0075425_1005080502	3300006854	Populus Rhizosphere	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQ
Ga0099827_108936142	3300009090	Vadose Zone Soil	VTRARIAGIAGAVVLAGLAFQAGEYGTVDWLKLHRQLAQER
Ga0105057_10936051	3300009813	Groundwater Sand	VTRARIAGLVAAVVLAALAFQAGEYGTLDWLTLRRQLTEE
Ga0127458_11092572	3300010112	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAAERRAVR
Ga0127482_11570542	3300010126	Grasslands Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQER
Ga0127486_10826491	3300010128	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLAEERRAV
Ga0127455_11085072	3300010132	Grasslands Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQ
Ga0127464_11161351	3300010139	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGVLDWLTLRSQLAEERRAVRELERQLDS
Ga0134070_100563922	3300010301	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVLELEVELDSL
Ga0134082_101906232	3300010303	Grasslands Soil	VTRARLTGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVRELEVDLDSLAQRGHALETDPVAQERA
Ga0134086_102857542	3300010323	Grasslands Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQLAEERAALRALEVDLDSL
Ga0134063_104921951	3300010335	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVLELEVELDSLAQR
Ga0136847_100140352	3300010391	Freshwater Sediment	VTPARLAGLGGGAVLVLVAILAGEYSTLDWLKLRRQLG
Ga0138112_10246232	3300010905	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVRDLEV
Ga0137380_100348741	3300012206	Vadose Zone Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQLADERAAVR
Ga0137381_101459723	3300012207	Vadose Zone Soil	MSRRELAGIVAVIVLLGLAFQGGEYGTLDWLQLRRQL
Ga0137379_105788471	3300012209	Vadose Zone Soil	VTRPRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIEERRAVRSLEVELDSLARLAR
Ga0137379_117727231	3300012209	Vadose Zone Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEER
Ga0137366_101972342	3300012354	Vadose Zone Soil	VTRARLVGIAAAAVLAALAFQAGEYGTLDWLKLRRQLADERRGVQDLEARLDSLERLARA
Ga0137368_101418201	3300012358	Vadose Zone Soil	VTRAQLAGLIAAVVLAALAFQAGEYSTLDWLTLRRQLAEERQAVSDLEVQLDSLERLARALENDPAAQER
Ga0137385_103883632	3300012359	Vadose Zone Soil	VTRTRLFGIAAALVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDL
Ga0134039_10380951	3300012374	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLIQERRAVR
Ga0134032_11864862	3300012376	Grasslands Soil	MTRARLIGIAAAVVLAGLAFQAGEYGLLDWLTLRNQLAEER
Ga0134058_11156523	3300012379	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRS
Ga0134054_11520411	3300012390	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEER
Ga0134043_10260092	3300012392	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLA
Ga0134052_11153071	3300012393	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0134052_12215111	3300012393	Grasslands Soil	VTRAQLAGLAAALVLAALAFQAGEYSTVDWLTLRRQLAE
Ga0134041_13745691	3300012405	Grasslands Soil	MIGIAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEEHRTVRDLELELDSLQRLARGLEQDP
Ga0134053_11194211	3300012406	Grasslands Soil	VTRARLIGIAAAVVLAGLAFQAGEYGMLDWLTLRSQLAEERRAVRELE
Ga0134060_13126382	3300012410	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLA
Ga0137395_111293231	3300012917	Vadose Zone Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRAVRDLELE
Ga0137419_101286993	3300012925	Vadose Zone Soil	VTRARLIGLAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVR
Ga0134077_101068812	3300012972	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRL
Ga0134076_100336611	3300012976	Grasslands Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0134087_108085062	3300012977	Grasslands Soil	MTRPRIAGIAGSVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVRDLEAALD
Ga0134081_101874942	3300014150	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEVELDSLAQRGHALETDPVAQ
Ga0134075_101205432	3300014154	Grasslands Soil	VTRARLAGLAAAALLAGVAFQAGEYGTLDWLKLRGRLARERQAVRELEVELDSLARRARALETDPVAQ
Ga0137420_14163931	3300015054	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELERQLDSLQRLAHALQRLAHALE
Ga0134089_100204083	3300015358	Grasslands Soil	MTRTRIAGIAGAVVLAGLAFQAGEYGTVDWLKLRRQLADERRAVRALEVELD
Ga0134089_101926492	3300015358	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRRQLAEERRAVRELEVELDSLARLARA
Ga0066655_104495231	3300018431	Grasslands Soil	VTWPRLAGVVAAALLASVAFQAGEYSTLDWLELQGRLARERQAVRDLEVQLDSLARRAEH
Ga0066655_108529602	3300018431	Grasslands Soil	VTRARLIGIAAAVVHAGLAFHAGKSGVLAWLKLPSQLAEEGRVVQEIERTIESL
Ga0066655_114243991	3300018431	Grasslands Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWPTLRRQRVEERRAVRDLEPEP
Ga0066667_105772021	3300018433	Grasslands Soil	VTRPRLAAIAGVVVLAGLAFQAGEYGTVDWLKLRRQ
Ga0066662_128015181	3300018468	Grasslands Soil	MIGIAAGVVLAGLAFQAGEYSTLDWLTLRRQRAEEHRTVRD
Ga0193720_10124921	3300019868	Soil	VTRARLIGLVAAVVLAGLAFQAGEYGTLDWLTLRHQLAEERRAVRD
Ga0137417_11916842	3300024330	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQLAEERRAVRELERQLDSLQRLAHALETDPTAQERAA
Ga0209641_110109351	3300025322	Soil	VTRARIAALVGAVVLAALAFQAGEYGTLDWLTLRRQVAAERQA
Ga0209640_101688181	3300025324	Soil	VSATRLAAVLGSLALLALAAFGGEYGTRDWLQLRRQLAEERRAVRGLEAELDSLARLARALE
Ga0209342_104948281	3300025326	Soil	VTRARIAALVGAVVLAALAFQAGEYGTLDWLTLRRQVAAERQAVRALEIEVHSLAR
Ga0209027_11986411	3300026300	Grasslands Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQRLARELET
Ga0209265_10435112	3300026308	Soil	VTRTRLIALAAGLVLAGLAFQAGEYSTLDWLTLRRQRVEERRAVRDLELELDSLQRLARGLEQD
Ga0209239_10314774	3300026310	Grasslands Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVRDLEAA
Ga0209761_12016992	3300026313	Grasslands Soil	VTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLHRQLAQERQAVRDLEVALDSLDRL
Ga0209155_12866211	3300026316	Soil	VTRARLIGIAAAVVLAGLAFQAGEYGTPDWLKLRNQLAEERRAVRELERQLDSLQRRARA
Ga0209470_11140902	3300026324	Soil	VTRSRLAGIAGAVVLAGLAFQAGEYGTVDWLKLRGQLIQERRAV
Ga0209470_12139421	3300026324	Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQ
Ga0209801_11102171	3300026326	Soil	VTRARLAGLVAAAVLAALAFQAGEYSTLDWLKLRRQLAEERRTVRALEVE
Ga0209266_10413131	3300026327	Soil	MTRPRIAGIAGAVVLAGLAFQAGEYGTVDWLKLQRQLTQERQAVR
Ga0209266_11145052	3300026327	Soil	MTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLTLRSQLAEARRSVRDLERQLDSLQRLA
Ga0209158_10057451	3300026333	Soil	MSRLELAGIVAAIVLLGLAFQGGEYGTLDWLQLRRQ
Ga0209377_11401452	3300026334	Soil	VTRPRLIGIAAAVALAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDS
Ga0209690_10269754	3300026524	Soil	VTRTRLIGLGAGLVLAGLAFQAGEYSTLDWLTLRRQRTEERRAVRDLEVELDS
Ga0209690_12955671	3300026524	Soil	VTRARIVGIIGAAVLVGLAFQAGEYGTLDWLKLRRQLTEERRAVRDLEERLDSLRR
Ga0209378_10170365	3300026528	Soil	VTRARLIGIAAAVVLAGLAFQAGEYGVLDWLTLRSQLAEE
Ga0209160_10282065	3300026532	Soil	VTRARIVGIIGAAVLVGLAFQAGEYGTLDWLKLRRQLTEERRA
Ga0209056_105469701	3300026538	Soil	MSRRELAGIVATIVGLALAFQGGEYGTLDWLQLRRQLAEERAAVRAVEVELDSLGRA
Ga0209156_103790441	3300026547	Soil	VTRARLAGLAAAALLAGVAFQAGEYSTFDWLKLRGRLARERQALLELEV
Ga0209648_100229936	3300026551	Grasslands Soil	VTRARLIAVAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRDLERQLDSLQR
Ga0209729_10385041	3300027061	Forest Soil	VTRPRLIALAAAVTLAGLAFQAGEYSTLDWLTLRRQRAEERRSVRDLELALDSLQRL
Ga0209076_11621532	3300027643	Vadose Zone Soil	VTRARLIAVAAAVVLAGLAFQAGEYGMLDWLKLRSQL
Ga0209074_101738032	3300027787	Agricultural Soil	VTRARLVGLIGAATLVGLAFQAGEYGTLDWLTLRSQLVQERQAVHD
Ga0209180_100396381	3300027846	Vadose Zone Soil	VTRARLIGIAAALALAGLAFAAGEYSTLDWLKLSRQLAEEQQAVRE
Ga0209283_101016083	3300027875	Vadose Zone Soil	VTRPRLIGIAAAVVLAGLAFQAGEYGTLDWLKLRSQLAEERRAVRELERQ
Ga0307473_102993562	3300031820	Hardwood Forest Soil	VTRSRLIAIAAAVVLAGLAFQAGEYGMLDWLKLRSQLAQERRAVRELEHQLDSL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090184

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences