Metagenome / Metatranscriptome Family F090003

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090003
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	61 residues
Representative Sequence	HGDMDTTMVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK
Number of Associated Samples	92
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.56 %
% of genes near scaffold ends (potentially truncated)	89.81 %
% of genes from short scaffolds (< 2000 bps)	90.74 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (75.926 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.037 % of family members)
Environment Ontology (ENVO)	Unclassified (40.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.889 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.56% β-sheet: 0.00% Coil/Unstructured: 64.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF08714	Fae	16.67
PF00557	Peptidase_M24	3.70
PF00578	AhpC-TSA	2.78
PF01968	Hydantoinase_A	2.78
PF09127	Leuk-A4-hydro_C	1.85
PF13505	OMP_b-brl	1.85
PF02416	TatA_B_E	1.85
PF06778	Chlor_dismutase	1.85
PF09587	PGA_cap	1.85
PF06026	Rib_5-P_isom_A	0.93
PF00083	Sugar_tr	0.93
PF03928	HbpS-like	0.93
PF08241	Methyltransf_11	0.93
PF07676	PD40	0.93
PF00593	TonB_dep_Rec	0.93
PF10503	Esterase_PHB	0.93
PF07715	Plug	0.93
PF13620	CarboxypepD_reg	0.93
PF13570	PQQ_3	0.93
PF12796	Ank_2	0.93
PF01243	Putative_PNPOx	0.93
PF13011	LZ_Tnp_IS481	0.93
PF13263	PHP_C	0.93
PF00275	EPSP_synthase	0.93
PF01523	PmbA_TldD	0.93
PF12802	MarR_2	0.93
PF13561	adh_short_C2	0.93
PF00072	Response_reg	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG1795	Formaldehyde-activating enzyme (5,6,7,8-tetrahydromethanopterin hydrolyase)	Energy production and conversion [C]	16.67
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	1.85
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	1.85
COG3253	Coproheme decarboxylase/chlorite dismutase	Coenzyme transport and metabolism [H]	1.85
COG0120	Ribose 5-phosphate isomerase	Carbohydrate transport and metabolism [G]	0.93
COG0312	Zn-dependent protease PmbA/TldA or its inactivated homolog	General function prediction only [R]	0.93

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	75.93 %
Unclassified	root	N/A	24.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	75.93 %
Unclassified	root	N/A	24.07 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	75.93 %
Unclassified	root	N/A	24.07 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.04 %
Unclassified	root	N/A	24.07 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	8.33 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.78 %
Unclassified	root	N/A	24.07 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.85 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	1.85 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.85 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.93 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	26.85 %
Unclassified	root	N/A	24.07 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.85 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.93 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.93 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.93 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingomonadales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales	25.93 %
Unclassified	root	N/A	24.07 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	1.85 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.93 %
Pseudanabaenales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	25.93 %
Unclassified	root	N/A	24.07 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1.85 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.93 %
Methylobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter	0.93 %
Leptolyngbyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	25.93 %
Unclassified	root	N/A	24.07 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1.85 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.93 %
Phormidesmis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Phormidesmis	0.93 %
Methylobacter tundripaludum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	25.93 %
Unclassified	root	N/A	24.07 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1.85 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Actinomadura atramentaria	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	0.93 %
Phormidesmis priestleyi	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Phormidesmis → Phormidesmis priestleyi	0.93 %
Methylobacter tundripaludum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	25.93 %
Unclassified	root	N/A	24.07 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1.85 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.85 %
Phormidesmis priestleyi Ana	isolate	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Phormidesmis → Phormidesmis priestleyi → Phormidesmis priestleyi Ana	0.93 %
Actinomadura atramentaria	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	0.93 %
Methylobacter tundripaludum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	0.93 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	0.93 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.93 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.93 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002077\|JGI24744J21845_10072100	Not Available	630	Open in IMG/M
3300003267\|soilL1_10135617	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1028	Open in IMG/M
3300003324\|soilH2_10318818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1323	Open in IMG/M
3300004114\|Ga0062593_100926706	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	884	Open in IMG/M
3300004463\|Ga0063356_102277059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	826	Open in IMG/M
3300004801\|Ga0058860_12015919	Not Available	650	Open in IMG/M
3300005093\|Ga0062594_101078376	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005093\|Ga0062594_101850329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura → Actinomadura atramentaria	638	Open in IMG/M
3300005294\|Ga0065705_11167985	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005340\|Ga0070689_100333554	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300005353\|Ga0070669_101236254	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300005354\|Ga0070675_100295290	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300005354\|Ga0070675_101754338	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300005355\|Ga0070671_101343263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	631	Open in IMG/M
3300005364\|Ga0070673_100112294	All Organisms → cellular organisms → Bacteria	2262	Open in IMG/M
3300005364\|Ga0070673_100236873	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300005364\|Ga0070673_101904770	Not Available	564	Open in IMG/M
3300005455\|Ga0070663_100467966	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300005456\|Ga0070678_100260703	All Organisms → cellular organisms → Bacteria → Proteobacteria	1458	Open in IMG/M
3300005457\|Ga0070662_100784035	Not Available	810	Open in IMG/M
3300005459\|Ga0068867_100617186	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300005459\|Ga0068867_101578575	Not Available	613	Open in IMG/M
3300005466\|Ga0070685_10945619	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005471\|Ga0070698_100158329	All Organisms → cellular organisms → Bacteria	2210	Open in IMG/M
3300005535\|Ga0070684_101653894	Not Available	604	Open in IMG/M
3300005539\|Ga0068853_101170038	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300005546\|Ga0070696_101615465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	557	Open in IMG/M
3300005614\|Ga0068856_100582444	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300005618\|Ga0068864_100125589	Not Available	2299	Open in IMG/M
3300005718\|Ga0068866_10532088	Not Available	783	Open in IMG/M
3300005834\|Ga0068851_10915797	Not Available	550	Open in IMG/M
3300005836\|Ga0074470_10896143	All Organisms → cellular organisms → Bacteria → Proteobacteria	896	Open in IMG/M
3300005840\|Ga0068870_10216497	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1170	Open in IMG/M
3300005840\|Ga0068870_10241726	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300005841\|Ga0068863_101504908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	682	Open in IMG/M
3300005842\|Ga0068858_100091459	All Organisms → cellular organisms → Bacteria	2832	Open in IMG/M
3300006854\|Ga0075425_101657802	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300006881\|Ga0068865_101677478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	572	Open in IMG/M
3300009098\|Ga0105245_12734526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	546	Open in IMG/M
3300009156\|Ga0111538_10404971	All Organisms → cellular organisms → Bacteria	1728	Open in IMG/M
3300010036\|Ga0126305_10328145	Not Available	998	Open in IMG/M
3300010040\|Ga0126308_10024988	All Organisms → cellular organisms → Bacteria → Proteobacteria	3271	Open in IMG/M
3300010360\|Ga0126372_10104469	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2141	Open in IMG/M
3300010396\|Ga0134126_11219412	Not Available	835	Open in IMG/M
3300010397\|Ga0134124_12679790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	542	Open in IMG/M
3300010401\|Ga0134121_11677294	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300011119\|Ga0105246_10039907	All Organisms → cellular organisms → Bacteria	3165	Open in IMG/M
3300012200\|Ga0137382_11307019	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300012212\|Ga0150985_100320152	Not Available	581	Open in IMG/M
3300012212\|Ga0150985_104052033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	505	Open in IMG/M
3300012212\|Ga0150985_108834463	Not Available	808	Open in IMG/M
3300012212\|Ga0150985_118159413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Pseudanabaenales → Leptolyngbyaceae → Phormidesmis → Phormidesmis priestleyi → Phormidesmis priestleyi Ana	805	Open in IMG/M
3300012212\|Ga0150985_121313713	Not Available	882	Open in IMG/M
3300012469\|Ga0150984_103995710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	516	Open in IMG/M
3300012469\|Ga0150984_104740903	Not Available	578	Open in IMG/M
3300012486\|Ga0157331_1039332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	505	Open in IMG/M
3300012893\|Ga0157284_10300391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	526	Open in IMG/M
3300012905\|Ga0157296_10158228	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	685	Open in IMG/M
3300012907\|Ga0157283_10162456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	670	Open in IMG/M
3300013100\|Ga0157373_11508350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	513	Open in IMG/M
3300014969\|Ga0157376_12171040	Not Available	594	Open in IMG/M
3300015200\|Ga0173480_10037580	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300015371\|Ga0132258_12841170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylobacter → Methylobacter tundripaludum	1205	Open in IMG/M
3300015371\|Ga0132258_13840471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	1023	Open in IMG/M
3300015371\|Ga0132258_13876152	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300015374\|Ga0132255_103395822	Not Available	678	Open in IMG/M
3300015374\|Ga0132255_104636609	All Organisms → cellular organisms → Bacteria → Proteobacteria	582	Open in IMG/M
3300018064\|Ga0187773_11010411	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300018429\|Ga0190272_12769790	Not Available	540	Open in IMG/M
3300018469\|Ga0190270_10976582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	871	Open in IMG/M
3300018476\|Ga0190274_13848042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	508	Open in IMG/M
3300021082\|Ga0210380_10415327	Not Available	616	Open in IMG/M
3300021406\|Ga0210386_10997367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	714	Open in IMG/M
3300022880\|Ga0247792_1131143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	533	Open in IMG/M
3300025315\|Ga0207697_10276195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	744	Open in IMG/M
3300025885\|Ga0207653_10190589	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	770	Open in IMG/M
3300025903\|Ga0207680_10930754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	623	Open in IMG/M
3300025912\|Ga0207707_10255177	All Organisms → cellular organisms → Bacteria	1523	Open in IMG/M
3300025923\|Ga0207681_11085988	All Organisms → cellular organisms → Bacteria → Proteobacteria	672	Open in IMG/M
3300025931\|Ga0207644_11188171	Not Available	641	Open in IMG/M
3300025934\|Ga0207686_11091880	Not Available	650	Open in IMG/M
3300025945\|Ga0207679_12197523	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300025960\|Ga0207651_12027126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	517	Open in IMG/M
3300026035\|Ga0207703_10261081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	1566	Open in IMG/M
3300026078\|Ga0207702_11634047	Not Available	637	Open in IMG/M
3300026095\|Ga0207676_10083827	Not Available	2597	Open in IMG/M
3300026118\|Ga0207675_102564185	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300026121\|Ga0207683_10324593	All Organisms → cellular organisms → Bacteria	1410	Open in IMG/M
3300028047\|Ga0209526_10427784	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300028380\|Ga0268265_12662403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	506	Open in IMG/M
3300028812\|Ga0247825_10019872	All Organisms → cellular organisms → Bacteria → Proteobacteria	4395	Open in IMG/M
3300031091\|Ga0308201_10126367	Not Available	773	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1128989	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300031547\|Ga0310887_10920899	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300031562\|Ga0310886_10228841	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300031708\|Ga0310686_109938620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	530	Open in IMG/M
3300031708\|Ga0310686_118024086	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1118	Open in IMG/M
3300031716\|Ga0310813_11465061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	635	Open in IMG/M
3300031820\|Ga0307473_11179933	All Organisms → cellular organisms → Bacteria	568	Open in IMG/M
3300031854\|Ga0310904_10074681	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	1782	Open in IMG/M
3300031858\|Ga0310892_10522351	Not Available	794	Open in IMG/M
3300032017\|Ga0310899_10031794	Not Available	1807	Open in IMG/M
3300032075\|Ga0310890_10177906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	1437	Open in IMG/M
3300032075\|Ga0310890_11506225	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	554	Open in IMG/M
3300032144\|Ga0315910_11084220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	625	Open in IMG/M
3300032955\|Ga0335076_10677260	All Organisms → cellular organisms → Bacteria	913	Open in IMG/M
3300034149\|Ga0364929_0274698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	571	Open in IMG/M
3300034820\|Ga0373959_0222387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → unclassified Sphingomonadales → Sphingomonadales bacterium	507	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.78%
Environmental	Environmental	47.22%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	51.85%
Terrestrial	Environmental → Terrestrial	45.37%
Aquatic	Environmental → Aquatic	1.85%
Human	Host-Associated → Human	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.44%
Rhizoplane	Host-Associated → Plants → Rhizoplane	29.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.22%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Floodplain	Environmental → Terrestrial → Floodplain	0.93%
Digestive System	Host-Associated → Human → Digestive System	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.26%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	18.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.26%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.85%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Sand	Environmental → Terrestrial → Soil → Sand	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.93%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	18.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.48%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.93%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.41%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.56%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.70%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.78%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.85%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.85%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.93%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.93%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.93%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012486	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.120510	Environmental	Open in IMG/M
3300012893	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S059-202B-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300022880	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S106-311C-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M
3300034820	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24744J21845_100721001	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	VFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
soilL1_101356172	3300003267	Sugarcane Root And Bulk Soil	HGDMDTTMVFSASEAMVQHAKAKGVDATWLPVPGGAHTDAWAQPAIVNQIFDFFDAHKTKTK*
soilH2_103188182	3300003324	Sugarcane Root And Bulk Soil	GDMDTTMVFSASEAMVQHAKAKGVDATWLPVPGGAHTDAWAQPAIVNQIFDFFDAHKTKTK*
Ga0062593_1009267063	3300004114	Soil	DTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0063356_1022770591	3300004463	Arabidopsis Thaliana Rhizosphere	TTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKAKLK*
Ga0058860_120159192	3300004801	Host-Associated	GDMDTTMVFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0062594_1010783762	3300005093	Soil	VVHGDMDTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0062594_1018503291	3300005093	Soil	LVIHGDMDTTMVFSASEAMVQHAKAKGVNATWLPVPGGAHTDAWAQPAIIGQIFDFFDAHKTKSR*
Ga0065705_111679851	3300005294	Switchgrass Rhizosphere	HGDADTTMVFSASQAMVEHAKAKGVDATWLPVAGGAHTDAWAQPEILNQIFDFFDAHKAKAR*
Ga0070689_1003335541	3300005340	Switchgrass Rhizosphere	HGDMDTVMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEVISQIFDFFDKYKKK
Ga0070669_1012362542	3300005353	Switchgrass Rhizosphere	VLVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070675_1002952901	3300005354	Miscanthus Rhizosphere	PVLYVHGDGDTTMDYAAGKAMIDRAKARGVNATFLGVQGGIHTDAWAQPEIIKQIFDFFDAHKTKAK*
Ga0070675_1017543381	3300005354	Miscanthus Rhizosphere	LVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070671_1013432631	3300005355	Switchgrass Rhizosphere	DTVMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEIISQIFDFFDNYRKK*
Ga0070673_1001122944	3300005364	Switchgrass Rhizosphere	VLVIHGDMDTTMVFDASKTMVDHAKAKGVDATWLPVAGGLHTDAWAQPEIIAKIFDFFDAHPRK*
Ga0070673_1002368734	3300005364	Switchgrass Rhizosphere	VFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK*
Ga0070673_1019047701	3300005364	Switchgrass Rhizosphere	HGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVVGGMHIDAWAQPEILKQTFDFFDKYKTKQK*
Ga0070663_1004679661	3300005455	Corn Rhizosphere	VLVIHGDMDTTMVFDASKTMVDHAKAKGVDATWLPVAGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0070678_1002607031	3300005456	Miscanthus Rhizosphere	GDMDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0070662_1007840352	3300005457	Corn Rhizosphere	DASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0068867_1006171861	3300005459	Miscanthus Rhizosphere	LVIHGDMDTTMVFDASKTMVDHAQAKGVDATWLPVAGGLHTDAWAQPEVIAKIFDFFDTHARK*
Ga0068867_1015785752	3300005459	Miscanthus Rhizosphere	DMDTTMVFAASKTMVDHAREKGVDATWLPVAGGLHTDAWAQPEIITQIFDFFDKRAAKAK
Ga0070685_109456191	3300005466	Switchgrass Rhizosphere	LVVHGDMDTTMVFEASKAMVDHATAKGLNVTWLPVIGGAHVDAWAQPEILKQTFDFFDKNATKKK*
Ga0070698_1001583294	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	GDMDTTMVFDASKVMLDHAKEKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK*
Ga0070684_1016538941	3300005535	Corn Rhizosphere	MVFDGSKAMVDHAKAKGVDATWLPVIGGTHVDAWAQPEILKQTFDFFDAHKKKR*
Ga0068853_1011700382	3300005539	Corn Rhizosphere	MVFDASKTMVDHAKAKGVDVAWLPVAGGKHVDAWAQPEIITQIFDFFDKHKMKTR*
Ga0070696_1016154652	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	GDMDTTMVFSASQTMVEHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRAKLK*
Ga0068856_1005824442	3300005614	Corn Rhizosphere	KKVPVLVVHGDQDIVMVFDASKAMVDHAKAQGVDATWLPVVGGAHVDAWAQPEVIKQIFDFFDAHKK*
Ga0068864_1001255895	3300005618	Switchgrass Rhizosphere	FDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0068866_105320882	3300005718	Miscanthus Rhizosphere	HGDMDTTMVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
Ga0068851_109157972	3300005834	Corn Rhizosphere	TMVFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK*
Ga0074470_108961432	3300005836	Sediment (Intertidal)	AVPGDNDKAMVFAGSKAMVDHARAKGVDATWLPVAGGGHVDAWAQPDVINQMFDFFDAHPGKQ*
Ga0068870_102164972	3300005840	Miscanthus Rhizosphere	NIPVFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFVGVVGGQHTDAWAQPEIIKQIFDFFDANKTKLK*
Ga0068870_102417262	3300005840	Miscanthus Rhizosphere	VMVFDASKTMVDHAKAKGVNATWLPVAGGMHTDAWAQPEIISQIFDFFDKYRKK*
Ga0068863_1015049083	3300005841	Switchgrass Rhizosphere	GDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKMK*
Ga0068858_1000914591	3300005842	Switchgrass Rhizosphere	MDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK*
Ga0075425_1016578021	3300006854	Populus Rhizosphere	VIHGDADTTMVFSASESMVEHAKAKGVDATWLPVPGGAHTDAWAQPEIVNRIFDFFDAHKTKMK*
Ga0068865_1016774782	3300006881	Miscanthus Rhizosphere	MNFDASKTMVDHAKAKGVNATWLPVQGGAHTDAWAQPAVIAQIFDFFGMHKK*
Ga0105245_127345263	3300009098	Miscanthus Rhizosphere	VFSASEAMVEHAKAKGVDATWLPVAGGAHTDAWAQPEIVNRIFDFFDAHKAKMK*
Ga0111538_104049712	3300009156	Populus Rhizosphere	MDTTMVFDASKVMVDHAKAKGIDATWLPVPGGAHTDAWAQQDVLNKTFDFFDAHKTKLK*
Ga0126305_103281451	3300010036	Serpentine Soil	VLVVHGDMDTTMVFEGSKMMVDHAKGKGVNATWLPVIGGAHTDAWAQPDILKQTFDFFDAHKARQK*
Ga0126308_100249885	3300010040	Serpentine Soil	KNVPVLVVHGDMDTTMAFDASKAMVDHATATAVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNVAKRK*
Ga0126372_101044693	3300010360	Tropical Forest Soil	VFDASKTMVDHAKARGVDATWLPVPGGKHVDAWAQPEILGQIFDFFDRHVAKAK*
Ga0134126_112194121	3300010396	Terrestrial Soil	KNVPVLVVHGDMDTTMVFDASKAMVEHAKAKGVDATCLPVIGGTHVDAWAQPEILKKTFDFFDAHRKKKG*
Ga0134124_126797901	3300010397	Terrestrial Soil	KHVPVLVIHGDKDNVMNFDASKTMVDHAKAKGVNATWLPVQGGAHTDAWAQPAVIAQIFDFFGMHKK*
Ga0134121_116772942	3300010401	Terrestrial Soil	FEASKVMVDHAKAKGVEATWLPVIGGKHVDAWAQPEIINQIFDFFDAHKTKAR*
Ga0105246_100399071	3300011119	Miscanthus Rhizosphere	MDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK*
Ga0137382_113070192	3300012200	Vadose Zone Soil	DTTMVFDASKLMVDHAKAKGVDATWLPVPGGKHVDAWAQPEIIAKIFDFFDAHKTKAR*
Ga0150985_1003201522	3300012212	Avena Fatua Rhizosphere	FDGSKAMVDHAKAKGLNVTWLPVIGGQHVDAWAQPEIIKQTFDFFDKYKTKQK*
Ga0150985_1040520332	3300012212	Avena Fatua Rhizosphere	VLVVHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVIGGMHTDAWAQPEILKQTFDFFDKYKARQK*
Ga0150985_1088344631	3300012212	Avena Fatua Rhizosphere	VHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHKARQK*
Ga0150985_1181594131	3300012212	Avena Fatua Rhizosphere	HGDGDTTMDFNAGKAMIDRAKAKGVNATFVGVAGGQHTDAWAQPEIIKQIFDFFDANKTKRK*
Ga0150985_1213137131	3300012212	Avena Fatua Rhizosphere	DKDTTMVFDASKTMVDHAKAKGLNVTWLPVIGGQHVDAWALPEVISQEFDFFDKYKTKQGKAAAPRSGRN*
Ga0150984_1039957102	3300012469	Avena Fatua Rhizosphere	VLVVHGDKDNVMNFEASKAMVDHAKAKGVDATWLPVQGGAHTDAWAQPAVIAQIFDFFDAHRK*
Ga0150984_1047409032	3300012469	Avena Fatua Rhizosphere	HGDMDTTMVFDASKTMVDHAKAKGLNVTWLPVIGGQHVDAWAQPEIINQTFDFFDKYKAKQK*
Ga0157331_10393321	3300012486	Soil	DADTTMVFSASQSMVEHAKAKGVDATWLPVAGGAHTDAWAQPEILKQIFDFFDTHKTKGK
Ga0157284_103003911	3300012893	Soil	MVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0157296_101582282	3300012905	Soil	MVFDASKTMVDHAKAKGIDATWLPVPGGAHADAWAQQEILNKTFDFFDAHKTKLK*
Ga0157283_101624562	3300012907	Soil	VFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK*
Ga0157373_115083501	3300013100	Corn Rhizosphere	GDKDTVMVFEASKAMVDHAKAKGVDVTWLPVIGGGHVDAWARPEVIEQIFDFFNAHVMSARRSAD*
Ga0157376_121710401	3300014969	Miscanthus Rhizosphere	TTMDFNAGKAMIDRAKTKGVNATFMGVTGGQHTDAWAQPEIIKQIFDFFDANNTKLK*
Ga0173480_100375805	3300015200	Soil	LKNIPVFYVHGDGDTTMDFNAGKAMIDRAKAKGVNATFLGVTGGQHTDAWAQPEIIKQIFDFYDANKTKGK*
Ga0132258_128411703	3300015371	Arabidopsis Rhizosphere	VVHGDMDTTMVFDASKVMVDHAKAKGVDATWLPVPGGAHTDAWAQPEILNKTFDFFDAHKARSK*
Ga0132258_138404713	3300015371	Arabidopsis Rhizosphere	VLVIHGDMDTTMVFDASRTMVDHAKAKGVDATWLPVAGGMHTDAWAQPEIITKIFDFFDAHPRK*
Ga0132258_138761523	3300015371	Arabidopsis Rhizosphere	PVLVVHGDMDTTMVFDASKAMVDHAAAKGINVTWLPVIGGAHVDAWAQPEILKQTFDFFEKNAAKKK*
Ga0132255_1033958222	3300015374	Arabidopsis Rhizosphere	VPVLVVHGDMDTTMVFDGSKAMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKAKQK*
Ga0132255_1046366091	3300015374	Arabidopsis Rhizosphere	KNLPVLVVHGDMDTTMVFAASKTMVDHAKAKGLNVTWLPVIGGAHVDAWAQPDIIKQTFDFFDKNATKKK*
Ga0187773_110104112	3300018064	Tropical Peatland	LVVHGDMDTTMVFEASKVMVDHAVAKGVNATWLPVPGGKHVDAWAQPGIISQVFDFFDKHASKAK
Ga0190272_127697902	3300018429	Soil	SFEASKVMVDHAKAKGVDVTWLPVTGGAHTDAWAQPEILTQTFDFFDRYRTKKK
Ga0190270_109765821	3300018469	Soil	GDMDTTMSFEASKVMVDHAKAKGVDVTWLPVTGGAHTDAWAQPDILKQTFDFFDKYRTKK
Ga0190274_138480422	3300018476	Soil	TVPVLVVHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILTQTFDFFDKYKTKQK
Ga0210380_104153272	3300021082	Groundwater Sediment	VLVVHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDKYKTKQK
Ga0210386_109973672	3300021406	Soil	TVMVFDASKAMVDHAKAKGVDATWLPVAGGAHTDAWAQPAVIEQIFDFFDAHRKKG
Ga0247792_11311432	3300022880	Soil	VFDASKTMVDHAKAKGLNVTWLPVVGGQHVDAWAQPEILKQTFDFFDKYKTKQK
Ga0207697_102761951	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MVFDASKTMVDHAKAKGVNVTWLPVIGGQHVDAWAQPEILKQTFDFFDKYKAKQK
Ga0207653_101905892	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	HGDMDTTMVFSASEAMVQHAKAKGVNATWLPVPGGAHTDAWAQPAIIGQIFDFFDAHKTKSR
Ga0207680_109307541	3300025903	Switchgrass Rhizosphere	HGDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKMK
Ga0207707_102551772	3300025912	Corn Rhizosphere	KLRKVAVLVVHGDKDSSMVFDASKAMVEHAKAKGVAATWLPVTGGMHTDAWAQPEVIKQIFDFFDAHKKKG
Ga0207681_110859881	3300025923	Switchgrass Rhizosphere	VHGDMDTTMVVDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNPTKKK
Ga0207644_111881711	3300025931	Switchgrass Rhizosphere	VFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHQARQK
Ga0207686_110918802	3300025934	Miscanthus Rhizosphere	VVHGDMDTTMVFEGSKVMVDHAKAKGVNATWLPVVGGMHTDAWAQPEILKQTFDFFDKYKTKQK
Ga0207679_121975231	3300025945	Corn Rhizosphere	GDMDATMVFDASKTMVDHAQAKGVDATWLPVPGGLHTDAWAQPEIVAKIFDFFDAHPRK
Ga0207651_120271261	3300025960	Switchgrass Rhizosphere	GDMDTVMVFDASKTMVDHAKAKGVNATWLPVVGGMHTDAWAQPEIISQIFDFFDKYRKK
Ga0207703_102610811	3300026035	Switchgrass Rhizosphere	MDFNAGKAMIDRAKAKGVNATFLGVAGGQHTDAWAQPEVIKQIFDFFDANKTKLK
Ga0207702_116340471	3300026078	Corn Rhizosphere	MVFDASKAMVDHAKAKGVDATWLPVIGGTHVDAWAQPEILKQTFDFFDAHKKKR
Ga0207676_100838275	3300026095	Switchgrass Rhizosphere	MVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK
Ga0207675_1025641851	3300026118	Switchgrass Rhizosphere	VHGDMDTTMVFDGSKVMVDHAKAKGVDATWLPVVGGSHVDAWAQPPVIAKIFDFFDAHGR
Ga0207683_103245931	3300026121	Miscanthus Rhizosphere	HGDMDTTMVFDASKTMVDHAQAKGVNATWLPVPGGLHTDAWAQPEIIAKIFDFFDSHPRK
Ga0209526_104277842	3300028047	Forest Soil	VLVVHGDMDTTMVFDASKAMVDHARAKGIDATWLPVAGGMHTDAWAQPEIIKQIFDFFDRHPTKAK
Ga0268265_126624032	3300028380	Switchgrass Rhizosphere	VLVVHGDKDNVMDFEGSKAMVDHAKAKGVDATWLPVAGGGHTDAWAQPSVLNQIFDFFDAHRKKS
Ga0247825_100198721	3300028812	Soil	DDEHGDMDTTMVFDGSKVMVDHAKAKGVNATWLPVVGGAHTDAWAQPEILKQTFDFYDKYETKQK
Ga0308201_101263671	3300031091	Soil	MVFEGSKVMVDHAKAKGVNATWLPVIGGAHTDAWAQPEILKQTFDFFDAHQARQK
(restricted) Ga0255312_11289892	3300031248	Sandy Soil	LVVHGDMDTTMVFDASKVMVDHAKAKGVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNTTKKK
Ga0310887_109208991	3300031547	Soil	MLFSASETMVAHAKAKGVDATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRTKLK
Ga0310886_102288411	3300031562	Soil	LVIHGDMDTTMLFSASETMVAHAKAKGVDATWLPVPGGAHTDAWAQPAIISQIFDFFDAHRTKLK
Ga0310686_1099386201	3300031708	Soil	DKDTVMVFDASKAMVDHAKAKGVDATWLPVPGGAHTDAWAQPEVIEQIFDFFDAHRKTG
Ga0310686_1180240863	3300031708	Soil	LKKVPVLVIHGDKDTVMVFDASKAMVDHAKAKGLDVTWLPVIGGMHVDAWAQPDVIKQIFDFFDAHKKKG
Ga0310813_114650611	3300031716	Soil	KLKSVPVLVVHGDMDTTMVFDASKVMVDHAKAKAIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKVK
Ga0307473_111799331	3300031820	Hardwood Forest Soil	VLVVHGDMDTTMVFEASRVMVDHAKAKGLDATWLPVVGGKHTDAWAQPEIVAQIFDFFDKHITKVK
Ga0310904_100746814	3300031854	Soil	MVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKTK
Ga0310892_105223512	3300031858	Soil	VFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAVINQIFDFFDAHKTKAK
Ga0310899_100317941	3300032017	Soil	LVIHGDMDTTMVFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAVINQIFDFFDAHKTKAK
Ga0310890_101779061	3300032075	Soil	VLVVHGDMDTTMVFDASKTMVDHAKAKGIDATWLPVPGGAHTDAWAQQEILNKTFDFFDAHKTKLK
Ga0310890_115062254	3300032075	Soil	VFSASETMVQHAKAKGVSATWLPVPGGAHTDAWAQPAIISQIFDFFDAHKTKTK
Ga0315910_110842202	3300032144	Soil	MEFAASEKMVEHAKAKGVSATWLPVPGGAHTDAWAQPAIINQIFDFFDAHRTKVN
Ga0335076_106772602	3300032955	Soil	TTMVFEASKVMVDHAVAKGVDATWLPVPGGKHVDAWAQPEIISQVFDFFDKHVGKAR
Ga0364929_0274698_359_565	3300034149	Sediment	VPVLVVHGDMDTTMVFEASKAMVDHATAKAVNVTWLPVIGGAHVDAWAQPDILKQTFDFFDKNAIKKK
Ga0373959_0222387_320_499	3300034820	Rhizosphere Soil	MDTTMVFEASKAMVDHAKAKGVDATWLPVIGGKHVDAWAQPEIINQIFDFFDAHKTKAH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters