Metagenome Family F089594

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089594
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	40 residues
Representative Sequence	VGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Number of Associated Samples	34
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	39.42 %
% of genes near scaffold ends (potentially truncated)	66.97 %
% of genes from short scaffolds (< 2000 bps)	58.72 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (67.890 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water (93.578 % of family members)
Environment Ontology (ENVO)	Unclassified (93.578 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (93.578 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 62.16% β-sheet: 0.00% Coil/Unstructured: 37.84%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00078	RVT_1	11.01
PF03810	IBN_N	1.83
PF00075	RNase_H	1.83
PF03015	Sterile	0.92
PF05637	Glyco_transf_34	0.92
PF00463	ICL	0.92
PF08490	DUF1744	0.92
PF00849	PseudoU_synth_2	0.92
PF00069	Pkinase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	0.92
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	0.92
COG2224	Isocitrate lyase	Energy production and conversion [C]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
All Organisms	root	All Organisms	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
cellular organisms	root	All Organisms → cellular organisms	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	32.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	30.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Chlorophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
CS clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Chlamydomonadales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Dunaliellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae	23.85 %
Chlamydomonadaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae	0.92 %
Volvocaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Dunaliella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella	23.85 %
Chlamydomonas	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas	0.92 %
Volvox	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	67.89 %
Dunaliella viridis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	19.27 %
Dunaliella tertiolecta	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	4.59 %
Chlamydomonas leiostraca	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas leiostraca	0.92 %
Volvox reticuliferus	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox → Volvox reticuliferus	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918027\|contig16338	Not Available	623	Open in IMG/M
2140918027\|contig18053	Not Available	569	Open in IMG/M
3300005928\|Ga0075105_1022415	Not Available	707	Open in IMG/M
3300012025\|Ga0136571_122005	Not Available	588	Open in IMG/M
3300012027\|Ga0136609_1031368	Not Available	506	Open in IMG/M
3300012028\|Ga0136584_1011691	Not Available	888	Open in IMG/M
3300028411\|Ga0306911_111991	Not Available	618	Open in IMG/M
3300031209\|Ga0307955_1055610	Not Available	736	Open in IMG/M
3300031210\|Ga0307964_1030431	Not Available	1028	Open in IMG/M
3300031210\|Ga0307964_1055271	Not Available	745	Open in IMG/M
3300031210\|Ga0307964_1080219	Not Available	607	Open in IMG/M
3300031211\|Ga0307974_1000509	All Organisms → cellular organisms → Eukaryota	23995	Open in IMG/M
3300031211\|Ga0307974_1006139	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	8457	Open in IMG/M
3300031211\|Ga0307974_1015878	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	4654	Open in IMG/M
3300031211\|Ga0307974_1021523	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3711	Open in IMG/M
3300031211\|Ga0307974_1021528	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3710	Open in IMG/M
3300031211\|Ga0307974_1021819	Not Available	3675	Open in IMG/M
3300031211\|Ga0307974_1031680	Not Available	2772	Open in IMG/M
3300031212\|Ga0307959_1103526	Not Available	732	Open in IMG/M
3300031213\|Ga0307937_1088658	Not Available	642	Open in IMG/M
3300031213\|Ga0307937_1099542	Not Available	599	Open in IMG/M
3300031221\|Ga0307948_1000517	All Organisms → cellular organisms → Eukaryota → Viridiplantae	26622	Open in IMG/M
3300031221\|Ga0307948_1013174	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	5626	Open in IMG/M
3300031221\|Ga0307948_1016434	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	4818	Open in IMG/M
3300031221\|Ga0307948_1119408	Not Available	842	Open in IMG/M
3300031221\|Ga0307948_1126294	Not Available	797	Open in IMG/M
3300031221\|Ga0307948_1191696	Not Available	543	Open in IMG/M
3300031222\|Ga0307972_1001414	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	12686	Open in IMG/M
3300031222\|Ga0307972_1002224	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	10249	Open in IMG/M
3300031222\|Ga0307972_1011010	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5064	Open in IMG/M
3300031222\|Ga0307972_1021998	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3593	Open in IMG/M
3300031222\|Ga0307972_1024141	Not Available	3415	Open in IMG/M
3300031222\|Ga0307972_1046905	Not Available	2246	Open in IMG/M
3300031222\|Ga0307972_1108721	Not Available	1103	Open in IMG/M
3300031222\|Ga0307972_1146514	Not Available	806	Open in IMG/M
3300031222\|Ga0307972_1180427	Not Available	639	Open in IMG/M
3300031225\|Ga0307942_1001943	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	16733	Open in IMG/M
3300031225\|Ga0307942_1002053	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	16273	Open in IMG/M
3300031225\|Ga0307942_1018543	Not Available	4195	Open in IMG/M
3300031225\|Ga0307942_1032913	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2661	Open in IMG/M
3300031333\|Ga0307936_1173364	Not Available	563	Open in IMG/M
3300031333\|Ga0307936_1195626	Not Available	514	Open in IMG/M
3300031334\|Ga0307969_1067278	Not Available	870	Open in IMG/M
3300031334\|Ga0307969_1127503	Not Available	577	Open in IMG/M
3300031334\|Ga0307969_1138487	Not Available	544	Open in IMG/M
3300031335\|Ga0307951_1007335	Not Available	6934	Open in IMG/M
3300031335\|Ga0307951_1021630	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3425	Open in IMG/M
3300031335\|Ga0307951_1029400	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2644	Open in IMG/M
3300031335\|Ga0307951_1083555	Not Available	926	Open in IMG/M
3300031339\|Ga0307932_1117626	Not Available	692	Open in IMG/M
3300031339\|Ga0307932_1163922	Not Available	569	Open in IMG/M
3300031343\|Ga0307952_1026523	Not Available	2586	Open in IMG/M
3300031343\|Ga0307952_1062304	Not Available	1385	Open in IMG/M
3300031343\|Ga0307952_1066447	Not Available	1312	Open in IMG/M
3300031343\|Ga0307952_1095168	Not Available	936	Open in IMG/M
3300031382\|Ga0307971_1063493	Not Available	1190	Open in IMG/M
3300031382\|Ga0307971_1184740	Not Available	583	Open in IMG/M
3300031382\|Ga0307971_1200842	Not Available	551	Open in IMG/M
3300031387\|Ga0307947_1001719	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Chlamydomonadaceae → Chlamydomonas → Chlamydomonas leiostraca	17445	Open in IMG/M
3300031387\|Ga0307947_1001947	All Organisms → cellular organisms → Eukaryota → Viridiplantae	16493	Open in IMG/M
3300031387\|Ga0307947_1005530	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	9700	Open in IMG/M
3300031387\|Ga0307947_1015755	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	4301	Open in IMG/M
3300031387\|Ga0307947_1020260	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3382	Open in IMG/M
3300031387\|Ga0307947_1023186	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2964	Open in IMG/M
3300031391\|Ga0307954_1043423	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Volvox → Volvox reticuliferus	1664	Open in IMG/M
3300031391\|Ga0307954_1094016	Not Available	875	Open in IMG/M
3300031391\|Ga0307954_1097438	Not Available	844	Open in IMG/M
3300031392\|Ga0307975_1009218	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3627	Open in IMG/M
3300031392\|Ga0307975_1018024	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2639	Open in IMG/M
3300031392\|Ga0307975_1062923	Not Available	1420	Open in IMG/M
3300031392\|Ga0307975_1090710	Not Available	1138	Open in IMG/M
3300031392\|Ga0307975_1123267	Not Available	919	Open in IMG/M
3300031392\|Ga0307975_1241091	Not Available	512	Open in IMG/M
3300031393\|Ga0307967_1010323	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5160	Open in IMG/M
3300031393\|Ga0307967_1018074	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	3781	Open in IMG/M
3300031393\|Ga0307967_1047399	Not Available	1981	Open in IMG/M
3300031393\|Ga0307967_1057937	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1691	Open in IMG/M
3300031393\|Ga0307967_1199270	Not Available	561	Open in IMG/M
3300031394\|Ga0307963_1166329	Not Available	565	Open in IMG/M
3300031394\|Ga0307963_1182437	Not Available	519	Open in IMG/M
3300031395\|Ga0307957_1016352	Not Available	1767	Open in IMG/M
3300031395\|Ga0307957_1118289	Not Available	541	Open in IMG/M
3300031396\|Ga0307944_1126517	Not Available	657	Open in IMG/M
3300031396\|Ga0307944_1172881	Not Available	528	Open in IMG/M
3300031397\|Ga0307960_1004763	All Organisms → cellular organisms → Eukaryota	8370	Open in IMG/M
3300031397\|Ga0307960_1060783	Not Available	1433	Open in IMG/M
3300031397\|Ga0307960_1102714	Not Available	894	Open in IMG/M
3300031399\|Ga0307968_1001945	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	17048	Open in IMG/M
3300031399\|Ga0307968_1002087	All Organisms → cellular organisms → Eukaryota → Viridiplantae	16502	Open in IMG/M
3300031399\|Ga0307968_1012644	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5512	Open in IMG/M
3300031399\|Ga0307968_1042052	Not Available	1787	Open in IMG/M
3300031404\|Ga0307945_1006929	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	8911	Open in IMG/M
3300031404\|Ga0307945_1031084	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2681	Open in IMG/M
3300031600\|Ga0307930_1092443	Not Available	1005	Open in IMG/M
3300031600\|Ga0307930_1152716	Not Available	706	Open in IMG/M
3300031607\|Ga0307966_1189816	Not Available	856	Open in IMG/M
3300031607\|Ga0307966_1264903	Not Available	641	Open in IMG/M
3300031607\|Ga0307966_1355955	Not Available	502	Open in IMG/M
3300031684\|Ga0307946_1110762	Not Available	751	Open in IMG/M
3300031684\|Ga0307946_1134004	Not Available	621	Open in IMG/M
3300031704\|Ga0307943_1078380	Not Available	1236	Open in IMG/M
3300031704\|Ga0307943_1112710	Not Available	916	Open in IMG/M
3300031704\|Ga0307943_1190873	Not Available	563	Open in IMG/M
3300031704\|Ga0307943_1202860	Not Available	531	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	100.00%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	98.17%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	1.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	98.17%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	1.83%

Habitat	Taxonomy	Distribution
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	93.58%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	4.59%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	1.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918027	Hypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool	Environmental	Open in IMG/M
3300005928	Saline lake microbial communities from Deep Lake, Antarctica - Antarctic Deep Lake Metagenome 02WF5	Environmental	Open in IMG/M
3300012025	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #81	Environmental	Open in IMG/M
3300012027	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2	Environmental	Open in IMG/M
3300012028	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #401	Environmental	Open in IMG/M
3300028411	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF #695 (v2)	Environmental	Open in IMG/M
3300031209	Saline water microbial communities from Organic Lake, Antarctica - #439	Environmental	Open in IMG/M
3300031210	Saline water microbial communities from Organic Lake, Antarctica - #596	Environmental	Open in IMG/M
3300031211	Saline water microbial communities from Organic Lake, Antarctica - #784	Environmental	Open in IMG/M
3300031212	Saline water microbial communities from Organic Lake, Antarctica - #494	Environmental	Open in IMG/M
3300031213	Saline water microbial communities from Organic Lake, Antarctica - #3	Environmental	Open in IMG/M
3300031221	Saline water microbial communities from Organic Lake, Antarctica - #280	Environmental	Open in IMG/M
3300031222	Saline water microbial communities from Organic Lake, Antarctica - #780	Environmental	Open in IMG/M
3300031225	Saline water microbial communities from Organic Lake, Antarctica - #175	Environmental	Open in IMG/M
3300031333	Saline water microbial communities from Organic Lake, Antarctica - #1	Environmental	Open in IMG/M
3300031334	Saline water microbial communities from Organic Lake, Antarctica - #710	Environmental	Open in IMG/M
3300031335	Saline water microbial communities from Organic Lake, Antarctica - #374	Environmental	Open in IMG/M
3300031339	Saline water microbial communities from Organic Lake, Antarctica - #48	Environmental	Open in IMG/M
3300031343	Saline water microbial communities from Organic Lake, Antarctica - #376	Environmental	Open in IMG/M
3300031382	Saline water microbial communities from Organic Lake, Antarctica - #714	Environmental	Open in IMG/M
3300031387	Saline water microbial communities from Organic Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031391	Saline water microbial communities from Organic Lake, Antarctica - #437	Environmental	Open in IMG/M
3300031392	Saline water microbial communities from Organic Lake, Antarctica - #917	Environmental	Open in IMG/M
3300031393	Saline water microbial communities from Organic Lake, Antarctica - #648	Environmental	Open in IMG/M
3300031394	Saline water microbial communities from Organic Lake, Antarctica - #594	Environmental	Open in IMG/M
3300031395	Saline water microbial communities from Organic Lake, Antarctica - #490	Environmental	Open in IMG/M
3300031396	Saline water microbial communities from Organic Lake, Antarctica - #179	Environmental	Open in IMG/M
3300031397	Saline water microbial communities from Organic Lake, Antarctica - #542	Environmental	Open in IMG/M
3300031399	Saline water microbial communities from Organic Lake, Antarctica - #650	Environmental	Open in IMG/M
3300031404	Saline water microbial communities from Organic Lake, Antarctica - #228	Environmental	Open in IMG/M
3300031600	Saline water microbial communities from Organic Lake, Antarctica - #46	Environmental	Open in IMG/M
3300031607	Saline water microbial communities from Organic Lake, Antarctica - #646	Environmental	Open in IMG/M
3300031684	Saline water microbial communities from Organic Lake, Antarctica - #230	Environmental	Open in IMG/M
3300031704	Saline water microbial communities from Organic Lake, Antarctica - #177	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ADL36m2_01288790	2140918027	Hypersaline	VYAVHALLVWSWERVASWLVGAGSERQVIAAVCGSGVGDVLIESWFLFVWLNTLCE
ADL36m2_02256190	2140918027	Hypersaline	SWERVASWSVGAGSERQVIAAVCGSGIGDVLMELWFLFVWLDTLCE
Ga0075105_10224151	3300005928	Saline Lake	ACWSWERVASWLVGAGSERQVIAAVCGSGIGDVLMEFWFLFVWLDTLCE*
Ga0136571_1220052	3300012025	Saline Lake	VGVGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE*
Ga0136609_10313682	3300012027	Saline Lake	FVCWSWERVASWLVGAGSERQVIAVVCGSGIGDLLLELWFLFVWLDTLCE*
Ga0136584_10116912	3300012028	Saline Lake	WLVAAGSERQVIAVVCGSGIGDVLIKLWFLCNWLDALCE*
Ga0306911_1119911	3300028411	Saline Lake	VGAGSERQVTAVVYGSGIGDVLIELWLLFVWLDTL
Ga0307955_10556102	3300031209	Saline Water	LVGVGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307964_10304313	3300031210	Saline Water	LGAGSERQVIAVVCGSGVGDVLIELWLFCVWLNTLCE
Ga0307964_10552713	3300031210	Saline Water	AGSERQVVAVVCGSGIDDVLIELWFLFVWLDTLCE
Ga0307964_10802191	3300031210	Saline Water	VVGLFVGAGSERRVIAVECGSGIGDVLIELWFLVVWLDTLCE
Ga0307974_100050924	3300031211	Saline Water	VGAGSEKQVIAVACGSGIGDVLIESWFLFVWFDKLSK
Ga0307974_10061392	3300031211	Saline Water	VASWLVGAGPERQVIAAVCGSGIGDVRMELWFLFVWLDTLCE
Ga0307974_10158786	3300031211	Saline Water	VVHGGCGEGVGAGSERKVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307974_10215231	3300031211	Saline Water	RVASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCK
Ga0307974_10215285	3300031211	Saline Water	VANWLVGAGSERQVIAVACGSDIGDVLIELSFLFVWLETLCE
Ga0307974_10218192	3300031211	Saline Water	VASWLVAAGSESQVIAVVCGNDIGDVLIELWFLFVWLDTLCE
Ga0307974_10316807	3300031211	Saline Water	VASWLVGAGSERQVIAVVCGSGIGDVPIELWIPFVWLDTLCE
Ga0307974_12131091	3300031211	Saline Water	CWSWERVASWLMDAGSERQVIIAVVCGSGIGDVLIELWFLFVRLDTLCE
Ga0307959_11035262	3300031212	Saline Water	ACWSWERVASWLVGAGSQRQVVAVVCGSDIGDVLIELWFLFVWLDTLCE
Ga0307937_10886581	3300031213	Saline Water	VGAGSERQIIAVVCGSGIGDVLIELWFLFVWFDTLC
Ga0307937_10995421	3300031213	Saline Water	VGVGSERQVIAVVCGSGIGDVLIELWFLFIWLDTFCEW
Ga0307948_100051742	3300031221	Saline Water	VASWLVGAGSERQVIIAVVCGSGIGDVLIELWFLFVWMVTLCE
Ga0307948_10131741	3300031221	Saline Water	ASWLVGAGSERQVVAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307948_10164345	3300031221	Saline Water	VGAGSERQVVAAVCGSGIGDALIELWFLFVWLDTLCE
Ga0307948_11194082	3300031221	Saline Water	RVASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307948_11262941	3300031221	Saline Water	ASWLVGAGSERQVIAAVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307948_11916961	3300031221	Saline Water	ASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307972_100141414	3300031222	Saline Water	VGAGSERQVIAVACGSGIGDVLIELWFFFVWLDTLCE
Ga0307972_100222421	3300031222	Saline Water	ASWSVGAGSERQVIAAVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307972_10110101	3300031222	Saline Water	SWLVGAVSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307972_102199810	3300031222	Saline Water	VASWLVGAGSERQVIAVVCGSGIGDVLIELYFLFVWLDTLCE
Ga0307972_10241414	3300031222	Saline Water	SSWLVGAGSEKQVIAVACGSGIGDVLIESWFLFVWFDKLSK
Ga0307972_10469053	3300031222	Saline Water	VGAGSERQVIAVVCGSGIGDLLLELWFLFVWLDTLCE
Ga0307972_11087211	3300031222	Saline Water	VGAGSERQVIAVVCGSGICDVLTELWFLFVGLDTLCE
Ga0307972_11465141	3300031222	Saline Water	FACWSWERVAGWLVGAGSQRQVVAVVCGSDIGDVLIELWFLFVWLDTLCE
Ga0307972_11804271	3300031222	Saline Water	VGAVSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307942_100194313	3300031225	Saline Water	VGAGSERQVIAVVCGNGIGDVLIELWFLFVWLDTLCE
Ga0307942_10020531	3300031225	Saline Water	VASWLVGAGSERQVIAVVCGSGIGDVLIESWFLFVWLDTLCE
Ga0307942_10185436	3300031225	Saline Water	VGAGSERQVIAVVCGSGIGDVPIELWIPFVWLDTLCE
Ga0307942_10329133	3300031225	Saline Water	VGAGSERRVIAVVCGSGNGDVLIELWFFVVWLDTLCE
Ga0307936_11733641	3300031333	Saline Water	GAGSEKQVIAVVCGGGIGDVLIELWFHFVWLDTLCE
Ga0307936_11956261	3300031333	Saline Water	LVGAGSERQVIAVICGSGIGDVLIELWFLFVWLDTLCE
Ga0307969_10672782	3300031334	Saline Water	VGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTL
Ga0307969_11275031	3300031334	Saline Water	VGAGSERQVIAVVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307969_11384872	3300031334	Saline Water	VGAGSERQVIAVACGSGIGDVLIELWFLIVWLDAL
Ga0307951_10073359	3300031335	Saline Water	SWLVGAGSERQIVAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307951_10216301	3300031335	Saline Water	GAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCK
Ga0307951_10294001	3300031335	Saline Water	VGVGSERQVIAVVCGSGIGDVLIELWFLFVWLVTLCEW
Ga0307951_10369383	3300031335	Saline Water	ACWSWERVASWLVGAGSERQVIAAVCGSGIGDVLMEFWFLFVWLDTLCE
Ga0307951_10835551	3300031335	Saline Water	ASWLVAAGSERQVIAVVCGSGVGDVLIELWFLFVWLDTLCA
Ga0307932_11176262	3300031339	Saline Water	VGAGSERQVIAVACGSGIGDVLIELWFLFVWLDTLCE
Ga0307932_11639221	3300031339	Saline Water	SWLVGAGSERQVIAVVCGSGIGNVLIELWFLLVWLDTLCE
Ga0307952_10265236	3300031343	Saline Water	GAGSERQVVAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307952_10623043	3300031343	Saline Water	SWLAGAGSERQVIAVVCGSGIGDVLIELWFLFVCLDTLCE
Ga0307952_10664471	3300031343	Saline Water	ASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFAWLDTLCE
Ga0307952_10951681	3300031343	Saline Water	LVGAGSERQVIAAVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307952_11447921	3300031343	Saline Water	WSWERVASWLVGAGSEKQVIAVVCGSGIGNVLMELWFLFVWLDILCE
Ga0307971_10634932	3300031382	Saline Water	NWLVGAGSERKVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307971_11847401	3300031382	Saline Water	RVASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTL
Ga0307971_12008421	3300031382	Saline Water	VGAGSERQVIIAVVCGSGIGDVLIELWFLFDWLDT
Ga0307947_100171924	3300031387	Saline Water	CWSWERVTSWLVGAGSERQIIAVVCGSGIGDVLIELWFLFVWSDTLCE
Ga0307947_100194729	3300031387	Saline Water	GAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307947_100553014	3300031387	Saline Water	VGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307947_10157551	3300031387	Saline Water	VGAGSERQVIAVVCGSGIGNVLIELWFLLVWLDTLCE
Ga0307947_10202609	3300031387	Saline Water	SWERVASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCK
Ga0307947_10231863	3300031387	Saline Water	VGAGSERQVTAVVYGSGIGDVLIELWLLFVWLDTLC
Ga0307954_10434232	3300031391	Saline Water	VGAGSERQVIAVVYGSGIGDVLIELWFLFVRLDTLCE
Ga0307954_10940162	3300031391	Saline Water	VGAGSERQVIAVVCGSDIGDVLIVLWFLFVWLDTLCE
Ga0307954_10974381	3300031391	Saline Water	VWEGVASWLVCAGSERQVIAVVCGSGVGDVLIELWFLFIWLDTLCE
Ga0307975_10092186	3300031392	Saline Water	VGVRPERQVIAVDCGSGIGDALLELWFLVVWCVGYPL
Ga0307975_10180244	3300031392	Saline Water	VCAGSERQVIAVVCGSGVGDVLIELWFLFIWLDTLCE
Ga0307975_10629234	3300031392	Saline Water	ERVASWLVGAGSERQVIAVVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307975_10907102	3300031392	Saline Water	VGAGSERQVIAVVCGSGIGDVLIIELWFLFVWLDTLCE
Ga0307975_11232671	3300031392	Saline Water	AGSERQVIAVVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307975_12410911	3300031392	Saline Water	VGAGSERQVIAVVCGSDIGDVLIVLWFLFVWLDTLC
Ga0307967_10103235	3300031393	Saline Water	VGVGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307967_10180746	3300031393	Saline Water	VASWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTL
Ga0307967_10473996	3300031393	Saline Water	SWERVASWLVGAGSERQVIAVVCGSGIGDVLIELYFLFVWLDTLCE
Ga0307967_10579374	3300031393	Saline Water	NWLVGAGSERQVIAVVCGSGVGDVLIELWFLFVWLDTLCE
Ga0307967_11992701	3300031393	Saline Water	GCGEGVGAGSERKVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307963_11663291	3300031394	Saline Water	WLVGAGPERQAIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307963_11824372	3300031394	Saline Water	VGAGSERQVIAVVCGSGIGDVLIESWFLFVWLDTLCE
Ga0307957_10163523	3300031395	Saline Water	AGSERQIIAVVCGSGIGDVLIELWFLFVWFDTLCE
Ga0307957_11182891	3300031395	Saline Water	LVGAGSERQVVAVICGSGIGDVLIELWFLFVWLDTLCE
Ga0307944_10813691	3300031396	Saline Water	RFACWSWERVASWLVGAGSERQVIAVVCGSGIGDVLMELWFLFVWLDTLCE
Ga0307944_11265171	3300031396	Saline Water	AGSERKVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307944_11728811	3300031396	Saline Water	AGSERQVVAVICGSGIGDVLIELWFLFVWLDTLCE
Ga0307960_100476314	3300031397	Saline Water	SWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307960_10607831	3300031397	Saline Water	MDAGSERQVIIAVVCGSGIGDVLIELWFLFVRLDTLCE
Ga0307960_11027141	3300031397	Saline Water	LVGAGSERQVIAVVCGSGIGDVLIELWFLFAWLDTLCE
Ga0307968_100194523	3300031399	Saline Water	VGAGSERQIIIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307968_100208729	3300031399	Saline Water	AGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307968_10126449	3300031399	Saline Water	VAGWLVGAGSERQVIAVVCGNGIGDVLIELWFFFDWLNTLCE
Ga0307968_10420525	3300031399	Saline Water	VANWLVGAGSERKVIAVVCGSGIGDVLIELWFLFVWLDTLCE
Ga0307945_10069292	3300031404	Saline Water	VGAGSERQVIIAVVCGSGIGDVLIESWFLFVWLDTLCE
Ga0307945_10230616	3300031404	Saline Water	WSWERVASWLVGAGSERQVIAAVCGSGIGDVLMEFWFLFVWLDTLCE
Ga0307945_10310844	3300031404	Saline Water	AGWLVGAGSERQVIAVVCGNGIGDVLIELWFFFDWLNTLCE
Ga0307930_10924432	3300031600	Saline Water	VGVGSERQAIAVVCGSGIGDVLIELWFLFLRLDRYPL
Ga0307930_11527162	3300031600	Saline Water	ERVANWLVGAGSERQVIAVVCGSGVGDVLIELWLFCVWLNTLCE
Ga0307966_11898161	3300031607	Saline Water	SWERVASWLVAAGSERQVIAVVCGSGIGDVLIKLWFLCNWLDALCE
Ga0307966_12649031	3300031607	Saline Water	VASWLVGAGSEKQVIAVVCGSGIGNVLMELWFLFVWLDILCE
Ga0307966_13559552	3300031607	Saline Water	SWLVGAGSERQVIAVVCGSGIGDVLIELWFLFVWLDTLCK
Ga0307946_11107622	3300031684	Saline Water	VAAGSESQVIAVVCGNDIGDVLIELWFLFVWLDTLCE
Ga0307946_11340041	3300031684	Saline Water	MGAGSERRVIAVVCGSGIGDVLIESLFLFVWLDTLCE
Ga0307943_10783802	3300031704	Saline Water	VTSWLVGAGSERQIIAVVCGSGIGDVLIELWFLFVWFDTLCE
Ga0307943_11127101	3300031704	Saline Water	WERVASWLVGAGSERQVIAVVCGNGIGDVLIELWFLFVWLDTLCE
Ga0307943_11908731	3300031704	Saline Water	VGAGSERQVIAVVCGSGIGDVLIESWFLFVWLDTH
Ga0307943_12028602	3300031704	Saline Water	WERVASWLMDAGSERQVIIAVVCGSGIGDVLIELWFLFVRLDTLCE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089594

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences