Metagenome / Metatranscriptome Family F090046

Basic Information
Family ID	F090046
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	94 residues
Representative Sequence	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Number of Associated Samples	92
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Archaea
% of genes with valid RBS motifs	7.41 %
% of genes near scaffold ends (potentially truncated)	23.15 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Archaea (97.222 % of family members)
NCBI Taxonomy ID	2157
Taxonomy	All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (36.111 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.111 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 31.31% β-sheet: 10.10% Coil/Unstructured: 58.59%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00072	Response_reg	15.74
PF01467	CTP_transf_like	3.70
PF03104	DNA_pol_B_exo1	2.78
PF00382	TFIIB	2.78
PF09334	tRNA-synt_1g	2.78
PF00136	DNA_pol_B	2.78
PF01061	ABC2_membrane	1.85
PF17170	DUF5128	1.85
PF07991	IlvN	0.93
PF13412	HTH_24	0.93
PF01545	Cation_efflux	0.93
PF08264	Anticodon_1	0.93
PF00230	MIP	0.93
PF05050	Methyltransf_21	0.93
PF08271	TF_Zn_Ribbon	0.93
PF07690	MFS_1	0.93
PF05726	Pirin_C	0.93
PF12850	Metallophos_2	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0417	DNA polymerase B elongation subunit	Replication, recombination and repair [L]	5.56
COG0018	Arginyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0060	Isoleucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0143	Methionyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0215	Cysteinyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0495	Leucyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0525	Valyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.78
COG0059	Ketol-acid reductoisomerase	Amino acid transport and metabolism [E]	1.85
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.93
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.93
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.93
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.93
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	0.93
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	97.22 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
TACK group	clade	All Organisms → cellular organisms → Archaea → TACK group	12.96 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Thaumarchaeota	phylum	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	12.96 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Nitrososphaeria	class	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria	8.33 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Nitrososphaerales	order	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales	8.33 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Nitrososphaeraceae	family	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	8.33 %
Unclassified	root	N/A	1.85 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Nitrosocosmicus	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1.85 %
Unclassified	root	N/A	1.85 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	1.85 %
Candidatus Nitrosocosmicus oleophilus	species	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	0.93 %
Nitrososphaera	genus	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	0.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8850107	All Organisms → cellular organisms → Archaea	1304	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0901897	All Organisms → cellular organisms → Archaea	4396	Open in IMG/M
3300000041\|ARcpr5oldR_c000532	Not Available	4773	Open in IMG/M
3300000042\|ARSoilYngRDRAFT_c00326	All Organisms → cellular organisms → Bacteria	6841	Open in IMG/M
3300000043\|ARcpr5yngRDRAFT_c008048	All Organisms → cellular organisms → Archaea	917	Open in IMG/M
3300000550\|F24TB_10494576	All Organisms → cellular organisms → Archaea	1444	Open in IMG/M
3300000559\|F14TC_100414514	Not Available	691	Open in IMG/M
3300000596\|KanNP_Total_noBrdU_T14TCDRAFT_1000597	All Organisms → cellular organisms → Archaea	4130	Open in IMG/M
3300001904\|JGI24736J21556_1028264	All Organisms → cellular organisms → Archaea	868	Open in IMG/M
3300002099\|JGI24808J26613_1014150	All Organisms → cellular organisms → Archaea	1416	Open in IMG/M
3300002899\|JGIcombinedJ43975_10038983	All Organisms → cellular organisms → Archaea	786	Open in IMG/M
3300004479\|Ga0062595_101337445	All Organisms → cellular organisms → Archaea	648	Open in IMG/M
3300005105\|Ga0066812_1009679	All Organisms → cellular organisms → Archaea	667	Open in IMG/M
3300005169\|Ga0066810_10004277	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1801	Open in IMG/M
3300005169\|Ga0066810_10069050	All Organisms → cellular organisms → Archaea	728	Open in IMG/M
3300005185\|Ga0066811_1007223	All Organisms → cellular organisms → Archaea	750	Open in IMG/M
3300005186\|Ga0066676_10012970	All Organisms → cellular organisms → Archaea	4166	Open in IMG/M
3300005276\|Ga0065717_1004907	All Organisms → cellular organisms → Archaea	959	Open in IMG/M
3300005277\|Ga0065716_1000266	All Organisms → cellular organisms → Archaea	2121	Open in IMG/M
3300005289\|Ga0065704_10001115	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	12020	Open in IMG/M
3300005289\|Ga0065704_10031349	All Organisms → cellular organisms → Archaea	1196	Open in IMG/M
3300005293\|Ga0065715_10089343	All Organisms → cellular organisms → Archaea	11045	Open in IMG/M
3300005294\|Ga0065705_10311075	All Organisms → cellular organisms → Archaea	1027	Open in IMG/M
3300005294\|Ga0065705_10691435	All Organisms → cellular organisms → Archaea	626	Open in IMG/M
3300005295\|Ga0065707_10030459	All Organisms → cellular organisms → Archaea	1507	Open in IMG/M
3300005539\|Ga0068853_100153150	All Organisms → cellular organisms → Archaea	2076	Open in IMG/M
3300005614\|Ga0068856_100551485	All Organisms → cellular organisms → Archaea	1174	Open in IMG/M
3300005617\|Ga0068859_101063260	All Organisms → cellular organisms → Archaea	890	Open in IMG/M
3300005719\|Ga0068861_100694669	All Organisms → cellular organisms → Archaea	945	Open in IMG/M
3300005937\|Ga0081455_10006549	All Organisms → cellular organisms → Archaea	12461	Open in IMG/M
3300006049\|Ga0075417_10421085	All Organisms → cellular organisms → Archaea	663	Open in IMG/M
3300006058\|Ga0075432_10010956	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera	3080	Open in IMG/M
3300006058\|Ga0075432_10423784	All Organisms → cellular organisms → Archaea	579	Open in IMG/M
3300006844\|Ga0075428_100095237	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	3245	Open in IMG/M
3300006847\|Ga0075431_101234119	All Organisms → cellular organisms → Archaea	710	Open in IMG/M
3300006852\|Ga0075433_10130110	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	2236	Open in IMG/M
3300006871\|Ga0075434_100565528	All Organisms → cellular organisms → Archaea	1156	Open in IMG/M
3300006880\|Ga0075429_100117469	All Organisms → cellular organisms → Archaea	2325	Open in IMG/M
3300006881\|Ga0068865_100219420	All Organisms → cellular organisms → Archaea	1486	Open in IMG/M
3300006969\|Ga0075419_10390026	All Organisms → cellular organisms → Archaea	953	Open in IMG/M
3300007076\|Ga0075435_100192303	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota	1727	Open in IMG/M
3300007076\|Ga0075435_101887020	All Organisms → cellular organisms → Archaea	524	Open in IMG/M
3300009012\|Ga0066710_100088732	All Organisms → cellular organisms → Archaea	4077	Open in IMG/M
3300009094\|Ga0111539_10010690	All Organisms → cellular organisms → Archaea	11558	Open in IMG/M
3300009098\|Ga0105245_10512214	All Organisms → cellular organisms → Archaea	1217	Open in IMG/M
3300009147\|Ga0114129_11078710	All Organisms → cellular organisms → Archaea	1007	Open in IMG/M
3300009147\|Ga0114129_11613930	All Organisms → cellular organisms → Archaea	794	Open in IMG/M
3300009156\|Ga0111538_11279319	All Organisms → cellular organisms → Archaea	926	Open in IMG/M
3300009162\|Ga0075423_10446769	All Organisms → cellular organisms → Archaea	1358	Open in IMG/M
3300009162\|Ga0075423_12718674	All Organisms → cellular organisms → Archaea	542	Open in IMG/M
3300009174\|Ga0105241_11822991	All Organisms → cellular organisms → Archaea	594	Open in IMG/M
3300009800\|Ga0105069_1001084	All Organisms → cellular organisms → Archaea	1631	Open in IMG/M
3300009804\|Ga0105063_1016770	All Organisms → cellular organisms → Archaea	837	Open in IMG/M
3300010047\|Ga0126382_11201121	All Organisms → cellular organisms → Archaea	679	Open in IMG/M
3300010358\|Ga0126370_10500049	All Organisms → cellular organisms → Archaea	1027	Open in IMG/M
3300010362\|Ga0126377_10034101	All Organisms → cellular organisms → Archaea	4331	Open in IMG/M
3300012475\|Ga0157317_1001263	All Organisms → cellular organisms → Archaea	1333	Open in IMG/M
3300012496\|Ga0157353_1000167	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	3079	Open in IMG/M
3300012501\|Ga0157351_1000141	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	3366	Open in IMG/M
3300012505\|Ga0157339_1004610	All Organisms → cellular organisms → Archaea	1052	Open in IMG/M
3300012508\|Ga0157315_1019927	All Organisms → cellular organisms → Archaea	699	Open in IMG/M
3300012515\|Ga0157338_1003438	All Organisms → cellular organisms → Archaea	1312	Open in IMG/M
3300012951\|Ga0164300_10662238	All Organisms → cellular organisms → Archaea	626	Open in IMG/M
3300012955\|Ga0164298_10254780	All Organisms → cellular organisms → Archaea	1061	Open in IMG/M
3300013308\|Ga0157375_10119286	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2745	Open in IMG/M
3300015371\|Ga0132258_12205465	All Organisms → cellular organisms → Archaea	1383	Open in IMG/M
3300015371\|Ga0132258_12701240	All Organisms → cellular organisms → Archaea	1239	Open in IMG/M
3300015371\|Ga0132258_12790511	All Organisms → cellular organisms → Archaea	1217	Open in IMG/M
3300015371\|Ga0132258_13614010	All Organisms → cellular organisms → Archaea	1057	Open in IMG/M
3300015373\|Ga0132257_100314738	All Organisms → cellular organisms → Archaea	1884	Open in IMG/M
3300015374\|Ga0132255_102986258	All Organisms → cellular organisms → Archaea	722	Open in IMG/M
3300015374\|Ga0132255_105793333	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300017792\|Ga0163161_10681739	All Organisms → cellular organisms → Archaea	854	Open in IMG/M
3300017997\|Ga0184610_1096183	All Organisms → cellular organisms → Archaea	934	Open in IMG/M
3300018028\|Ga0184608_10006186	All Organisms → cellular organisms → Archaea	3900	Open in IMG/M
3300018028\|Ga0184608_10386295	All Organisms → cellular organisms → Archaea	610	Open in IMG/M
3300018051\|Ga0184620_10005461	All Organisms → cellular organisms → Archaea	2659	Open in IMG/M
3300018072\|Ga0184635_10005376	All Organisms → cellular organisms → Archaea	4149	Open in IMG/M
3300018075\|Ga0184632_10007599	All Organisms → cellular organisms → Archaea	4516	Open in IMG/M
3300018081\|Ga0184625_10650066	All Organisms → cellular organisms → Archaea	511	Open in IMG/M
3300022195\|Ga0222625_1159790	All Organisms → cellular organisms → Archaea	523	Open in IMG/M
3300022756\|Ga0222622_10662664	All Organisms → cellular organisms → Archaea	756	Open in IMG/M
3300025315\|Ga0207697_10003554	All Organisms → cellular organisms → Archaea	7677	Open in IMG/M
3300025728\|Ga0207655_1234693	All Organisms → cellular organisms → Archaea	527	Open in IMG/M
3300025899\|Ga0207642_10072055	All Organisms → cellular organisms → Archaea	1648	Open in IMG/M
3300025938\|Ga0207704_10043782	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	2646	Open in IMG/M
3300025949\|Ga0207667_12230613	All Organisms → cellular organisms → Archaea	504	Open in IMG/M
3300025961\|Ga0207712_10189160	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus	1624	Open in IMG/M
3300025972\|Ga0207668_12033598	All Organisms → cellular organisms → Archaea	517	Open in IMG/M
3300026324\|Ga0209470_1024940	All Organisms → cellular organisms → Archaea	3157	Open in IMG/M
3300026324\|Ga0209470_1094376	All Organisms → cellular organisms → Archaea	1351	Open in IMG/M
3300027013\|Ga0209884_1004302	All Organisms → cellular organisms → Archaea	1249	Open in IMG/M
3300027523\|Ga0208890_1010963	All Organisms → cellular organisms → Archaea	1201	Open in IMG/M
3300027560\|Ga0207981_1005258	All Organisms → cellular organisms → Archaea	2293	Open in IMG/M
3300027873\|Ga0209814_10023634	All Organisms → cellular organisms → Archaea	2506	Open in IMG/M
3300027873\|Ga0209814_10059253	All Organisms → cellular organisms → Archaea	1603	Open in IMG/M
3300027880\|Ga0209481_10551036	All Organisms → cellular organisms → Archaea	597	Open in IMG/M
3300027907\|Ga0207428_10000672	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	39963	Open in IMG/M
3300027907\|Ga0207428_10009021	All Organisms → cellular organisms → Archaea	8978	Open in IMG/M
3300027907\|Ga0207428_10042312	All Organisms → cellular organisms → Archaea	3683	Open in IMG/M
3300027909\|Ga0209382_11644405	All Organisms → cellular organisms → Archaea	633	Open in IMG/M
3300028791\|Ga0307290_10100257	All Organisms → cellular organisms → Archaea	1056	Open in IMG/M
3300028814\|Ga0307302_10311860	All Organisms → cellular organisms → Archaea	774	Open in IMG/M
3300031716\|Ga0310813_10185730	All Organisms → cellular organisms → Archaea	1696	Open in IMG/M
3300031720\|Ga0307469_10095340	All Organisms → cellular organisms → Archaea	2070	Open in IMG/M
3300031740\|Ga0307468_100054039	All Organisms → cellular organisms → Archaea	2120	Open in IMG/M
3300032003\|Ga0310897_10000269	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae	11313	Open in IMG/M
3300033412\|Ga0310810_10044065	All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Candidatus Nitrosocosmicus → Candidatus Nitrosocosmicus oleophilus	5445	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.48%
Environmental	Environmental	43.52%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.48%
Terrestrial	Environmental → Terrestrial	35.19%
Aquatic	Environmental → Aquatic	8.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	35.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	27.78%
Sediment	Environmental → Aquatic → Sediment	7.41%
Freshwater	Environmental → Aquatic → Freshwater	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	26.85%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	12.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.41%
Loam	Environmental → Terrestrial → Soil → Loam	2.78%
Sand	Environmental → Terrestrial → Soil → Sand	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	26.85%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.37%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.81%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	12.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.41%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.56%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.78%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.78%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	22.22%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	10.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.41%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.70%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.78%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000042	Arabidopsis rhizosphere soil microbial communities from the University of North Carolina - sample from Arabidopsis soil young	Host-Associated	Open in IMG/M
3300000043	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000596	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA no BrdU F1.4TC	Environmental	Open in IMG/M
3300001904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2	Host-Associated	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300002899	Soil microbial communities from Manhattan, Kansas, USA - Combined assembly of Kansas soil 100-500um Nextera (ASSEMBLY_DATE=20140607)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005185	Soil and rhizosphere microbial communities from Laval, Canada - mgHPB	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005276	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Mutant cpr5	Host-Associated	Open in IMG/M
3300005277	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample Wild type Col-0	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009804	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012475	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.old.080610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012505	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012515	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.7.yng.070610	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025728	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027013	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027523	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_00022420	2088090015	Soil	MTKYVDMKCAICGYEWKISEKRCGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRALIIVSDEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
ICChiseqgaiiDRAFT_09018975	3300000033	Soil	MTKYVDMKCAICGYEWKISEKRCGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRALIIVSDEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
ARcpr5oldR_0005325	3300000041	Arabidopsis Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
ARSoilYngRDRAFT_003267	3300000042	Arabidopsis Rhizosphere	TKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
ARcpr5yngRDRAFT_0080481	3300000043	Arabidopsis Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKKXXXSFLKDREAIIVSESEMXRLYDEYYNQLANVSKYLKERYGNKSTAS*
F24TB_104945761	3300000550	Soil	MTEYVDMKCAICGYEWKISEKRYGLYSYKICENCALIGPNEPTHFKVSKRKPVPSFLKERASIIASEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
F14TC_1004145142	3300000559	Soil	WKISEKRYGLYSYKICENCALIGPNEPTHFKVSKRKPVPSFLKERASIIASEEEMHRLYDEYYNQLANVSRYLKQKYGTKSNAI*
KanNP_Total_noBrdU_T14TCDRAFT_10005971	3300000596	Soil	MTEYVDMKCAICGYEWKISEKRYGLYSYKICENCALIGPNEPTHFKVSKRKPVPSFLKERASIIASEEEMHRLYDEYYNQLANVSRYLKQKYGTKSNAI*
JGI24736J21556_10282641	3300001904	Corn Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
JGI24808J26613_10141502	3300002099	Soil	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVYLKEKYGTKSNAI*
JGIcombinedJ43975_100389832	3300002899	Soil	MKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVYLKEKYGTKSNAI*
Ga0062595_1013374451	3300004479	Soil	MTEYVHMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0066812_10096792	3300005105	Soil	MIGYVDMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANV
Ga0066810_100042771	3300005169	Soil	MIGYVDMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSIYLKEKYGT*
Ga0066810_100690501	3300005169	Soil	MTEYIDMKCAICGYEWKITEKRYAVYPFKICENCALIGPNEPAHFEVLKRKSAPSFLKDRESIIVSGKEMQSLYEDYYNQLANVSKYLREKYGK*
Ga0066811_10072231	3300005185	Soil	MIGYVDMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSIY
Ga0066676_100129701	3300005186	Soil	MTEYIDMKCAICGYEWKITEKRYALYPFKICENCALIGPNEPAHFEVSKRKPAPSFLKDRKSIIVSEKEMQSLYTEYYNELANVSKYLREKYGK*
Ga0065717_10049071	3300005276	Arabidopsis Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKKPVLSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0065716_10002662	3300005277	Arabidopsis Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0065704_100011158	3300005289	Switchgrass Rhizosphere	MTEYVHMKCVICGYEWKLTEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0065704_100313492	3300005289	Switchgrass Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPKXPPHFKVSKRKPVPTFLKDRXSIIVSXEEMHRLYXEYYNQLANVSKYLKEKYGTKSNAI*
Ga0065715_100893434	3300005293	Miscanthus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0065705_103110751	3300005294	Switchgrass Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPKEPPHFKVSKRKPVPTFLKDRASIIVSEEEMHRLYEEYYNQLANVSKYLKEKYGTKSNAI*
Ga0065705_106914351	3300005294	Switchgrass Rhizosphere	MTEYVDMKCAICGYEWKISEKRHGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRQSIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0065707_100304592	3300005295	Switchgrass Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPKEPPHFKVSKRKPVPTFLKDRASIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
Ga0068853_1001531503	3300005539	Corn Rhizosphere	ICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0068856_1005514853	3300005614	Corn Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAHFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0068859_1010632602	3300005617	Switchgrass Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0068861_1006946691	3300005719	Switchgrass Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYG
Ga0081455_100065495	3300005937	Tabebuia Heterophylla Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
Ga0075417_104210851	3300006049	Populus Rhizosphere	MTEYVDIKCAICGYEWKLTEKRYGLYPYKICENCALIGPNEPPQFRVSKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0075432_100109563	3300006058	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSKYLKEKYGT*
Ga0075432_104237841	3300006058	Populus Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0075428_1000952373	3300006844	Populus Rhizosphere	MTEYVDIKCAICGYEWKLTEKRYGLYPYKICENCALIGPNEPPQFRASKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0075431_1012341191	3300006847	Populus Rhizosphere	HMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
Ga0075433_101301102	3300006852	Populus Rhizosphere	MTEYVHMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPQFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSKYLKEKYGT*
Ga0075434_1005655281	3300006871	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLRSAPSFLKNRESIIVSEEEMHRLYNEYYNQLSNVSKYLKEKYGT*
Ga0075429_1001174692	3300006880	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYEEYYNQLANVSKYLKEKYGTKSNAI*
Ga0068865_1002194202	3300006881	Miscanthus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMRRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0075419_103900261	3300006969	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRESIIVSEDEMHKLYDEYYNQLANVSKYLKEKYGT*
Ga0075435_1001923031	3300007076	Populus Rhizosphere	MTEYVHMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPQFRASKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT*
Ga0075435_1018870201	3300007076	Populus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERY
Ga0066710_1000887324	3300009012	Grasslands Soil	MTEYIDMKCAICGYEWKITEKRYALYPFKICENCALIGPNEPAHFEVSKRKPAPSFLKDRKSIIVSEKEMQNLYTEYYNELANVSKYLREKYGK
Ga0111539_100106909	3300009094	Populus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0105245_105122142	3300009098	Miscanthus Rhizosphere	MKCAICGYEWKFNERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0114129_110787101	3300009147	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEAPHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI*
Ga0114129_116139301	3300009147	Populus Rhizosphere	MKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPQFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSKYLKEKY
Ga0111538_112793192	3300009156	Populus Rhizosphere	MTEYVHMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLRSAPSFLKNRESIIVSEEEMHRLYNEYYNQLSNVSKYLKE
Ga0075423_104467691	3300009162	Populus Rhizosphere	MKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLRSAPSFLKNRESIIVSEEEMHRLYNEYYNQLSNVSKYLKEKYGT*
Ga0075423_127186741	3300009162	Populus Rhizosphere	MTEHVDIKCGICGYEWKLTEKRSGLYPYKICENCALIGPNEPPQFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSKYLKEKY
Ga0105241_118229911	3300009174	Corn Rhizosphere	MKCAICGYEWKFSERRHKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0105069_10010843	3300009800	Groundwater Sand	MTEYIDMKCAICGYEWKITEKRYPVYPFKICENCALIGLNEPAHFEVSKRKSAPSFLKDRESIIVSVKEMRSLYEEYYNQLANVSKYLREKYGK*
Ga0105063_10167701	3300009804	Groundwater Sand	MKCAICGYEWKITEKRYSVYPFKICENCALIGPNEPAHFEVLKRKSAPSFLKDRESIIVSVKEMRSLYEEYYNQLANVSKYLREKYGK*
Ga0126382_112011211	3300010047	Tropical Forest Soil	MKCAICGYEWKFSERRHKLYPYKICENCALIGPNEPAQFKVSKLKPVPSFLKDRKAIIVSEPEMQRLYDEYYNQLANVSKYLKEKYGE*
Ga0126370_105000491	3300010358	Tropical Forest Soil	MKCAICGYEWKFSERRHKLYPYKICENCALIGPNEPAQFKVSKLNPVPSFLKDREAIIVSETEMQRLYDEYYNQLANVSRYLKEKYGE*
Ga0126377_100341013	3300010362	Tropical Forest Soil	MKCAICGYEWKFSERRHKLYPYKICENCALIGPNEPAQFKVSKLKPVPSFLKDRKAIIVSEPEMQRLYDEYYNQLANVSKYLKEKYG*
Ga0157317_10012632	3300012475	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0157353_10001673	3300012496	Unplanted Soil	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKKPVPSFLKDREAIIVSESEMQKLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0157351_10001413	3300012501	Unplanted Soil	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDRETIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0157339_10046101	3300012505	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0157315_10199271	3300012508	Arabidopsis Rhizosphere	MKCVICGYEWKFSERRYKFYPYKICENCALIGPNEPAQFKVSKKPVLSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0157338_10034382	3300012515	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKEKYGE*
Ga0164300_106622382	3300012951	Soil	AICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0164298_102547801	3300012955	Soil	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTTS*
Ga0157375_101192861	3300013308	Miscanthus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAQSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS*
Ga0132258_122054652	3300015371	Arabidopsis Rhizosphere	MKCAICGYEWKFSEKRYKLYPYKICENCALIGPNEPAQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKEKYGNKSTAI*
Ga0132258_127012402	3300015371	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGKSTAS*
Ga0132258_127905112	3300015371	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRHKLYPYKICENCALIGPNEPAQFKVSKLNPVPSFLKDREAIIVSEPEMQRIYDEYYNQLANVSKYLKEKYG*
Ga0132258_136140102	3300015371	Arabidopsis Rhizosphere	MKCAICGYEWKFSQRRHKLYPYKICENCALIGPNEPAQFKVSKLKAVPSFLKDRDAIIVSESKMQKLYDEYYNQLANVSKYLKEKYGE*
Ga0132257_1003147381	3300015373	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNTSTAG*
Ga0132255_1029862582	3300015374	Arabidopsis Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSK
Ga0132255_1057933331	3300015374	Arabidopsis Rhizosphere	MKCAICGYEWKFSEKRYKLYPYKICENCALIGPNEPAQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKY
Ga0163161_106817391	3300017792	Switchgrass Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0184610_10961832	3300017997	Groundwater Sediment	MTGYVDMKCALCGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0184608_100061864	3300018028	Groundwater Sediment	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0184608_103862951	3300018028	Groundwater Sediment	MKCAICGYEWKITKKRYDNYPFKICENCALIGPNEPANFNVPKGKVVPSLLKDRESIIVSNEEMHRLYEEYYRQLANVS
Ga0184620_100054614	3300018051	Groundwater Sediment	MNEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0184635_100053766	3300018072	Groundwater Sediment	MKCAICGYEWKITKKRYDNYPFKICENCALIGPNEPANFNVPKGKVVPSFLKDRESIIVSNEEMHRLYEEYYRQLANVS
Ga0184632_100075991	3300018075	Groundwater Sediment	EWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0184625_106500661	3300018081	Groundwater Sediment	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAIXYCNPSNKVLRHLTNH
Ga0222625_11597901	3300022195	Groundwater Sediment	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAIXYCNPSNKVLR
Ga0222622_106626641	3300022756	Groundwater Sediment	MNEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYG
Ga0207697_100035541	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207655_12346931	3300025728	Miscanthus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207642_100720552	3300025899	Miscanthus Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207704_100437821	3300025938	Miscanthus Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMRRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207667_122306131	3300025949	Corn Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207712_101891603	3300025961	Switchgrass Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVS
Ga0207668_120335981	3300025972	Switchgrass Rhizosphere	MKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPGQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVS
Ga0209470_10249401	3300026324	Soil	MTEYIDMKCAICGYEWKITEKRYALYPFKICENCALIGPNEPAHFEVSKRKPAPSFLKDRKSIIVSEKEMQSLYTEYYNELANVSKYLREKYGK
Ga0209470_10943763	3300026324	Soil	MTEYLDMKCAICGYEWKISEKRYGLYPYKICGNCALIGPNEPAHFKVSKRKPVPSFLKGREXIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAIXYCNPSNKVLRHLTNHCKFXFDLCXLF
Ga0209884_10043021	3300027013	Groundwater Sand	MTEYIDMKCAICGYEWKITEKRYPVYPFKICENCALIGPNEPAHFEVLKRKSAPSFLKDRESIIVSVKEMRSLYEEYYNQLANVSKYLREKYGK
Ga0208890_10109632	3300027523	Soil	MIGYVDMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSIYLKEKYGT
Ga0207981_10052582	3300027560	Soil	MIGYVDMKCAICGYEWKLSEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLAKVSKYLKEKYGTKSNAI
Ga0209814_100236342	3300027873	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRASIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0209814_100592532	3300027873	Populus Rhizosphere	MTEYVDIKCAICGYEWKLTEKRYGLYPYKICENCALIGPNEPPQFRVSKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT
Ga0209481_105510361	3300027880	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSNTXK
Ga0207428_1000067239	3300027907	Populus Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0207428_100090212	3300027907	Populus Rhizosphere	MTEYVDIKCAICGYEWKLTEKRYGLYPYKICENCALIGPNEPPQFRASKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT
Ga0207428_100423123	3300027907	Populus Rhizosphere	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPPHFKVSKLKPVPSFLKNRESIIVSEEEMHKLYDEYYNQLANVSKYLKEKYGT
Ga0209382_116444051	3300027909	Populus Rhizosphere	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTASXN
Ga0307290_101002571	3300028791	Soil	MTGYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGTKSNAI
Ga0307302_103118601	3300028814	Soil	MTEYVDMKCAICGYEWKISEKRYGLYPYKICENCALIGPNEPAHFKVSKRKPVPSFLKDRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYAN
Ga0310813_101857302	3300031716	Soil	MKCAICGYEWKLSERRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYMKERYGNKSTAS
Ga0307469_100953402	3300031720	Hardwood Forest Soil	MTEYVHMKCVICGYERKLTEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT
Ga0307468_1000540392	3300031740	Hardwood Forest Soil	MTEYVHMKCVICGYEWKLTEKRYGLYPYKICENCALIGPNEPPHFKVPKLKPVPSFLKNRESIIVSEEEMHRLYDEYYNQLANVSKYLKEKYGT
Ga0310897_1000026910	3300032003	Soil	MTKYIAMKCAICGYEWKFSEGRYKLYPYKICENCALIGPNEPAQFKVSKLKIAPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS
Ga0310810_100440652	3300033412	Soil	MTKYIAMKCAICGYEWKFSERRYKLYPYKICENCALIGPNEPAQFKVSKKPVPSFLKDREAIIVSESEMQRLYDEYYNQLANVSKYLKERYGNKSTAS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090046

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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