Metagenome / Metatranscriptome Family F089569

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089569
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	51 residues
Representative Sequence	LRTPEEVFARPGLRDKTLRLGSGWRDVEPFGPTREQLLALASA
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.83 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.450 % of family members)
Environment Ontology (ENVO)	Unclassified (33.028 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.789 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.21% β-sheet: 0.00% Coil/Unstructured: 64.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00561	Abhydrolase_1	67.89
PF12697	Abhydrolase_6	7.34
PF00596	Aldolase_II	2.75
PF02909	TetR_C_1	1.83
PF04149	DUF397	0.92
PF00248	Aldo_ket_red	0.92
PF12796	Ank_2	0.92
PF16912	Glu_dehyd_C	0.92
PF00041	fn3	0.92
PF01734	Patatin	0.92
PF08281	Sigma70_r4_2	0.92
PF13183	Fer4_8	0.92
PF01209	Ubie_methyltran	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1309	DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA	Transcription [K]	1.83
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.92
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.92
COG2227	2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase	Coenzyme transport and metabolism [H]	0.92
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.92
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.95 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.45 %
Unclassified	root	N/A	26.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	18.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	4.59 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	3.67 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	2.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	4.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.67 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2.75 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	0.92 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.61 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	4.59 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	3.67 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2.75 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001394\|JGI20191J14862_1035003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300002245\|JGIcombinedJ26739_100286599	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1532	Open in IMG/M
3300002565\|JGI24137J36423_1116830	Not Available	544	Open in IMG/M
3300005186\|Ga0066676_10255789	Not Available	1145	Open in IMG/M
3300005436\|Ga0070713_100006222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8259	Open in IMG/M
3300005439\|Ga0070711_101594211	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300005468\|Ga0070707_101756115	Not Available	588	Open in IMG/M
3300005539\|Ga0068853_102095367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300005577\|Ga0068857_101378404	Not Available	685	Open in IMG/M
3300005578\|Ga0068854_101748761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	569	Open in IMG/M
3300005610\|Ga0070763_10864945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	537	Open in IMG/M
3300006055\|Ga0097691_1072584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1092	Open in IMG/M
3300006102\|Ga0075015_100851401	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300009520\|Ga0116214_1059095	Not Available	1394	Open in IMG/M
3300009525\|Ga0116220_10384929	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300009683\|Ga0116224_10144515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1146	Open in IMG/M
3300009683\|Ga0116224_10387813	Not Available	664	Open in IMG/M
3300009700\|Ga0116217_10257734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1130	Open in IMG/M
3300010159\|Ga0099796_10324253	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300010376\|Ga0126381_104191570	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300010867\|Ga0126347_1232456	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300016319\|Ga0182033_11974257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	531	Open in IMG/M
3300016341\|Ga0182035_11136751	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300016357\|Ga0182032_10440915	Not Available	1061	Open in IMG/M
3300016371\|Ga0182034_11179803	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300016387\|Ga0182040_10692844	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300016422\|Ga0182039_10536676	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300017972\|Ga0187781_10582277	All Organisms → cellular organisms → Bacteria → Terrabacteria group	806	Open in IMG/M
3300017975\|Ga0187782_11115215	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300018006\|Ga0187804_10107463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1151	Open in IMG/M
3300018047\|Ga0187859_10396863	All Organisms → cellular organisms → Bacteria → Terrabacteria group	757	Open in IMG/M
3300018086\|Ga0187769_10015429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4968	Open in IMG/M
3300018086\|Ga0187769_10845578	Not Available	692	Open in IMG/M
3300018090\|Ga0187770_10708344	Not Available	803	Open in IMG/M
3300020581\|Ga0210399_11421944	Not Available	541	Open in IMG/M
3300021388\|Ga0213875_10160836	Not Available	1053	Open in IMG/M
3300021402\|Ga0210385_10076917	All Organisms → cellular organisms → Bacteria	2284	Open in IMG/M
3300021403\|Ga0210397_10256780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1270	Open in IMG/M
3300021403\|Ga0210397_11320834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	560	Open in IMG/M
3300021404\|Ga0210389_10501363	All Organisms → cellular organisms → Bacteria → Terrabacteria group	955	Open in IMG/M
3300021404\|Ga0210389_11105285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	612	Open in IMG/M
3300021407\|Ga0210383_11294128	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300021420\|Ga0210394_11313205	Not Available	618	Open in IMG/M
3300021432\|Ga0210384_11017957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	730	Open in IMG/M
3300021478\|Ga0210402_10350585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1370	Open in IMG/M
3300021478\|Ga0210402_11228864	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300021560\|Ga0126371_10089638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3039	Open in IMG/M
3300021560\|Ga0126371_10824171	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300025527\|Ga0208714_1051655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	890	Open in IMG/M
3300025579\|Ga0207927_1051996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1054	Open in IMG/M
3300025619\|Ga0207926_1114034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300025725\|Ga0209638_1037355	Not Available	2103	Open in IMG/M
3300025852\|Ga0209124_10250037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	684	Open in IMG/M
3300025924\|Ga0207694_10552622	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300027010\|Ga0207839_1011573	Not Available	1031	Open in IMG/M
3300027297\|Ga0208241_1053661	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300027895\|Ga0209624_10246052	Not Available	1189	Open in IMG/M
3300028747\|Ga0302219_10343242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	583	Open in IMG/M
3300028879\|Ga0302229_10505687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	533	Open in IMG/M
3300029943\|Ga0311340_10357413	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1361	Open in IMG/M
3300029943\|Ga0311340_11219208	All Organisms → cellular organisms → Bacteria → Terrabacteria group	604	Open in IMG/M
3300029944\|Ga0311352_10122747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2267	Open in IMG/M
3300029951\|Ga0311371_10893897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1076	Open in IMG/M
3300029951\|Ga0311371_11595834	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300030013\|Ga0302178_10030434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3125	Open in IMG/M
3300030399\|Ga0311353_11634163	All Organisms → cellular organisms → Bacteria → Terrabacteria group	519	Open in IMG/M
3300030490\|Ga0302184_10096742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1342	Open in IMG/M
3300030548\|Ga0210252_10017014	Not Available	694	Open in IMG/M
3300030580\|Ga0311355_10275525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1706	Open in IMG/M
3300030617\|Ga0311356_10263290	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1739	Open in IMG/M
3300030730\|Ga0307482_1044042	Not Available	1059	Open in IMG/M
3300030741\|Ga0265459_13227193	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031057\|Ga0170834_111143244	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300031231\|Ga0170824_106424567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300031250\|Ga0265331_10285615	Not Available	739	Open in IMG/M
3300031525\|Ga0302326_10945633	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1219	Open in IMG/M
3300031544\|Ga0318534_10181367	Not Available	1216	Open in IMG/M
3300031572\|Ga0318515_10709046	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031640\|Ga0318555_10418357	Not Available	726	Open in IMG/M
3300031680\|Ga0318574_10003520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6358	Open in IMG/M
3300031680\|Ga0318574_10554688	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300031765\|Ga0318554_10155287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1300	Open in IMG/M
3300031765\|Ga0318554_10322169	Not Available	879	Open in IMG/M
3300031765\|Ga0318554_10819341	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031770\|Ga0318521_10015490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3426	Open in IMG/M
3300031781\|Ga0318547_10359986	Not Available	890	Open in IMG/M
3300031797\|Ga0318550_10428955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	639	Open in IMG/M
3300031819\|Ga0318568_10179670	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1302	Open in IMG/M
3300031821\|Ga0318567_10134299	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1360	Open in IMG/M
3300031846\|Ga0318512_10118054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1260	Open in IMG/M
3300031846\|Ga0318512_10371960	Not Available	716	Open in IMG/M
3300031860\|Ga0318495_10344506	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300031893\|Ga0318536_10639028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	531	Open in IMG/M
3300031894\|Ga0318522_10176568	Not Available	807	Open in IMG/M
3300031896\|Ga0318551_10891650	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031897\|Ga0318520_10260530	Not Available	1037	Open in IMG/M
3300031941\|Ga0310912_10828289	Not Available	714	Open in IMG/M
3300031946\|Ga0310910_11278075	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300031947\|Ga0310909_11180783	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300031959\|Ga0318530_10210310	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300032010\|Ga0318569_10083969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1422	Open in IMG/M
3300032010\|Ga0318569_10235898	Not Available	849	Open in IMG/M
3300032064\|Ga0318510_10381316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300032067\|Ga0318524_10262141	Not Available	890	Open in IMG/M
3300032089\|Ga0318525_10600863	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300032895\|Ga0335074_10048176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5881	Open in IMG/M
3300033134\|Ga0335073_10881034	Not Available	946	Open in IMG/M
3300033158\|Ga0335077_11083193	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300033289\|Ga0310914_11318227	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Plants	Host-Associated → Plants	5.50%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.82%
Peat	Environmental → Terrestrial → Peat	11.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Sediment	Environmental → Aquatic → Sediment	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.14%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	11.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.34%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.71%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	11.93%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	7.34%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.92%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.45%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	11.93%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.92%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001394	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 deep-092012	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002565	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0011-311	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010867	Boreal forest soil eukaryotic communities from Alaska, USA - C3-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025619	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025725	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Ref core NGADG0002-211 (SPAdes)	Environmental	Open in IMG/M
3300025852	Arctic peat soil from Barrow, Alaska - Barrow Graham LP Incubations 011-22A (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental	Open in IMG/M
3300028879	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029944	II_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030490	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3	Environmental	Open in IMG/M
3300030548	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO133-ANR016SO (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030741	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031250	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG	Host-Associated	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20191J14862_10350032	3300001394	Arctic Peat Soil	RASLDIRFVLRTPEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ*
JGIcombinedJ26739_1002865991	3300002245	Forest Soil	GRDPECTRANFDIKFVLRTPEEVFARPGLRDKTLQLGSGWRDARPFGPTREQLLALVSALRGVRKGARWDG*
JGI24137J36423_11168302	3300002565	Arctic Peat Soil	PEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ*
Ga0066676_102557891	3300005186	Soil	TPGEVFARAGLREKTLRLGSGWRDQQPLGPAREQLLALAAAP*
Ga0070713_1000062221	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DIKFVLRTPEEVFARPGLRDKTLELGSGWRDARPFGPTREQLLALVSALRRIRRRIRKGARWDG*
Ga0070711_1015942111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	NMDIRFVLRTPEEVFAAPGLRDKTLQLGAGWRDRRPYGPSREELLALVSAP*
Ga0070707_1017561152	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VLVLRTPDEVFARAGLRETTLRLASGWREQQPLGPTREQLLELVSAP*
Ga0068853_1020953671	3300005539	Corn Rhizosphere	TPEEVFARPGLRDKVLQLGSGWRDERPFGPNREQLLALVSAP*
Ga0068857_1013784042	3300005577	Corn Rhizosphere	VFARPGLRDKVLQLGSGWRDEPPFGPDREQLLALVSTP*
Ga0068854_1017487611	3300005578	Corn Rhizosphere	LRANFDIRFVLRTPEEVFARPGLRDKVLQLGSGWRDERPFGPNREQLLALVSAP*
Ga0070763_108649452	3300005610	Soil	LVLRTPEEVFARPGLRDKTLALGSHWRDEPPFGPTREQILSLVSAP*
Ga0097691_10725841	3300006055	Arctic Peat Soil	DAASRHDPDCLRASLDIRFVLRTPEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ*
Ga0075015_1008514012	3300006102	Watersheds	FARPGLRDKILQLGSGWRDVEPLGPSREQLLALASGP*
Ga0116214_10590954	3300009520	Peatlands Soil	FARPGLRDKIFELGSGWREEQQPGPTREQLLALASAQ*
Ga0116220_103849291	3300009525	Peatlands Soil	LEKALDTAFERDPDCVRANFDIRFVLQTPAEVFARPGLRDKILKLGSDWREEPPFGPTREQILAVVS*
Ga0116224_101445151	3300009683	Peatlands Soil	LAAAGRTDPDCLRASLDIGSVLRPREEVFARPGLRDKIFELGSGWREEQQPGPTREQLLALASAQ*
Ga0116224_103878132	3300009683	Peatlands Soil	PGLRDKTLRLGSGWREAPPFGPTREQILSLVSAP*
Ga0116217_102577341	3300009700	Peatlands Soil	IRFVLQPPAEVFARPGLRDKTLTLGSDWRDEPPFGPTRKQILALVSGA*
Ga0099796_103242532	3300010159	Vadose Zone Soil	RDPECTRANFDIRFVLRTPEEVFARPGLRDKTLQLGSGWRDAPPFGPTREQLLALVSALRHVMKGVRWDG*
Ga0126381_1041915701	3300010376	Tropical Forest Soil	FADAALRDKTLKLGAGWRDTPPFGPDREQLLALVCA*
Ga0126347_12324561	3300010867	Boreal Forest Soil	TRAEFDIRFVLRTPEEVFAQPGLREKTLRLGSGWRDAPPFGPTREELLALVS*
Ga0182033_119742571	3300016319	Soil	KALNAAASKDPECLRANFDIMFVLRTPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0182035_111367512	3300016341	Soil	FDIGFVLRPPHEVFARPGLRDKVLELGSGWRAEESFGPSREQLLSLATSP
Ga0182032_104409151	3300016357	Soil	AALDIGLVLHGPDEVFDRPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0182034_111798032	3300016371	Soil	LVLRTPDEVFDRPGLRDKTLQLGSGWRDREPFGPTREEILALASAE
Ga0182040_106928442	3300016387	Soil	ARQDPECLRGILDIALASRTPHEVFDRPGLRDKTLQLGSGWRDREPFGPTREEILALASA
Ga0182039_105366762	3300016422	Soil	LRSILDIALVLRTPDEVFDRPGLRDKTLQLGSGWRDREPFGPTREEILALASAE
Ga0187781_105822772	3300017972	Tropical Peatland	FARSGLAEKTLRLGSGWRDEEPFGPTREQLLALVSAP
Ga0187782_111152152	3300017975	Tropical Peatland	GPDEVFARPGLREKALRLGSDWRDESPLGPTREKILALASGA
Ga0187804_101074631	3300018006	Freshwater Sediment	RDPDCLRANFDIRFVLQPPAQVFARPGLRDKTLTLGSDWRGEPPFGPTRKQILALVSGA
Ga0187859_103968632	3300018047	Peatland	LFDMRFVLRTPDEVYARPGLRDKILKLGAGWRDEAPFGPTREQLLALVS
Ga0187769_100154291	3300018086	Tropical Peatland	LRTPEEVFARPGLRDKTLRLGSGWRDVEPFGPTREQLLALASA
Ga0187769_108455782	3300018086	Tropical Peatland	RLALRTPEEVFARPGLRDKTLRLGSGWRDVEPFGPTREQLLALASAR
Ga0187770_107083442	3300018090	Tropical Peatland	VRANFDIRFVLQPPAEVFARPGLRDKTLKLGSDWRDEPPFGPTRKQILALVYGA
Ga0210399_114219441	3300020581	Soil	EEVLSRPGLRDKILQLGSGWRDVEPLGPSREQLLALASGP
Ga0213875_101608362	3300021388	Plant Roots	PECLRANFDIRFVLRTPEEVFARPGLRDKTLQVGSGWREEQPFGPTREQLLALVSSS
Ga0210385_100769172	3300021402	Soil	MALNDAFAKDPECMRASFDIRFVLRTPGGVFARPGLRDKVLQLGSRWRDEPALGPNREQLLAMVFAP
Ga0210397_102567803	3300021403	Soil	PECTRANFDIRFVLRTPEEVFARPGLRDKTLQLGSGWRDAPPFGPTREQLLALVSAL
Ga0210397_113208341	3300021403	Soil	CLRASLDIGSVLRPPEEVFARPGLRDKIFELGSGWREEQQPGPTREQLLALASAQ
Ga0210389_105013631	3300021404	Soil	MRANFDIRFVLKTPEEVFARPGLRDKILQLGSGWRDAQPFGPTREQLLALVSAL
Ga0210389_111052851	3300021404	Soil	PQDPECLRANFDIRFVLRTAEEVFARPGLRDKVLELGSGWRDERPSGPSREQLLALASAP
Ga0210383_112941281	3300021407	Soil	LDTRLVLRTPEEVFARPGLRDKTLALGSQWRDEPPFGPTREQILSLVSAP
Ga0210394_113132051	3300021420	Soil	LDIGSVLRPPEEVFARPGLRDKIFELGSGWREEQQPGPTREQLLALASAQ
Ga0210384_110179571	3300021432	Soil	AAFGRDPECTRANFDIRFVLRTPEEVFARPGLRDKTLQLGSGWRDAPPFGPTREQLLALVSALRRAMKGTRWDG
Ga0210402_103505853	3300021478	Soil	DEVFAQPGLRDKTLRLGAGWRDEPALGPDREQLLTLVSAP
Ga0210402_112288642	3300021478	Soil	GKALGAAAGQDPDCLRAYLDIWLVLRTPGEVFARPGLCDKILQLGSGWRDVEPLGPNREQLLALASGP
Ga0126371_100896381	3300021560	Tropical Forest Soil	LHGPDEVFARPGLREKTLRLGAGWRDEPTLGPDREQLLRLVSAP
Ga0126371_108241712	3300021560	Tropical Forest Soil	SRVDPDCLRAVLDIALVLRTPGEVFSRAGLRDKTLRLGSHWRQEEPLGPSRDEVLALVAA
Ga0208714_10516551	3300025527	Arctic Peat Soil	PQDPDCLRANLAIGLVLRTPEEVFARPGLRDKTLRLGSGWREAQPLGPTREQLLALASAP
Ga0207927_10519961	3300025579	Arctic Peat Soil	DCLRASLDIRFVLRTPEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ
Ga0207926_11140342	3300025619	Arctic Peat Soil	FVLRTPEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ
Ga0209638_10373552	3300025725	Arctic Peat Soil	RHDPDCLRASLDIRFVLRTPEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ
Ga0209124_102500371	3300025852	Arctic Peat Soil	PEEVFARTELRDKTVELGSGWREEQPLGPDREQLLALASTQ
Ga0207694_105526221	3300025924	Corn Rhizosphere	AQDPECLRANFDIRFVLRTPEEVFARPGLRDKVLQLGSGWRDERPFGPNREQLLALVSAP
Ga0207839_10115732	3300027010	Tropical Forest Soil	LAVAAPQDPGCLRANFDIMLVLRTPEEVFARPGLRDKTLELGSGWRERVRFGPTREQLIALASAQ
Ga0208241_10536611	3300027297	Forest Soil	KFVLKTPEEVFARPGLRDKILQLGSGWRDAQPFGPTREQLLALVSAL
Ga0209624_102460521	3300027895	Forest Soil	IRLVLRTPQDLFAQPGLRDKTLRLGSGWREQQPPGPTREQILALAAGP
Ga0302219_103432422	3300028747	Palsa	FQQDPECARASLDIGFVLRTPEEIFARPGLRDKTLQLESHWREAQPFGPTREQLLALVSA
Ga0302229_105056872	3300028879	Palsa	EKALDTAFEQDPECARASLDIRFVLRRPEEIFARPGLRDKTLQLGSGWREAQPFGPTREQLLALVSAP
Ga0311340_103574134	3300029943	Palsa	PQDPDCLRAFLDTRLVLRTPEEAFARPGLRDKTLRLGASWREQPPLGPGREQLLALVSAR
Ga0311340_112192082	3300029943	Palsa	LVLRTPEEALARPGLRGKTLQLGSGWREQQPLGPDREQLLALAAAR
Ga0311352_101227471	3300029944	Palsa	ALDTAFQQDPECARASLDIGFVLRTPEEIFARPGLRDKTLQLGSHWREAQPFGPTREQLLALVSAP
Ga0311371_108938974	3300029951	Palsa	GAALPQDPDCLRALLDTRLVLRTPEEAFARPGLRDKTLRLGASWREQPPLGPGREQLLALVSAR
Ga0311371_115958341	3300029951	Palsa	AFEQDPECARASLDIRFVLRRPEEIFARPGLRDKTLQLGSGWREAQPFGPTREQLLALVSAP
Ga0302178_100304341	3300030013	Palsa	DCLRAFLDIRLVLRTPEEALARPGLRGKTLQLGSGWREQQPLGPDREQLLALATAR
Ga0311353_116341631	3300030399	Palsa	LPQDPDCLRAFLDTRLVLRTPEEAFARPGLRDKTLRLGASWREQPPLGPGREQLLALVSA
Ga0302184_100967421	3300030490	Palsa	RAFLDTRLVLRTPEEAFARPGLRDKTLRLGASWREQPPLGPGREQLLALVSAR
Ga0210252_100170141	3300030548	Soil	RPGLRDKTLTLGSDWRDEPPFGPTRKQILALVSGA
Ga0311355_102755251	3300030580	Palsa	ALDTAFQQDPECARASLDIGFVLRTPEEIFARPGLRDKTLQLESHWREAQPFGPTREQLLALVSAP
Ga0311356_102632901	3300030617	Palsa	PDCLRAFLDIRLVLRTPEEAFARPGLRGKTLQLGSGWREQQPLGPDREQLLALAAAR
Ga0307482_10440421	3300030730	Hardwood Forest Soil	VFAKPGLRDKVLEMGAGWRDAPAFGPTREELLSLVSAP
Ga0265459_132271931	3300030741	Soil	RDPECLRATFDIRFVLQTPAQVFARPGLRDKTLTLGSDWRDEPPFGPTRKQILALVSGA
Ga0170834_1111432442	3300031057	Forest Soil	EVFARPGLRDKTLKLGSDWRDEPPSGPAREQILALVSGA
Ga0170824_1064245672	3300031231	Forest Soil	GRDPECTRANFDIKFVLRTPEEVFARPGLRDKTLQLGSGWRDARPFGPTREQLLALVSALRHIMKGARWDG
Ga0265331_102856151	3300031250	Rhizosphere	TPDEVFAKPGLRDKVLQLGAGWRDTPAFGPTREELLSLVSAP
Ga0302326_109456331	3300031525	Palsa	RALGAAVPQDPDCLRAFLDIRLVLRTPEEAFARPGLRGKTLQLGSGWREQQPLGPDREQLLALAAAR
Ga0318534_101813671	3300031544	Soil	CLRAALDIGLVLHGPDEVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318515_107090462	3300031572	Soil	IMFVLRTPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318555_104183571	3300031640	Soil	FVLRTPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318574_100035201	3300031680	Soil	FDIMFVLRTPEDVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318574_105546882	3300031680	Soil	LDIRLVLHEPDEVFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0318554_101552873	3300031765	Soil	DFIGLVLHEPDEVFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0318554_103221691	3300031765	Soil	LVLHGPDEVFARPGLREKTLRLGSAWRDQPALGPDREQLLTLVSAP
Ga0318554_108193412	3300031765	Soil	TPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318521_100154904	3300031770	Soil	GQDPECLRASLDIQLVLRPPEEVFARPGLREKALRLGSGWRDEPSFGPTREQLLALATSP
Ga0318547_103599862	3300031781	Soil	PDEVFDRPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318550_104289552	3300031797	Soil	MFVLRTPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318568_101796701	3300031819	Soil	VFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0318567_101342991	3300031821	Soil	LLDIRLVLHGPDEVFARPGLREKTLRLGSAWRDQPTLGPDREQLLRLVSAP
Ga0318512_101180543	3300031846	Soil	CLRAALDIGLVLHGPDEVFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0318512_103719602	3300031846	Soil	RTPEEVFARPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318495_103445062	3300031860	Soil	VLHEPDEVFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0318536_106390282	3300031893	Soil	PPEEVFARPGLREKALRLGSGWRDEPSFGPTREQLLALATSP
Ga0318522_101765682	3300031894	Soil	SGSRPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318551_108916501	3300031896	Soil	LVLRTPGEVFARPGLRDKILQLGSGWRDVEPLGPSREQLLALASGG
Ga0318520_102605302	3300031897	Soil	DEVFARPGLREKTLRLGAGWRDEPGLGPDREQLLALVSAP
Ga0310912_108282892	3300031941	Soil	ALDIGLVLHGPDEVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0310910_112780751	3300031946	Soil	EVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0310909_111807832	3300031947	Soil	GPDEVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318530_102103102	3300031959	Soil	NLDIQLVLRPPEEVFARPGLRDKVLRLGSGWRDEPSFGPSREQLLALATSP
Ga0318569_100839693	3300032010	Soil	GLARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318569_102358981	3300032010	Soil	DEVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318510_103813161	3300032064	Soil	RPGLRDKTLELGSGWREEERFGPTREQLLALASGQ
Ga0318524_102621411	3300032067	Soil	DIGLVLHGPDEVFARPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP
Ga0318525_106008631	3300032089	Soil	EVFARPGLREKALRLGSGWRDEPSFGPTREQLLALATSP
Ga0335074_100481767	3300032895	Soil	MDIRFVLEPPAEVLTRPGLRDKIIELGSGWRDRPSFGPTREQLLDLVSA
Ga0335073_108810341	3300033134	Soil	LDVALQQDPQCLRAMFDTRFVLRTPEEVFADAGLRDKTLQLGSGWREVPPFGPTREQILALASAS
Ga0335077_110831931	3300033158	Soil	LAIRLVLQTPEEVFARPGLRDKTLRLGSGWRETQPRGPAREQLLALAAA
Ga0310914_113182272	3300033289	Soil	IGLVLHGPDEVFDRPGLREKTLRLGAGWRDEPGLDPDREQLLRLVSAP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089569

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences