Metagenome Family F089968

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089968
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	54 residues
Representative Sequence	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIG
Number of Associated Samples	67
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	91.67 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	84.26 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.148 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (44.444 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 56.58% β-sheet: 0.00% Coil/Unstructured: 43.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02738	MoCoBD_1	2.78
PF02203	TarH	1.85
PF08240	ADH_N	1.85
PF04392	ABC_sub_bind	1.85
PF01068	DNA_ligase_A_M	1.85
PF13414	TPR_11	0.93
PF00239	Resolvase	0.93
PF00392	GntR	0.93
PF00583	Acetyltransf_1	0.93
PF11546	CompInhib_SCIN	0.93
PF13365	Trypsin_2	0.93
PF03807	F420_oxidored	0.93
PF00005	ABC_tran	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	3.70
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.85
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.85
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.93
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.15 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	89.81 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	86.11 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.85 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	68.52 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.89 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.85 %
Unclassified	root	N/A	1.85 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.41 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	3.70 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Unclassified	root	N/A	1.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	3.70 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.78 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Unclassified	root	N/A	1.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Methylocella silvestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	3.70 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Unclassified	root	N/A	1.85 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	67.59 %
Methylocella silvestris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	3.70 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.85 %
Unclassified	root	N/A	1.85 %
Bradyrhizobium sp. Rc2d	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1046304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10070948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	882	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10146017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	570	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10108305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300000956\|JGI10216J12902_112930755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300005172\|Ga0066683_10123016	All Organisms → cellular organisms → Bacteria	1583	Open in IMG/M
3300005332\|Ga0066388_100289371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2282	Open in IMG/M
3300005332\|Ga0066388_100704172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1616	Open in IMG/M
3300005332\|Ga0066388_102647157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	914	Open in IMG/M
3300005332\|Ga0066388_102956877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	868	Open in IMG/M
3300005332\|Ga0066388_104584344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	703	Open in IMG/M
3300005332\|Ga0066388_106244244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300005332\|Ga0066388_107704997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300005454\|Ga0066687_10646875	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005713\|Ga0066905_100765582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300005713\|Ga0066905_100842120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005764\|Ga0066903_100254755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2714	Open in IMG/M
3300005764\|Ga0066903_100280880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2610	Open in IMG/M
3300005764\|Ga0066903_100604853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Rc2d	1901	Open in IMG/M
3300005764\|Ga0066903_103818502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	809	Open in IMG/M
3300005764\|Ga0066903_103857112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300005764\|Ga0066903_105121237	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	694	Open in IMG/M
3300005764\|Ga0066903_105675007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	656	Open in IMG/M
3300005764\|Ga0066903_106672987	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005764\|Ga0066903_107143475	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300005764\|Ga0066903_107772394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	551	Open in IMG/M
3300006903\|Ga0075426_10299696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1176	Open in IMG/M
3300006954\|Ga0079219_11039430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300010043\|Ga0126380_10991187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	707	Open in IMG/M
3300010046\|Ga0126384_11764241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300010047\|Ga0126382_12107274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300010048\|Ga0126373_10206469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1907	Open in IMG/M
3300010048\|Ga0126373_12466201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300010359\|Ga0126376_10817089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	912	Open in IMG/M
3300010360\|Ga0126372_11593921	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300010361\|Ga0126378_11723220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	712	Open in IMG/M
3300010361\|Ga0126378_12699235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	567	Open in IMG/M
3300010361\|Ga0126378_12922415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300010366\|Ga0126379_10022642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4749	Open in IMG/M
3300010366\|Ga0126379_10074379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2913	Open in IMG/M
3300010366\|Ga0126379_11451978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300010366\|Ga0126379_11834261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300010366\|Ga0126379_13122011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300010376\|Ga0126381_102319571	All Organisms → cellular organisms → Bacteria → Proteobacteria	771	Open in IMG/M
3300010376\|Ga0126381_104168948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300010398\|Ga0126383_10694734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1095	Open in IMG/M
3300010398\|Ga0126383_11108342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	881	Open in IMG/M
3300010398\|Ga0126383_11265627	All Organisms → cellular organisms → Bacteria → Proteobacteria	828	Open in IMG/M
3300010398\|Ga0126383_12164769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300010398\|Ga0126383_12258227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	630	Open in IMG/M
3300010403\|Ga0134123_13167202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300012200\|Ga0137382_10878436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300012209\|Ga0137379_11332991	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	623	Open in IMG/M
3300012211\|Ga0137377_10548658	All Organisms → cellular organisms → Bacteria	1093	Open in IMG/M
3300012923\|Ga0137359_11656980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	527	Open in IMG/M
3300012971\|Ga0126369_13118987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300016270\|Ga0182036_11799576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300016294\|Ga0182041_12109484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300016341\|Ga0182035_10353608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1222	Open in IMG/M
3300016341\|Ga0182035_11887962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	542	Open in IMG/M
3300016387\|Ga0182040_10452582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1018	Open in IMG/M
3300021178\|Ga0210408_10499225	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300021560\|Ga0126371_10967967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	993	Open in IMG/M
3300021560\|Ga0126371_13365881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300026319\|Ga0209647_1345788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300026548\|Ga0209161_10018965	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	4984	Open in IMG/M
3300028713\|Ga0307303_10080143	Not Available	728	Open in IMG/M
3300031545\|Ga0318541_10036302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2474	Open in IMG/M
3300031545\|Ga0318541_10481308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	694	Open in IMG/M
3300031561\|Ga0318528_10027604	All Organisms → cellular organisms → Bacteria	2770	Open in IMG/M
3300031564\|Ga0318573_10253583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	938	Open in IMG/M
3300031573\|Ga0310915_10113117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1847	Open in IMG/M
3300031679\|Ga0318561_10167216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1185	Open in IMG/M
3300031680\|Ga0318574_10544157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	680	Open in IMG/M
3300031681\|Ga0318572_10042737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2412	Open in IMG/M
3300031682\|Ga0318560_10356259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella silvestris	791	Open in IMG/M
3300031719\|Ga0306917_11114277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300031723\|Ga0318493_10149103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1209	Open in IMG/M
3300031736\|Ga0318501_10030007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2394	Open in IMG/M
3300031744\|Ga0306918_10947836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	669	Open in IMG/M
3300031763\|Ga0318537_10009295	Not Available	3281	Open in IMG/M
3300031768\|Ga0318509_10750863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300031770\|Ga0318521_10025303	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300031771\|Ga0318546_10429901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300031796\|Ga0318576_10064935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1612	Open in IMG/M
3300031819\|Ga0318568_10037267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2750	Open in IMG/M
3300031819\|Ga0318568_10506155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300031819\|Ga0318568_10521885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	740	Open in IMG/M
3300031833\|Ga0310917_10043482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2724	Open in IMG/M
3300031833\|Ga0310917_10071108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2183	Open in IMG/M
3300031833\|Ga0310917_10409853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	921	Open in IMG/M
3300031833\|Ga0310917_10608446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	742	Open in IMG/M
3300031879\|Ga0306919_11182088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300031890\|Ga0306925_10757162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1011	Open in IMG/M
3300031896\|Ga0318551_10066987	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1851	Open in IMG/M
3300031896\|Ga0318551_10321143	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	873	Open in IMG/M
3300031945\|Ga0310913_10042040	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300031945\|Ga0310913_10629073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300031946\|Ga0310910_10118206	All Organisms → cellular organisms → Bacteria → Proteobacteria	1991	Open in IMG/M
3300031946\|Ga0310910_10826429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	729	Open in IMG/M
3300031947\|Ga0310909_10572592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	944	Open in IMG/M
3300031947\|Ga0310909_11042871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	666	Open in IMG/M
3300032039\|Ga0318559_10450760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300032054\|Ga0318570_10208469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	883	Open in IMG/M
3300032063\|Ga0318504_10476470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	597	Open in IMG/M
3300032068\|Ga0318553_10024456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2842	Open in IMG/M
3300032076\|Ga0306924_11157280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	840	Open in IMG/M
3300032261\|Ga0306920_100674238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.07%
Host-Associated	Host-Associated	0.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	99.07%
Plants	Host-Associated → Plants	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	99.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.48%
Loam	Environmental → Terrestrial → Soil → Loam	17.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.70%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	33.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	23.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.70%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10463041	3300000580	Forest Soil	LSDTADAGAVKKALLIGVAVLFLATGTAHADNEKWEASFRQCHIRKWXSKDELAAIGWAR
AF_2010_repII_A1DRAFT_100709481	3300000597	Forest Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKD
AF_2010_repII_A1DRAFT_101460173	3300000597	Forest Soil	MKKALLIGVAALFLAAGAARADSEKWEASFRQCHIRKWFSKDELA
AF_2010_repII_A001DRAFT_101083051	3300000793	Forest Soil	MKKLLLTGVAALFLATGAAHADSEKWEASFRQCHIRKWFSKDELARIGWARETEG
JGI10216J12902_1129307553	3300000956	Soil	MKKMLLAGIAALFLATGTAHADNEKWEASFRQCHIRKWFSKDELAAI
Ga0066683_101230162	3300005172	Soil	MRKLFLSSIAALFLATGTAQADNEKWKANFRQCHIRKWFSKNELAAIGWARETEGQTIVIEAEEIPDILKAIRVIEKC
Ga0066388_1002893714	3300005332	Tropical Forest Soil	MKRILLAGVAALFLAKGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIV
Ga0066388_1007041724	3300005332	Tropical Forest Soil	MKYVLLIGIAALLLATGATHAESEKWEASFRQCHIRKWFSKDEL
Ga0066388_1026471573	3300005332	Tropical Forest Soil	MKKLLLTGVAALFLATGTANADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIV
Ga0066388_1029568771	3300005332	Tropical Forest Soil	MKKMLLASVAALFLTPGTAHADSEKWEASFRQCHIRKWFSK*
Ga0066388_1045843441	3300005332	Tropical Forest Soil	MKLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0066388_1062442441	3300005332	Tropical Forest Soil	VKRLFLIGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0066388_1077049971	3300005332	Tropical Forest Soil	MKKALLIGVAALFLAAGAAQADSEKWEASFRQCHIRKWFSKDELANIGWARETEGQTIVI
Ga0066687_106468752	3300005454	Soil	MRKLFLSSIAALFLATGTAQADNEKWKANFRQCHIRKWFSKNELAAIGWARETEGQTIVIEAEEIPDILKAIRVIEK
Ga0066905_1007655821	3300005713	Tropical Forest Soil	MLKLLLAGIAVLFLATGTAHADSEKWEANFRQCHIRKWFSKDELAGIGW
Ga0066905_1008421201	3300005713	Tropical Forest Soil	MNRIFITGIAALFLATGTANADSEKWEASFRQCHIRKWFSKDELAAIGWA
Ga0066903_1002547556	3300005764	Tropical Forest Soil	MTITITRFTVIAVLFLATGTANADSEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIE
Ga0066903_1002808807	3300005764	Tropical Forest Soil	MKKALLAGVAVLFLATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARE
Ga0066903_1006048534	3300005764	Tropical Forest Soil	MKTLFLAGIAALLIATSAAHADSEKWEASFRQCHIRKWFSK
Ga0066903_1038185021	3300005764	Tropical Forest Soil	MKKLLLSGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0066903_1038571123	3300005764	Tropical Forest Soil	MRKLLLGSIAALFLATGAAHADHEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDILKAI
Ga0066903_1051212372	3300005764	Tropical Forest Soil	MKKMLLASVAALFLTPGTAHADSEKWEASFRQCHIRKW
Ga0066903_1056750072	3300005764	Tropical Forest Soil	MKKLLLAGVAALSVLSASAAHADSEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDIL
Ga0066903_1066729871	3300005764	Tropical Forest Soil	MKKLLLAGVSALLMATGTAHADNEKWEASFRQCHISKWF
Ga0066903_1071434751	3300005764	Tropical Forest Soil	MKKLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0066903_1077723941	3300005764	Tropical Forest Soil	MKKLLLAGVSALLMATGTAHADNEKWEASFRQCHISKWFS
Ga0075426_102996964	3300006903	Populus Rhizosphere	AALLLATGTAHADNETWEASFRQCHISKWFTKDELAAIGWALR*
Ga0079219_110394302	3300006954	Agricultural Soil	MKKMLLPSVAALLLATGTAHADNEKWEASFRQCHISKWFSKDELAAIGWARET
Ga0126380_109911871	3300010043	Tropical Forest Soil	MRKMLLGSIAALFLATGTAHAHDEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPD
Ga0126384_117642411	3300010046	Tropical Forest Soil	MKKLLLTGIAALLLATGTAHADSEKWEASFRQCHIRKWFSKDELANIGWARETEGQTIVI
Ga0126382_121072742	3300010047	Tropical Forest Soil	MLLAKYVAALLLATGTVHADNEKWDASLRQCHIRKWLSKDELAAIGWARETEGQTIVIEAEEIPDILK*
Ga0126373_102064691	3300010048	Tropical Forest Soil	MKKALLIGVAALFLAAGAAHADSEKWEASFRQCHI
Ga0126373_124662011	3300010048	Tropical Forest Soil	MKKTLLAGVAVLFLATGTAHADSEKWEASFRQCHIR
Ga0126376_108170893	3300010359	Tropical Forest Soil	MKKALLIGVAALFLAAGAAQADSEKWEASFRQCHIRKWFS
Ga0126372_115939212	3300010360	Tropical Forest Soil	MKKMLLGTIAALFLTTGTAHADTEKWEASFRQCHISKWFSKDELAAIGW
Ga0126378_117232201	3300010361	Tropical Forest Soil	LSDTADAGAVKKALLIGVAVLFLATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWAR
Ga0126378_126992352	3300010361	Tropical Forest Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDILKAIG
Ga0126378_129224152	3300010361	Tropical Forest Soil	MKKALLIGVAALFLAAGAAHADSEKWEASFRQCHIRKWFSKDELANIGWARETEGQTIVIEAEEIPDILKAISVIK
Ga0126379_100226428	3300010366	Tropical Forest Soil	MKKLLLTGVAALFLATGTANADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEA
Ga0126379_100743796	3300010366	Tropical Forest Soil	MKKLLLSGIAAMFLATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEA
Ga0126379_114519781	3300010366	Tropical Forest Soil	MKKLLLSGIAVLFLATGAAHADSEKWEASFRQCHIRKWFSKDELANIGWARETEGQTIVIEAEE
Ga0126379_118342611	3300010366	Tropical Forest Soil	MDGSLQSVKKLLLTSVAALFLATGAAHADSEKWEASFRQCHIRKWFSKDELA
Ga0126379_131220111	3300010366	Tropical Forest Soil	MRKFLATSIAALFLATGAVHADSEKWEASFRQCHIRKWF
Ga0126381_1023195712	3300010376	Tropical Forest Soil	MKKMLLAKCVAALLLATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQ
Ga0126381_1041689482	3300010376	Tropical Forest Soil	MKKLLLTGVAVLFLATGAAHADSEKWEASFRQCHIRKWFSKDELAGIGWARETEGQTIVIEAEEIPDILKAISLIK
Ga0126383_106947341	3300010398	Tropical Forest Soil	MKKALLIGVAALFLAAGAAQADSEKWEASFRQCHIRKWFSKDELANIG
Ga0126383_111083421	3300010398	Tropical Forest Soil	MKKLLLTGIAALLLATGTAHADSEKWEASFRQCHIRKWFSKDELANIGWARETEGQTIVIEAEEIPDI
Ga0126383_112656272	3300010398	Tropical Forest Soil	MKKMLLAKCVAPLLLATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARE
Ga0126383_121647691	3300010398	Tropical Forest Soil	MRKMLLGSIAALFLATGTAHADNEKWEASFRQCHIRKWFSKDE
Ga0126383_122582273	3300010398	Tropical Forest Soil	MKKLLLSGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEA
Ga0134123_131672022	3300010403	Terrestrial Soil	MKKMLLASAAALLLATGTAHADNEKWEASFRQCHIRKWFSKDELAEIGWAHETE
Ga0137382_108784361	3300012200	Vadose Zone Soil	MKELLLAGAAALFLATGTAHADSEKWEASFRQCHIRKWFSKDE
Ga0137379_113329912	3300012209	Vadose Zone Soil	LLVGAAAVFLVTGTAHADSEKWEASFRQCHIRKWFSKDELV*
Ga0137377_105486582	3300012211	Vadose Zone Soil	MRKLFLSSIAALFLATGTAQADNEKWEANFRQCHIRKWFSKNELAAIGWARETEGQTIVIEAEEIPDILKAIRVIEKCK
Ga0137359_116569801	3300012923	Vadose Zone Soil	MKKMLLAKCVAALLLATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIE
Ga0126369_131189871	3300012971	Tropical Forest Soil	VKRALLTGVAALLMATGTAHADSEKWEASFRQCHIRKWFSKDELA
Ga0182036_117995761	3300016270	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0182041_121094841	3300016294	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGW
Ga0182035_103536083	3300016341	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEG
Ga0182035_118879622	3300016341	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAE
Ga0182040_104525821	3300016387	Soil	MKKLLLTSIAALFLATGAAHADSEKWKASFRQCHIRKWFSKLAGIGWARETEGQTIVIEAEEIPDILKAIRVIKK
Ga0210408_104992253	3300021178	Soil	MKKMLLLPSVAALLLATGTAHADNEKWEASFRQCHIHKWFSKDELA
Ga0126371_109679673	3300021560	Tropical Forest Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAA
Ga0126371_133658812	3300021560	Tropical Forest Soil	MKKLLLAGVAALFLATGAANADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQ
Ga0209647_13457882	3300026319	Grasslands Soil	MRQIFLVGVATLLLAGTAHADSEKWEASFRQCHIRKWFSKDELAGIGWAREAEGQTIVIEAEEIPDILKAISVIKKCKAF
Ga0209161_100189651	3300026548	Soil	MRKLFLSSIAALFLATGTAQADNEKWKANFRQCHIRKWFSKNELAAIGWARETEGQTIVIEAEEIPDILKAIRVIEKCKAFYK
Ga0307303_100801431	3300028713	Soil	MKKLLLFSISALLLALPSVANADQEKWEGSFRQCHISKWFSKDELAEIGWQRDSGQTIVIKQDEIGDLEKALQ
Ga0318541_100363021	3300031545	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWA
Ga0318541_104813081	3300031545	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWA
Ga0318528_100276049	3300031561	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKD
Ga0318573_102535831	3300031564	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVI
Ga0310915_101131171	3300031573	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAI
Ga0318561_101672161	3300031679	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELA
Ga0318574_105441571	3300031680	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTI
Ga0318572_100427371	3300031681	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDEL
Ga0318560_103562591	3300031682	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIG
Ga0306917_111142771	3300031719	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWF
Ga0318493_101491031	3300031723	Soil	MKKLLLTGVAVLLLATGTAHADSEKWEASFRQCHIRKWFSKDELAAIG
Ga0318501_100300071	3300031736	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELGAIGWARETEGQTIVIEAEEIP
Ga0306918_109478361	3300031744	Soil	LRAAKATMKKLLLAGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEPEEIPDILKAIGVIKKC
Ga0318537_100092951	3300031763	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELGAIG
Ga0318509_107508631	3300031768	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWA
Ga0318521_100253031	3300031770	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQT
Ga0318546_104299011	3300031771	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARET
Ga0318576_100649354	3300031796	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDE
Ga0318568_100372671	3300031819	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVI
Ga0318568_105061551	3300031819	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVI
Ga0318568_105218852	3300031819	Soil	MKKLLLTGVAVLLLATGTAHADSEKWEASFRQCHIRKWFSKDELAAIGWARETEGQ
Ga0310917_100434829	3300031833	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWAR
Ga0310917_100711086	3300031833	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQT
Ga0310917_104098531	3300031833	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAI
Ga0310917_106084462	3300031833	Soil	MKKLLLTSIAALFLATGAAHADSEKWKASFRQCHIRKWFSKLAGIGWARETEGQTIVIEAEEIPYILKAIRVIKKSQMAFMRLLTDKVRCATSV
Ga0306919_111820881	3300031879	Soil	MQSLWILRAAKATMKKLLLAGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVI
Ga0306925_107571621	3300031890	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKD
Ga0318551_100669876	3300031896	Soil	MKTLLLAGIAALLMATGTAHADNEKWEASFRQCHIRKWFSK
Ga0318551_103211431	3300031896	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDE
Ga0310913_100420401	3300031945	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDEL
Ga0310913_106290732	3300031945	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGW
Ga0310910_101182064	3300031946	Soil	MKKLLLVGIAALLMATGTAHADNEKWEASFRQCHIRKWF
Ga0310910_108264291	3300031946	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDEL
Ga0310909_105725922	3300031947	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFS
Ga0310909_110428712	3300031947	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIGWARET
Ga0318559_104507602	3300032039	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELA
Ga0318570_102084691	3300032054	Soil	MKKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRKWFSKDELAAIG
Ga0318504_104764702	3300032063	Soil	MKLLLAGIAALLMATGAAHADNEKWEASFRQCHIRK
Ga0318553_100244561	3300032068	Soil	VKRALLTGVAALLMATGTAHADNEKWEASFRQCHIRKWFSKDELAAIGWARETEGQTIVIEAEEIPDILKAIGVI
Ga0306924_111572801	3300032076	Soil	MKKLLLTSIAALFLATGAAHADSEKWKASFRQCHIRKWFFKLAGIGWARETEGQTIVIEAEEIPDILKA
Ga0306920_1006742382	3300032261	Soil	MKKLLLTSIAALFLATGAAHADSEKWKASFRQCHIRKWFFKLAGIGWARETEGQTIVIEAEEIPDILKAIRVIKKSQMAFMRLLTDKVRCATSV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089968

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences