Metagenome / Metatranscriptome Family F090121

Overview

Basic Information

• Family ID: F090121
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 108
• Average Sequence Length: 42 residues
• Representative Sequence: LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRS
• Number of Associated Samples: 93
• Number of Associated Scaffolds: 108

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 69.16 %
• % of genes near scaffold ends (potentially truncated): 84.26 %
• % of genes from short scaffolds (< 2000 bps): 89.81 %
• Associated GOLD sequencing projects: 83
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (87.037 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (16.667 % of family members)
• Environment Ontology (ENVO): Unclassified (27.778 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (44.444 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 23.53%
  β-sheet: 0.00%
  Coil/Unstructured: 76.47%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF01609	DDE_Tnp_1	2.78
PF05598	DUF772	1.85
PF03811	Zn_Tnp_IS1	0.93
PF01844	HNH	0.93
PF03458	Gly_transporter	0.93
PF03400	DDE_Tnp_IS1	0.93
PF13340	DUF4096	0.93
PF01610	DDE_Tnp_ISL3	0.93
PF13546	DDE_5	0.93
PF00044	Gp_dh_N	0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	2.78
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	2.78
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	2.78
COG5421	Transposase	Mobilome: prophages, transposons [X]	2.78
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	2.78
COG3293	Transposase	Mobilome: prophages, transposons [X]	2.78
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.93
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	0.93
COG0057	Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase	Carbohydrate transport and metabolism [G]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.96 %
Unclassified	root	N/A	12.04 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.96 %
Unclassified	root	N/A	12.04 %

Level 3

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.04 %
Unclassified	root	N/A	12.04 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	64.81 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %
Nitrospinae/Tectomicrobia group	clade	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.85 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Unclassified	root	N/A	12.04 %
unclassified Archaea	no rank	All Organisms → cellular organisms → Archaea → unclassified Archaea	0.93 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	63.89 %
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Tectomicrobia	phylum	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	1.85 %
Unclassified	root	N/A	12.04 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.93 %

Level 6

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.85 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Unclassified	root	N/A	12.04 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.93 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.93 %

Level 7

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Halieaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae	0.93 %
Oscillatoriophycideae	subclass	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Level 8

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Haliea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea	0.93 %
Oscillatoriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Level 9

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Cyanothecaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
unclassified Haliea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Level 10

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Cyanothece	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece	0.93 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Level 11

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
unclassified Cyanothece	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece	0.93 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Level 12

Name	Rank	Taxonomy	Distribution
archaeon 13_1_20CM_2_51_12	species	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon 13_1_20CM_2_51_12	0.93 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	63.89 %
Candidatus Entotheonella	genus	All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella	0.93 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %
Cyanothece sp. PCC 7425	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Oscillatoriophycideae → Oscillatoriales → Cyanothecaceae → Cyanothece → unclassified Cyanothece → Cyanothece sp. PCC 7425	0.93 %
Haliea sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Halieaceae → Haliea → unclassified Haliea → Haliea sp.	0.93 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.93 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.93 %
Unclassified	root	N/A	12.04 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.93 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886007|SwRhRL2b_contig_2059622	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	930
3300000550|F24TB_10094406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	619
3300000559|F14TC_100068721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1426
3300000559|F14TC_102109357	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	512
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1004276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1651
3300000596|KanNP_Total_noBrdU_T14TCDRAFT_1007935	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1187
3300000709|KanNP_Total_F14TBDRAFT_1001056	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1698
3300000709|KanNP_Total_F14TBDRAFT_1004760	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	927
3300000754|JGI11851J11668_1000290	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1653
3300000858|JGI10213J12805_10124413	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1434

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	75.93%
Host-Associated	Host-Associated	24.07%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	2.78%
Plants	Host-Associated → Plants	24.07%
Terrestrial	Environmental → Terrestrial	73.15%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	2.78%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.67%
Soil	Environmental → Terrestrial → Soil	73.15%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.63%
Loam	Environmental → Terrestrial → Soil → Loam	17.59%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.93%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	13.89%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.89%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	9.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.63%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.93%

Habitat

Habitat	Taxonomy	Distribution
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.19%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886007	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL2b_0118.00005720	2162886007	Switchgrass Rhizosphere	VHTLWSIRKNSGFSTQEEHLGLLGVEALTNALNLRYATRSIY
F24TB_100944062	3300000550	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYATR
F14TC_1000687211	3300000559	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYAT
F14TC_1021093571	3300000559	Soil	VHTLWYSRKNSGFSTQEEHLVLLGLEALTNALNLRYATRS
KanNP_Total_noBrdU_T14TCDRAFT_10042762	3300000596	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRSIY
KanNP_Total_noBrdU_T14TCDRAFT_10079351	3300000596	Soil	LHTSGHTRKSSSFSTQDEHLVLLGLEALTNVPNLRYATRSI
KanNP_Total_F14TBDRAFT_10010563	3300000709	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRS
KanNP_Total_F14TBDRAFT_10047601	3300000709	Soil	VHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSN
JGI11851J11668_10002902	3300000754	Soil	VHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSI
JGI10213J12805_101244131	3300000858	Soil	MGLHTSRHTRKNSSFSTQGKRIGLLGLEALPYAAHLHYATRS
JGI11615J12901_100847782	3300000953	Soil	MGLHTSRHTRKTSSFSTQDEPLVLLGLEALTGVSNLHYATRSN*
JGI12053J15887_101532822	3300001661	Forest Soil	LHTPRHTRKNSSFSTQDEHLGLLGLEALTETPNLHYATRS
JGI25385J37094_100930581	3300002558	Grasslands Soil	LHTSRHTRKNSGFSTQDEPLGLLGLEALTEAPNFHYATRS
JGI25384J37096_100917322	3300002561	Grasslands Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRS
C688J35102_1204900421	3300002568	Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRS
JGI25613J43889_100263151	3300002907	Grasslands Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSX
JGI25382J43887_103008642	3300002908	Grasslands Soil	LHTSRHTRKNSXFSTQXEPLGLLGLEALTEAPNFHYATRSXXSV
JGI25406J46586_101160331	3300003203	Tabebuia Heterophylla Rhizosphere	MGLHTSRHTRKNSSFSTQDEHLVLLGLEALTAAPNLRYATRSIY
JGI25404J52841_101296481	3300003659	Tabebuia Heterophylla Rhizosphere	VHTSGHTRKNSSFSTQDEHQVLLGLEALTDVPNLRYATRSN
Ga0058689_101552522	3300004016	Agave	MGLHASRHTRKNSSFSTQVERLVLLGLEALTGVSNLHYVDTL*
Ga0063454_1004980921	3300004081	Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSTYVYELYQLHQI*
Ga0063356_1012065651	3300004463	Arabidopsis Thaliana Rhizosphere	LHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPNRRYATRS
Ga0066676_110052481	3300005186	Soil	MGLHTSRHTRKNSSFSTQDKRIVLLGLEALPYASHLHYATCS
Ga0065704_101102641	3300005289	Switchgrass Rhizosphere	VHTLWSIRKNSGFSTQEEHLGLLGVEALTNALNLRYATRSN*
Ga0065705_100096457	3300005294	Switchgrass Rhizosphere	RHIRKNSSFSTQDEHIVLLGLEALTETPNLRYATRPNYY*
Ga0065705_101656322	3300005294	Switchgrass Rhizosphere	VHTPRHIRKNSGFSTQDEHIGLLGLEALTETLYLRYATCS
Ga0065707_101228123	3300005295	Switchgrass Rhizosphere	VHTPRHIRENSGFSTQDEHSVLLGLEALTETLNLRYATRSTYRFHGT
Ga0066388_1039047592	3300005332	Tropical Forest Soil	AIRVHTPRHIRKNSGFSTQEEHIVLLGLEALTGTPNLRYATRSI*
Ga0066686_103857392	3300005446	Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSTYRQRFFRSLQNGL
Ga0070706_1007359524	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	LHTSRHTKKNSSFSTQDEHLVLLGLEALTGVSNLHYATRSIYGGTLAEFQTC
Ga0066707_103780111	3300005556	Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYATRSS*
Ga0066700_109014892	3300005559	Soil	HTSRHTRKNSDFSTQDEHLVLLGLEALPAALNLHYATRSK*
Ga0066699_104521702	3300005561	Soil	IGLHTSRHTRKNSSFSTQDEHRVLLGSEALTDAPNLRYATRST*
Ga0066905_1017326592	3300005713	Tropical Forest Soil	MASHTSRHTGKNSGFSTQDEHLVLLGLEALTDTSNFRSATRSN*
Ga0068861_1001752971	3300005719	Switchgrass Rhizosphere	VHTPRHIRENSGFSTQDEHSVLLGLEALTETLNLRYATRS
Ga0066903_1006534221	3300005764	Tropical Forest Soil	VHTSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRS
Ga0066903_1025188193	3300005764	Tropical Forest Soil	HTSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRST*
Ga0066903_1035408143	3300005764	Tropical Forest Soil	TSGHTRKHSSFSTQDEHLVLLGLEALIDVPNLRYATRSI*
Ga0066903_1063397891	3300005764	Tropical Forest Soil	MGSHTSRHTGKNSEFSTQDEHLVLLGLEALTDISNFRSATRSI*
Ga0081455_101453992	3300005937	Tabebuia Heterophylla Rhizosphere	MHTPRHIRKNSGFSTQDEHIVLLGLEALTETPNLRYATRSI*
Ga0066659_112771461	3300006797	Soil	MGSHTSRHTGKNSGFSTQDEHLVLLGLEALTDTSNFRSATRS
Ga0075421_1003175362	3300006845	Populus Rhizosphere	LHTSVHTRKNSSFSTQDEHLVLLGLEALTNVPNLRYATRSS*
Ga0075421_1013797602	3300006845	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEPLVLLGLEALTEASNLRYATRST*
Ga0075421_1023182211	3300006845	Populus Rhizosphere	VHTPRHIRKNSSFSTQDEHIVLLGLEALTETPNLRYATRS
Ga0075431_1010570182	3300006847	Populus Rhizosphere	GEMGSHTSRHTGKNSGFSTQDEHLMLLGLEALTDTS*
Ga0075420_1001990501	3300006853	Populus Rhizosphere	MGLHTSSHTRKNSSFSTQDEHLLLLGLEALTGVSNLHYATRSI*
Ga0075425_1004346212	3300006854	Populus Rhizosphere	VHTPRHIRKNSGFSTQEEHIVLLGLEALTETPNLRYATRSK
Ga0075425_1011591661	3300006854	Populus Rhizosphere	NSGFSTQEEHLGLLGLEALTNALNLRYATRSKYYNAPLKG*
Ga0075434_1020345391	3300006871	Populus Rhizosphere	VHTLWYIRKNSGFSTQEEHLGLLGLEALTNALNLRYATRSKYYNAPLKG*
Ga0075429_1001812691	3300006880	Populus Rhizosphere	MGSHTSRHTGKNSGFSTQDEHLMLLGLEALTDTSNFRSATRSS
Ga0075419_100591922	3300006969	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEPLVLLGLEALTEASNLRYATRSIYTRRRNLLENVDI*
Ga0099793_100488571	3300007258	Vadose Zone Soil	GEIGLHTSRHTRKNSSFSTQDKHLVLLGLEALTDAPNLRYATRSN*
Ga0099827_103856332	3300009090	Vadose Zone Soil	LHTSRDTRKNSVFSTQDEHLGLLGLEALTEALNFHYAKRSIYVVLFSCYLDS*
Ga0099827_109950391	3300009090	Vadose Zone Soil	RKNSVFSTQDEHLGLLGLEALTEALNFHYAKRSTY*
Ga0075418_112202611	3300009100	Populus Rhizosphere	TRKNSSFSTQGEHQVLLGLEALADGPNLRYATCSKYLGVS*
Ga0114129_101442783	3300009147	Populus Rhizosphere	MHSSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRST*
Ga0105249_103197881	3300009553	Switchgrass Rhizosphere	VHTPRHIRKNSGFSTQDEHIGLLGLEALTETLYLRYATCSN
Ga0126379_130978952	3300010366	Tropical Forest Soil	MASHTSRHTGKNSGFSTQDEHVVLLGWEALTEALYLRYATCSN
Ga0137391_102658361	3300011270	Vadose Zone Soil	GEIGLHTSRHTRKNSSFSTQDEHLVLLGLEALTEAPNPHYAVVSL*
Ga0137363_112622051	3300012202	Vadose Zone Soil	RHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSI*
Ga0137362_108801511	3300012205	Vadose Zone Soil	TRKNSSFSTQDEHPVLLGLEALTAVPNLRYATRSIYEMDI*
Ga0137381_102553121	3300012207	Vadose Zone Soil	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSNY
Ga0137372_102558461	3300012350	Vadose Zone Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRS
Ga0137367_101434903	3300012353	Vadose Zone Soil	HTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRST*
Ga0137384_106439712	3300012357	Vadose Zone Soil	MSLHTSRHTRKNSSFSTQDEHLVLLGLEALTGVSNLHYA
Ga0137390_104138773	3300012363	Vadose Zone Soil	CGAIGLPTSRDTRKNSVFSTQDEHLGLLGLEALTEALNFHYATRSN*
Ga0150984_1082000013	3300012469	Avena Fatua Rhizosphere	MHTSRHSRKNSSFSTQGEHLVLLGLEALTEASNLRYATRSI*
Ga0137373_109953461	3300012532	Vadose Zone Soil	SKNSSFSTQDEHLMLLGLEALTDAPNLRYATRST*
Ga0137404_104414371	3300012929	Vadose Zone Soil	GLHTSRHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSK*
Ga0137405_10294551	3300015053	Vadose Zone Soil	LHTSRHTRKNSGFSTQDEHLVLLGLEALTEVPNLRYATRSTYYGLRTRS
Ga0182039_122689682	3300016422	Soil	MASHTSRHTGKNSGFATQDEHLVLLGLEALTDTSNFCPATRSIYPTP
Ga0184645_11628131	3300019233	Groundwater Sediment	TSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSK
Ga0184646_14212363	3300019259	Groundwater Sediment	LHTSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSK
Ga0210378_102211792	3300021073	Groundwater Sediment	LHTSRHIRKNSSFSTQDEHLVLLGLEALIDTPNLRYATRSIYPL
Ga0207684_100604545	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MCFHILRHSRKNSDFSTQDEHLVLLGLASLTEAPHLRYATRSH
Ga0209761_10887543	3300026313	Grasslands Soil	LHTSRHTRKNSDFSTQDEHLVLLGLEALTETPNLRYAT
Ga0209131_10860861	3300026320	Grasslands Soil	LHTSRHTSKNSSFSTQDEHLMLLGLEALTDAPNLRYATRSSYIGVNK
Ga0209806_11940671	3300026529	Soil	MGLHTSRHTRKNSSFSTQDEHLVLLGLKALTDAPNLSYATRSRYTLVM
Ga0209180_101627002	3300027846	Vadose Zone Soil	GLHTSRHTSKNSRFSTQDEHLVLLGLEALTAAANLRYATRSSYLRQVER
Ga0209814_100515121	3300027873	Populus Rhizosphere	MHTSGHTRKNSSFSTQGEHQVLLGLEALADGPNLRYATCS
Ga0209481_100652472	3300027880	Populus Rhizosphere	MGLHTSRHTRKNSSFSTQDKHIVLLGLEALPYASHLHYATCSNYHK
Ga0209590_103005091	3300027882	Vadose Zone Soil	TRKNSSFSTQDEHLVLLGLEALTEAPNPHYATRSI
Ga0209590_106622692	3300027882	Vadose Zone Soil	MGLHTSRHTRKNSSFSTQDKHLVLLGLEALTDAPNSRYATRSIY
Ga0207428_101543862	3300027907	Populus Rhizosphere	MGLHTSSHTRKNSSFSTQDEHLLLLGLEALTGVSNLHYATRSR
Ga0209382_100900354	3300027909	Populus Rhizosphere	MHTSGHTRKNSSFSTQGEHQVLLGLEALADGPNLRYATCSTYEVALR
Ga0137415_100936271	3300028536	Vadose Zone Soil	SLHTSKHIRKDSGFSTQDEHRVLLGLEALTKAPNRRYATRST
Ga0247819_100810672	3300028608	Soil	LHTSVHTRKNSSFSTQDEHLVLLGVEALTNVPNLRYATRSTYHTP
Ga0307284_100669923	3300028799	Soil	LHTPRHTRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRSTYQERD
Ga0247826_112479231	3300030336	Soil	LHTSVHTRKNSSFSTQDEHLVLLGVEALTNVPNLRYATRSK
Ga0308199_10891551	3300031094	Soil	HTSRHTRKNSSFSTQDEHPVLLGLEALTAVPNLRYATRSIYL
Ga0308194_102047891	3300031421	Soil	TRKNSGFSTQDEHRVLLGSEALTDAPNLRYATRSN
Ga0308194_102122611	3300031421	Soil	TRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRST
Ga0308194_103018151	3300031421	Soil	HTRKNSSFSTQDEHLVLLGLEALTEAPNLYYATRSIYERQV
Ga0318494_108829381	3300031751	Soil	GVHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSN
Ga0318521_104612112	3300031770	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYATCSI
Ga0318543_102186901	3300031777	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRY
Ga0318550_100573592	3300031797	Soil	VHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSNYS
Ga0306921_103562691	3300031912	Soil	VHTLRHSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSR
Ga0310916_105709431	3300031942	Soil	SLHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPKRRYATRSK
Ga0310913_104540361	3300031945	Soil	VHTLRHSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSIYPKMLI
Ga0310911_107804801	3300032035	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYAT
Ga0318506_100766671	3300032052	Soil	LHTSRHIRKDSGFSTQDEHRVLLGLEALTKAPKRRYATRSNYAEARTSSS
Ga0318505_100551712	3300032060	Soil	VHTSGYTRKDSSFSTQDEHQVLLGLEALTDVPKLRYATRSTYRFHGTGRVCNSLM
Ga0318505_102493911	3300032060	Soil	VHTPRHIRKNSGFSTQGEHIVLLGLEALTETPDLRYATCSK
Ga0306924_116019131	3300032076	Soil	HSRKNSGFSTQDEHVVLLGWEALTEALYLRYATCSM
Ga0307470_109128952	3300032174	Hardwood Forest Soil	VHTPRHIRKNSGFSTQDEHIVLLGLEALTETPNLRY
Ga0310914_101577841	3300033289	Soil	GLHTSGHTRKHSSFSTQDEHLVLLGLEALTAVPNLRYATRSS
Ga0370548_037832_2_124	3300034644	Soil	RQRAYTRENSGFSTQDEHLGLLGLEALTEALNFHYATRST