Metagenome / Metatranscriptome Family F089617

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089617
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	49 residues
Representative Sequence	EDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Number of Associated Samples	56
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (80.556 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (90.741 % of family members)
Environment Ontology (ENVO)	Unclassified (90.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066377_100756993 2Ga0182078_101565431 3Ga0182082_11093501 4Ga0182082_13415973 5Ga0181565_102298561 6Ga0181565_103256774 7Ga0181565_105845561 8Ga0181565_106005753 9Ga0181565_106256561 10Ga0181565_107128862 11Ga0181584_104868511 12Ga0181584_105279693 13Ga0181584_105962231 14Ga0181577_1001384923 15Ga0181577_104110993 16Ga0181577_105401771 17Ga0181577_105750591 18Ga0181577_107330841 19Ga0181583_102891481 20Ga0181583_103617954 21Ga0181583_104763701 22Ga0181583_105467471 23Ga0181580_108084991 24Ga0181580_109315981 25Ga0181571_105338901 26Ga0181571_105762961 27Ga0181571_105916341 28Ga0181582_104714171 29Ga0181582_105511661 30Ga0181582_107085381 31Ga0181582_108944882 32Ga0181581_105738833 33Ga0181581_109568711 34Ga0181590_105549061 35Ga0181590_106915011 36Ga0181590_110293531 37Ga0181587_106673803 38Ga0181585_106487013 39Ga0181576_100184071 40Ga0181576_103898022 41Ga0181569_100899127 42Ga0181569_103349121 43Ga0181569_105904592 44Ga0181579_104692672 45Ga0181558_100889176 46Ga0181567_105950953 47Ga0181567_106404982 48Ga0181593_105000324 49Ga0181593_108171811 50Ga0181593_110265922 51Ga0181591_103523094 52Ga0182066_10397595 53Ga0182059_10311492 54Ga0181595_102253403 55Ga0181594_102752723 56Ga0181594_104340801 57Ga0181574_106130731 58Ga0181588_102376353 59Ga0181588_103172882 60Ga0181578_102981142 61Ga0181570_1002998110 62Ga0181570_100926876 63Ga0213867_11664023 64Ga0213858_103763521 65Ga0213858_104360152 66Ga0213859_100814271 67Ga0213859_102918923 68Ga0213859_102933003 69Ga0213860_102045513 70Ga0213864_103458031 71Ga0222719_105519121 72Ga0255756_12220442 73Ga0255767_11964734 74Ga0255767_12344643 75Ga0255752_103415821 76Ga0255781_101850561 77Ga0255781_103077292 78Ga0255770_102411611 79Ga0255770_102969841 80Ga0255770_104679023 81Ga0255764_101838221 82Ga0255778_103133343 83Ga0255778_103506593 84Ga0255778_104009382 85Ga0255774_100988255 86Ga0255774_103540713 87Ga0255782_102147144 88Ga0255782_102821982 89Ga0255782_103147523 90Ga0255743_100149401 91Ga0255743_106011341 92Ga0255760_103852083 93Ga0255760_104231312 94Ga0255751_102883311 95Ga0255757_101731701 96Ga0255757_103818592 97Ga0255762_100494789 98Ga0255761_103676012 99Ga0255761_103845262 100Ga0255766_102547904 101Ga0255766_103453323 102Ga0255776_106137982 103Ga0255777_100129801 104Ga0255777_102065775 105Ga0255772_103530781 106Ga0255759_1000046169 107Ga0255759_104348853 108Ga0255768_102643401
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066377_100756993 2Ga0182078_101565431 3Ga0182082_11093501 4Ga0181565_105845561 5Ga0181565_106005753 6Ga0181577_1001384923 7Ga0181571_105338901 8Ga0181579_104692672 9Ga0255756_12220442
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82. 1Ga0066377_100756993 2Ga0182078_101565431 3Ga0182082_11093501 4Ga0181565_105845561 5Ga0181565_106005753 6Ga0181577_1001384923 7Ga0181571_105338901 8Ga0181579_104692672 9Ga0255756_12220442
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 48.94% Coil/Unstructured: 51.06%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF09953	DUF2187	1.85
PF14090	HTH_39	0.93
PF05050	Methyltransf_21	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	19.44 %
Unclassified	root	N/A	80.56 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	11.11 %
Unclassified	root	N/A	80.56 %
Viruses	superkingdom	All Organisms → Viruses	8.33 %

Name	Rank	Taxonomy	Distribution
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	8.33 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.78 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %
Unclassified	root	N/A	80.56 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	8.33 %

Name	Rank	Taxonomy	Distribution
Cellvibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales	0.93 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	8.33 %
Porticoccaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	8.33 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %
unclassified Porticoccaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	8.33 %
Porticoccaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	0.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.33 %
Unclassified	root	N/A	80.56 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005934\|Ga0066377_10075699	Not Available	987	Open in IMG/M
3300016747\|Ga0182078_10156543	Not Available	1138	Open in IMG/M
3300016771\|Ga0182082_1109350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → unclassified Porticoccaceae → Porticoccaceae bacterium	1033	Open in IMG/M
3300016771\|Ga0182082_1341597	Not Available	796	Open in IMG/M
3300017818\|Ga0181565_10229856	Not Available	1265	Open in IMG/M
3300017818\|Ga0181565_10325677	Not Available	1027	Open in IMG/M
3300017818\|Ga0181565_10584556	Not Available	718	Open in IMG/M
3300017818\|Ga0181565_10600575	Not Available	706	Open in IMG/M
3300017818\|Ga0181565_10625656	Not Available	688	Open in IMG/M
3300017818\|Ga0181565_10712886	Not Available	636	Open in IMG/M

Showing 1 to 10 of 107 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	7.41%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	90.74%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	90.74%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	7.41%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.93%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.93%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	90.74%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	7.41%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005934	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B	Environmental	Open in IMG/M
3300016747	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071409BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M

Showing 1 to 10 of 56 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066377_100756993	3300005934	Marine	FICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG*
Ga0182078_101565431	3300016747	Salt Marsh	VLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0182082_11093501	3300016771	Salt Marsh	GNESDRRCYGFAVDVYKAEEDDGSFSFWITEEDFEKIG
Ga0182082_13415973	3300016771	Salt Marsh	VDVLEAEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0181565_102298561	3300017818	Salt Marsh	TSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0181565_103256774	3300017818	Salt Marsh	FMCGNESDRRCYGFAVDVYKAEEDDGSFSFWITEEDFEKIG
Ga0181565_105845561	3300017818	Salt Marsh	NESDRRVYGFTVDVCKAEEADGSFSFWVTNEDYATIG
Ga0181565_106005753	3300017818	Salt Marsh	EEYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181565_106256561	3300017818	Salt Marsh	VLEDEEFGFICGNASDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181565_107128862	3300017818	Salt Marsh	EEYGFMCGNESDRRCYGFTVDVYKAEEADGNFSFWITEEDFEKIG
Ga0181584_104868511	3300017949	Salt Marsh	KDEEFGFICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYGAIG
Ga0181584_105279693	3300017949	Salt Marsh	GNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0181584_105962231	3300017949	Salt Marsh	VEVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181577_1001384923	3300017951	Salt Marsh	DVLEDEEFGFICGNASDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181577_104110993	3300017951	Salt Marsh	WRDNVAVVDVFEDEEFGFICGNASHRRVYGFTVDVYKAEEEDDTFSFWITEEQFEQIG
Ga0181577_105401771	3300017951	Salt Marsh	TSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181577_105750591	3300017951	Salt Marsh	GFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181577_107330841	3300017951	Salt Marsh	EYGFMCGNESDRRCYGFAVDVYKAEEDDGSFSFWITEEAFEKIG
Ga0181583_102891481	3300017952	Salt Marsh	FMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181583_103617954	3300017952	Salt Marsh	GNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181583_104763701	3300017952	Salt Marsh	NESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181583_105467471	3300017952	Salt Marsh	EYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181580_108084991	3300017956	Salt Marsh	KDEEYGFMCGNESDRRCYGFTVDVYKAEEADGNFSFWITEEDFEKIG
Ga0181580_109315981	3300017956	Salt Marsh	VYTVEVLEDETYGFMCGNKTDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181571_105338901	3300017957	Salt Marsh	YGYGTDMWATYYADDEEVWREDVYTEEVYEDATYGFMCGNKTDRRCYGFTVDVYKAKEADGSCSFWVTDEDYATIG
Ga0181571_105762961	3300017957	Salt Marsh	EDEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181571_105916341	3300017957	Salt Marsh	EAEEFGFICGNASDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181582_104714171	3300017958	Salt Marsh	NTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0181582_105511661	3300017958	Salt Marsh	DEEYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181582_107085381	3300017958	Salt Marsh	DVLKDEEYGFMCGNESDRRCYSFTVDVYKAEEADDTFSFWITEEDFEKIG
Ga0181582_108944882	3300017958	Salt Marsh	MCGNESDRRCYGFTVDVYKAEEADGNFSFWITEEDFEKIG
Ga0181581_105738833	3300017962	Salt Marsh	VLEDEEYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181581_109568711	3300017962	Salt Marsh	YDTDMWATYYGADDEEVWREDVYTVEVLEDETYGFMCGNKTDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181590_105549061	3300017967	Salt Marsh	EVWREDVYTVEVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181590_106915011	3300017967	Salt Marsh	TIDVFEDETYGFICGNTSDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0181590_110293531	3300017967	Salt Marsh	GNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181587_106673803	3300017968	Salt Marsh	MCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181585_106487013	3300017969	Salt Marsh	FMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181576_100184071	3300017985	Salt Marsh	AVVDVLEDEEFGFICGNASDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0181576_103898022	3300017985	Salt Marsh	EEWRDNVYTVEVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181569_100899127	3300017986	Salt Marsh	FICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181569_103349121	3300017986	Salt Marsh	WATYYGADDEEVWREDVFTVEVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181569_105904592	3300017986	Salt Marsh	TYGDGDVWRDNVAVVDVLEDEEFGFICGNASDRRVYGFTVDVYKAEEEDDTFSFWITEEQFEQIG
Ga0181579_104692672	3300018039	Salt Marsh	DEEEWREDVYTVEVLEDETYGFMCGNKTDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181558_100889176	3300018417	Salt Marsh	EFYEEWREDVFTIDVFEDETYGFICGNTSDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0181567_105950953	3300018418	Salt Marsh	LEDEEYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEAFEAIG
Ga0181567_106404982	3300018418	Salt Marsh	VLEDEEFGFICGNASDRRVYGFTVDVYKAEEEDDTFSFWITEEQFEQIG
Ga0181593_105000324	3300018423	Salt Marsh	TVEVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181593_108171811	3300018423	Salt Marsh	EEVWREDVYTVDVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATI
Ga0181593_110265922	3300018423	Salt Marsh	DEEVWREDVYTVDVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181591_103523094	3300018424	Salt Marsh	SDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0182066_10397595	3300019262	Salt Marsh	WREDVYTIEVFEDETFGFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0182059_10311492	3300019272	Salt Marsh	EDETYGFICGNTHDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0181595_102253403	3300020053	Salt Marsh	SDRRCYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0181594_102752723	3300020054	Salt Marsh	GFMCGNESDRRCYGFAVDVYKAEEDDGSFSFWITEEDFEKIG
Ga0181594_104340801	3300020054	Salt Marsh	ETYGFICGNAHDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0181574_106130731	3300020056	Salt Marsh	MWATYYGADDEEEWRDNVYTVDVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181588_102376353	3300020168	Salt Marsh	GNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181588_103172882	3300020168	Salt Marsh	VLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0181578_102981142	3300020189	Salt Marsh	GFMCGNESDRRCYGFTVDVYKAEEADGTFSFWITEEDFEKIG
Ga0181570_1002998110	3300020207	Salt Marsh	GFMCGNESDRRCYSFTVDVYKAEEADDTFSFWITEEDFEKIG
Ga0181570_100926876	3300020207	Salt Marsh	NESDRRCYGFAVDVYKAEEDDGSFSFWITEEDFEKIG
Ga0213867_11664023	3300021335	Seawater	GNESDRRCYGFTVDVYKAEEADGNFSFWITAEDEERIG
Ga0213858_103763521	3300021356	Seawater	VFEDETYGFICGNAHDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0213858_104360152	3300021356	Seawater	AVLEDEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0213859_100814271	3300021364	Seawater	TIEVLEDETFGFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0213859_102918923	3300021364	Seawater	MCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0213859_102933003	3300021364	Seawater	AVVDVLEAEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0213860_102045513	3300021368	Seawater	ICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0213864_103458031	3300021379	Seawater	AEFEAYGYGTDMWATYYADDEEVWREDVYTEEVYEDATYGFMCGNKTDRRCYGFTVDVYKAIEADGSCSFWVTDEDYATIG
Ga0222719_105519121	3300021964	Estuarine Water	EVVDVLEAEEFGFICGNASDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255756_12220442	3300022905	Salt Marsh	TDMWATYGEFDEEWREDVFTIDVFEDETYGFICGNAHDRRVYGFTVDVYKAEEADGTYSFWITNEDYATIG
Ga0255767_11964734	3300022914	Salt Marsh	REDVYTVEVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255767_12344643	3300022914	Salt Marsh	AVVDVLEDEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0255752_103415821	3300022929	Salt Marsh	DEEWREDVFTIDVFEDETYGFICGNAHDRRVYGFTVDVYKAEEADGTYSFWITNEDYATI
Ga0255781_101850561	3300022934	Salt Marsh	TYYGADDEEEWRDNVYTVDVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255781_103077292	3300022934	Salt Marsh	YGYGTDMWATYYADDEEVWREDVYTEEVYEDATYGFMCGNKTDRRCYGFTVDVYKAIEADGSCSFWVTDEDYATIG
Ga0255770_102411611	3300022937	Salt Marsh	EEYGFMCGNESDRRCYSFTVDVYKAEEADGNYSFWITEEDFEKIG
Ga0255770_102969841	3300022937	Salt Marsh	SDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255770_104679023	3300022937	Salt Marsh	EDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255764_101838221	3300023081	Salt Marsh	TYYADDEEVWREDVYTVDVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255778_103133343	3300023084	Salt Marsh	DVLEAEEFGFICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255778_103506593	3300023084	Salt Marsh	FICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255778_104009382	3300023084	Salt Marsh	GEFDEEWREDVYTIEVLEDETFGFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255774_100988255	3300023087	Salt Marsh	TYYGADDEEEWREDVYTVDVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255774_103540713	3300023087	Salt Marsh	EFGFICGNASDRRVYGFTVDVYKAEEEDDTFSFWITEEQFEQIG
Ga0255782_102147144	3300023105	Salt Marsh	LEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255782_102821982	3300023105	Salt Marsh	NTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255782_103147523	3300023105	Salt Marsh	FGFICGNASDRRVYGFTVDVYKAEEEDDTFSFWITEEQFEQIG
Ga0255743_100149401	3300023110	Salt Marsh	CGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0255743_106011341	3300023110	Salt Marsh	ESDRRCYGFTVDVYKAEEADGNFSFWITEEDFEKIG
Ga0255760_103852083	3300023115	Salt Marsh	LYMCNTSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255760_104231312	3300023115	Salt Marsh	GFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255751_102883311	3300023116	Salt Marsh	GFICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255757_101731701	3300023117	Salt Marsh	EEVWREDVFTVEVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATI
Ga0255757_103818592	3300023117	Salt Marsh	DEEFGFICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255762_100494789	3300023119	Salt Marsh	DVLEDEEYGFMCGNESDRRCYSFTVDVYKAEEADDTFSFWITEEDFEKIG
Ga0255761_103676012	3300023170	Salt Marsh	DMWATYYADDEEVWREDVYTVDVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255761_103845262	3300023170	Salt Marsh	EDETFGFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255766_102547904	3300023172	Salt Marsh	KAEFEEYGYDTDMWATYYADDEEVWREDVYTVEVLEDETFGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255766_103453323	3300023172	Salt Marsh	KDEEFGFICGNPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255776_106137982	3300023173	Salt Marsh	NPSDRRVYGFTVDVYKAEEADDTFSFWITEEAYEAIG
Ga0255777_100129801	3300023175	Salt Marsh	AYGYDTDMWATYGEFDEEWREDVYTIEVLEDETFGFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255777_102065775	3300023175	Salt Marsh	VAVVDVLEDEEFGFICGNTSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0255772_103530781	3300023176	Salt Marsh	GFICGNESDRRVYGFTVDVYKAEEADGSFSFWVTNEDYATIG
Ga0255759_1000046169	3300023178	Salt Marsh	TSDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0255759_104348853	3300023178	Salt Marsh	CGNASDRRVYGFTVDVYKAEEADDTFSFWITEEQFEQIG
Ga0255768_102643401	3300023180	Salt Marsh	DNVYTVEVLEDETYGFMCGNTSDRRCYGFTVDVYKAEEADGSFSFWVTNEDYATIG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089617

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences