Metagenome / Metatranscriptome Family F089556

Basic Information
Family ID	F089556
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	54 residues
Representative Sequence	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEKNDLQ
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	22.02 %
% of genes near scaffold ends (potentially truncated)	98.17 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	No

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (85.321 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (34.862 % of family members)
Environment Ontology (ENVO)	Unclassified (55.963 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (70.642 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1DelMOSum2011_100898301 2DelMOSpr2010_101140571 3DelMOWin2010_101541492 4JGI11705J14877_100845142 5JGI11705J14877_102035192 6JGI11772J19994_10436651 7JGI2171J19970_102915251 8JGI2160J19893_100126293 9Ga0069001_102165812 10Ga0074648_11153152 11Ga0074649_101663610 12Ga0075119_10687831 13Ga0075474_101854472 14Ga0075462_102274002 15Ga0075502_10902932 16Ga0075502_11279691 17Ga0075511_11603552 18Ga0075514_12050962 19Ga0075510_101658682 20Ga0075505_10423282 21Ga0098038_12749071 22Ga0098055_13756052 23Ga0075464_109155512 24Ga0075479_101835821 25Ga0075479_101896333 26Ga0070750_100674863 27Ga0070746_101758952 28Ga0070748_12638831 29Ga0075110_10663642 30Ga0070745_11947752 31Ga0070753_13654522 32Ga0099847_11559961 33Ga0075480_105999721 34Ga0118687_103762531 35Ga0115551_10589141 36Ga0115557_11497652 37Ga0115558_11374681 38Ga0115570_100983133 39Ga0115572_105203861 40Ga0114919_106334362 41Ga0129348_11015451 42Ga0129348_11228911 43Ga0129345_11486022 44Ga0136655_12123542 45Ga0129336_105227401 46Ga0114922_110458972 47Ga0129327_105488232 48Ga0182082_14741624 49Ga0181583_103671051 50Ga0181581_108597812 51Ga0181590_104662451 52Ga0181585_104010821 53Ga0180438_109666121 54Ga0181592_105548282 55Ga0193983_10051971 56Ga0194029_10323121 57Ga0194023_10765661 58Ga0193955_11147572 59Ga0181595_102216381 60Ga0181596_103412072 61Ga0181604_102081091 62Ga0181597_103092271 63Ga0213862_103776042 64Ga0213865_103938482 65Ga0213868_104495662 66Ga0213866_104925132 67Ga0222717_104946162 68Ga0222717_106734851 69Ga0222719_104090191 70Ga0212025_10798562 71Ga0212024_10058471 72Ga0212024_10254852 73Ga0212028_10169872 74Ga0196889_10439402 75Ga0196897_10198251 76Ga0196893_10092521 77Ga0196891_10672731 78Ga0196901_10772181 79Ga0224499_102211141 80Ga0222691_10029188 81Ga0255756_10454225 82Ga0233409_100753541 83Ga0255761_101583803 84Ga0222670_10033391 85Ga0210003_13617231 86Ga0255043_100236341 87Ga0208666_11493032 88Ga0208903_10941812 89Ga0209194_11565061 90Ga0208643_11674831 91Ga0208160_10505411 92Ga0209196_10749742 93Ga0208019_10818041 94Ga0209137_11121451 95Ga0208767_11191393 96Ga0208767_11800232 97Ga0208543_10054026 98Ga0208543_11252412 99Ga0208917_12868821 100Ga0209534_100903191 101Ga0209929_10522231 102Ga0209273_102290182 103Ga0209536_1002290455 104Ga0209536_1013311281 105Ga0316198_102483012 106Ga0314858_074912_1_177 107Ga0348336_092360_3_167 108Ga0348336_211328_1_162 109Ga0348337_080600_966_1139
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1DelMOSum2011_100898301 2DelMOSpr2010_101140571 3DelMOWin2010_101541492 4JGI11705J14877_100845142 5JGI11772J19994_10436651 6JGI2160J19893_100126293 7Ga0070745_11947752 8Ga0075480_105999721 9Ga0129327_105488232 10Ga0196901_10772181
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76. 1DelMOSum2011_100898301 2DelMOSpr2010_101140571 3DelMOWin2010_101541492 4JGI11705J14877_100845142 5JGI11772J19994_10436651 6JGI2160J19893_100126293 7Ga0070745_11947752 8Ga0075480_105999721 9Ga0129327_105488232 10Ga0196901_10772181
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.54% β-sheet: 0.00% Coil/Unstructured: 63.46%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF10124	Mu-like_gpT	3.67
PF00166	Cpn10	2.75
PF05065	Phage_capsid	2.75

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	2.75
COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	Mobilome: prophages, transposons [X]	2.75

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	14.68 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	6.42 %
Unclassified	root	N/A	85.32 %
Viruses	superkingdom	All Organisms → Viruses	8.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.42 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.75 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.92 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Flavobacteriaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Name	Rank	Taxonomy	Distribution
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %
unclassified Flavobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae	2.75 %

Name	Rank	Taxonomy	Distribution
Flavobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2.75 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	1.83 %
Unclassified	root	N/A	85.32 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
(restricted) 3300022938\|Ga0233409_10075354	Not Available	1031	Open in IMG/M
(restricted) 3300024338\|Ga0255043_10023634	All Organisms → Viruses	1721	Open in IMG/M
3300000115\|DelMOSum2011_c10089830	Not Available	1038	Open in IMG/M
3300000116\|DelMOSpr2010_c10114057	Not Available	989	Open in IMG/M
3300000117\|DelMOWin2010_c10154149	Not Available	755	Open in IMG/M
3300001419\|JGI11705J14877_10084514	Not Available	971	Open in IMG/M
3300001419\|JGI11705J14877_10203519	Not Available	507	Open in IMG/M
3300001748\|JGI11772J19994_1043665	Not Available	546	Open in IMG/M
3300001753\|JGI2171J19970_10291525	Not Available	516	Open in IMG/M
3300001855\|JGI2160J19893_10012629	Not Available	2020	Open in IMG/M

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Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	3.67%
Marine	Environmental → Aquatic → Marine	84.40%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	11.01%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	46.79%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.92%
Inlet	Environmental → Aquatic → Marine → Inlet	0.92%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	11.93%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.67%
Oceanic	Environmental → Aquatic → Marine → Oceanic	9.17%
Pelagic	Environmental → Aquatic → Marine → Pelagic	6.42%
River	Environmental → Aquatic → Freshwater → River	2.75%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	10.09%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Sediment	Environmental → Aquatic → Marine → Sediment	0.92%
Strait	Environmental → Aquatic → Marine → Strait	0.92%
Unclassified	Environmental → Aquatic → Marine → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%

Habitat	Taxonomy	Distribution
Epilimnion	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion	1.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	11.01%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	6.42%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment	2.75%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	1.83%
Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment	0.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	44.95%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	6.42%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	34.86%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	2.75%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	2.75%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	1.83%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater Microbial Mat	0.92%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	5.50%
Hypersaline Lake Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Sediment → Hypersaline Lake Sediment	0.92%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	2.75%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.75%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	0.92%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	3.67%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	6.42%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.92%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	0.92%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	2.75%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	1.83%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment	2.75%
Saline Water And Sediment	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment	1.83%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	11.01%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.92%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.67%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.92%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment	0.92%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Sediment	0.92%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	0.92%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.92%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000115	Marine microbial communities from Delaware Coast, sample from Delaware MO Summer July 2011	Environmental	Open in IMG/M
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300001419	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)	Environmental	Open in IMG/M
3300001748	Saline surface water microbial communities from Etoliko Lagoon, Greece - surface water (0 m)	Environmental	Open in IMG/M
3300001753	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-3-24_28	Environmental	Open in IMG/M
3300001855	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12	Environmental	Open in IMG/M
3300005215	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Tolay_CordB_D2	Environmental	Open in IMG/M
3300005512	Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_water	Environmental	Open in IMG/M
3300005613	Saline sediment microbial communities from Etoliko Lagoon, Greece - sediment	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2011_100898301	3300000115	Marine	MTKHKYIVNIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYHGTGNDFY
DelMOSpr2010_101140571	3300000116	Marine	MTKHKYIVNIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIK
DelMOWin2010_101541492	3300000117	Marine	MKKKYLVKIFTKHLQTKFEIESDKEINNTDELSKPIIDFIGKSDIQWEQNDL
JGI11705J14877_100845142	3300001419	Saline Water And Sediment	MRKYLIQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWE*
JGI11705J14877_102035192	3300001419	Saline Water And Sediment	MNKYLVKIFTKHLQTKFEIESDKEINDANELHKPIIDFLGKSDINWEEN
JGI11772J19994_10436651	3300001748	Saline Water And Sediment	MNKYLVKIFTKKLQTQFEIESDKEINDADELNKPIIDFLGKSDIKW
JGI2171J19970_102915251	3300001753	Marine Sediment	MRKYLVQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWEEN
JGI2160J19893_100126293	3300001855	Marine Sediment	MNKYLVKIFTKYLQTQFELESDREINTVXELHKPIIDFLGKSDXKWEXNDXXYTQYXXXFLYNL*
Ga0069001_102165812	3300005215	Natural And Restored Wetlands	MNKYLVKIFTKKLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQ
Ga0074648_11153152	3300005512	Saline Water And Sediment	MNKYLVKIFTKNLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQN
Ga0074649_101663610	3300005613	Saline Water And Sediment	MNKYLVKIFTKYLQTKFEIESDKEINDVDELNKYIIDFLGKSDINWEENDLQY
Ga0075119_10687831	3300005931	Saline Lake	MTKHKYIVNIFTKYLQTSFEIESEKEINNMEELNKPIIDFLGKSDIKWEKNDLQY
Ga0075474_101854472	3300006025	Aqueous	MNKYLVKIFTKHLQTKFEIESDKEINDANELNPHIIDFLGKSDIKWE
Ga0075462_102274002	3300006027	Aqueous	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWE
Ga0075502_10902932	3300006357	Aqueous	MRKYLVQIFTKYLQTKFEIESNKDINTIEELHPHIIDFLGKSDIKWE
Ga0075502_11279691	3300006357	Aqueous	MNKYLVKIFTKYLQTQFELESDREINTVDELHKPIIDFLGKSDIK
Ga0075511_11603552	3300006402	Aqueous	MNKYLVKIFTKKLQTEFEIESYKEINNADELNKPIIDFLGKSDIKWEQNDL
Ga0075514_12050962	3300006403	Aqueous	MRKYLVQIFTKYLQTKFEIESNKDINTIEELHPHIIDFLGKSDIKWEEND
Ga0075510_101658682	3300006405	Aqueous	MNKYLVKIFTKKLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQY
Ga0075505_10423282	3300006571	Aqueous	MRKYLIQIFTKYLQTKFEIESNKDINTIEELHPHIIDFLGKSDIKWEKNDLQYTSTV
Ga0098038_12749071	3300006735	Marine	MTQYKYLVKIFTKHLQTKFEIESEKEINNVDELNKPIIDFLGKSDIKWEQNDMQYTSTANDFY
Ga0098055_13756052	3300006793	Marine	MTKKYLVKIFTKHLQTKFEIESDKEINTADDLNQPIIDFIGKSDIQWEKNDLQFTSTGND
Ga0075464_109155512	3300006805	Aqueous	MNKYLVKIFTKYLQTQFELESDREINTVEELHKPIIDFLGKSDIKWEQNDL
Ga0075479_101835821	3300006870	Aqueous	MNKYLVKIFTKNLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEQND
Ga0075479_101896333	3300006870	Aqueous	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEKNDLQY
Ga0070750_100674863	3300006916	Aqueous	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKND
Ga0070746_101758952	3300006919	Aqueous	MTKHKYIVNIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKN
Ga0070748_12638831	3300006920	Aqueous	MKKYLIQIFTKYLQTKFEIESHKDVNTIEELHPHIIDFLGKSDIKWEQNDL
Ga0075110_10663642	3300007074	Saline Lake	MTKHKYIVNIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWE
Ga0070745_11947752	3300007344	Aqueous	LILKKTNNKKMTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEKNDLQYNSTI
Ga0070753_13654522	3300007346	Aqueous	MNKYLVKIFTKNLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEKNDLQFTST
Ga0099847_11559961	3300007540	Aqueous	MTEYKYLVKIFTKNLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEQNDLQYHGA
Ga0075480_105999721	3300008012	Aqueous	MTKKYLVKIFTKYLQTKFEIESEKEINDANELNPHIIDFIGKSDIQWEKNDLQFTSTGNDFY
Ga0118687_103762531	3300009124	Sediment	MNKYLVKIFTKNLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYN
Ga0115551_10589141	3300009193	Pelagic Marine	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEKNDL
Ga0115557_11497652	3300009443	Pelagic Marine	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQFTSTGNDFYI
Ga0115558_11374681	3300009449	Pelagic Marine	MTKYKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKND
Ga0115570_100983133	3300009496	Pelagic Marine	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEK
Ga0115572_105203861	3300009507	Pelagic Marine	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKN
Ga0114919_106334362	3300009529	Deep Subsurface	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEQNDMQ
Ga0129348_11015451	3300010296	Freshwater To Marine Saline Gradient	MRKYLVQIFTKYLQTKFEIESHKDVNTIEELHPHIIDFLGKSDIKWEQND
Ga0129348_11228911	3300010296	Freshwater To Marine Saline Gradient	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYNST
Ga0129345_11486022	3300010297	Freshwater To Marine Saline Gradient	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQY
Ga0136655_12123542	3300010316	Freshwater To Marine Saline Gradient	MNKYLVKIFTKYLQTQFELESDIEINTVEELHKPIIDFLGKSDINWEQN
Ga0129336_105227401	3300010370	Freshwater To Marine Saline Gradient	MKYKYLIQIFTKYLQTSFEIESNKDINTIEELHPHIIDFLGKSDIKWEENDLQYT
Ga0114922_110458972	3300011118	Deep Subsurface	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYHGTGNDFYI
Ga0129327_105488232	3300013010	Freshwater To Marine Saline Gradient	MRKYLVQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWEENDLQYTSTVNDFYI
Ga0182082_14741624	3300016771	Salt Marsh	MKYKYLIQIFTKYLQTKFEIESDKDINNADELNPHIIDFLGKSDIDWEQN
Ga0181583_103671051	3300017952	Salt Marsh	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWERNDLQFTSTGND
Ga0181581_108597812	3300017962	Salt Marsh	MNKYLVKIFTKYLQTQFELESDREINTVEELHKPIIDFLGKSDIKWEENDLQYT
Ga0181590_104662451	3300017967	Salt Marsh	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQN
Ga0181585_104010821	3300017969	Salt Marsh	MRKYLIQIFTKYLQTKFEIESDKEINDANELNPHIIDFLGKSDIKWEQNDL
Ga0180438_109666121	3300017971	Hypersaline Lake Sediment	MNKYLVKIFTKKLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLEYHSTI
Ga0181592_105548282	3300018421	Salt Marsh	MNKYLVKIFTKNLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQ
Ga0193983_10051971	3300019749	Sediment	MRKYLVQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWEENDLQYTSTVND
Ga0194029_10323121	3300019751	Freshwater	MTKKYLVKIFTKHLQTKFEIESNKEINTADDLNQPIIDFIGKSDIQWEKNDLQFT
Ga0194023_10765661	3300019756	Freshwater	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDL
Ga0193955_11147572	3300019761	Freshwater Microbial Mat	MTQYKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKW
Ga0181595_102216381	3300020053	Salt Marsh	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWERNDLQFTSTGNDF
Ga0181596_103412072	3300020177	Salt Marsh	MNKYLVKIFTKHLQTKFEIESDKEINDANELNPHIIDFLGKSDIKWERNDLQ
Ga0181604_102081091	3300020191	Salt Marsh	MRKYLIQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWE
Ga0181597_103092271	3300020194	Salt Marsh	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYTST
Ga0213862_103776042	3300021347	Seawater	MKKYLIQIFTKYLQTKFEIESHKDVNTVEELHPHIIDFLGKSDIKWEQ
Ga0213865_103938482	3300021373	Seawater	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYTSTINDF
Ga0213868_104495662	3300021389	Seawater	MTKKYLVKIFTKHLQTKFEIKSNKEINTADDLNQPIIDFIGKSDIQWEKNDLQFTSTGNDFY
Ga0213866_104925132	3300021425	Seawater	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQND
Ga0222717_104946162	3300021957	Estuarine Water	MNKYLVKIFTKNLQTQFEIESEKEINDADELNKPIIDFLGKSDIKWEQNDLQYNSTA
Ga0222717_106734851	3300021957	Estuarine Water	MTKKYLVKIFTKYLQTKFEIESDKEINTTDELNPHIIDFIGKSDINWEQNDLQYA
Ga0222719_104090191	3300021964	Estuarine Water	MNKYLVKIFTKNLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYNSTANDF
Ga0212025_10798562	3300022057	Aqueous	MNKYLVKIFTKYLQTQFELESDREINTVDELHKPIIDFLGKSDIKWEENDLQYR
Ga0212024_10058471	3300022065	Aqueous	MRKYLVQIFTKYLQTKFEIESNKDINTIEELHPHIIDFLGKSDIKWEKNDLQYTS
Ga0212024_10254852	3300022065	Aqueous	MRKYLVQIFTKYLQTSFEIESNKDINTVEELHPHIIDFLGKSDIKWEENDLQYTSTVS
Ga0212028_10169872	3300022071	Aqueous	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYSSTTNDF
Ga0196889_10439402	3300022072	Aqueous	MNKYLVKIFTKHLQTKFEIESDKEINDANELNPHIIDFLGKSDIKWERNE
Ga0196897_10198251	3300022158	Aqueous	MNKYLVKIFTKHLQTKFEIESDKEINDANELNLHIIDFLGKSDIKWERNDLQFTS
Ga0196893_10092521	3300022159	Aqueous	MNKYLVKIFTKKLQTQFEIESDKEINNADELNKPIIDFLGKSDINWEVNDLEYHSTSS
Ga0196891_10672731	3300022183	Aqueous	MNKYLVKIFTKYLQTQFELESDIEINTVEELHKPIIDFLGKSDIKWEENDLQYTSTVNGF
Ga0196901_10772181	3300022200	Aqueous	MNKYLVKIFTKKLQTQFEIESNKEINNADELNKPIIDFLGKSDINWEANDLEYHSTSSGFYIT
Ga0224499_102211141	3300022206	Sediment	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEKNDLQ
Ga0222691_10029188	3300022851	Saline Water	MTKHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQY
Ga0255756_10454225	3300022905	Salt Marsh	MNKYLVKIFTKHLQTKFEIESDKEINDANELNPHIIDFLGKSDIKWEKNDLQFT
(restricted) Ga0233409_100753541	3300022938	Seawater	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQ
Ga0255761_101583803	3300023170	Salt Marsh	MNKYLVKIFTKYLQTQFELESDREINTVDELHKPIIDFLGKSDIKWEQNDL
Ga0222670_10033391	3300023294	Saline Water	MTKHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYHGTGN
Ga0210003_13617231	3300024262	Deep Subsurface	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYH
(restricted) Ga0255043_100236341	3300024338	Seawater	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYTSS
Ga0208666_11493032	3300025102	Marine	MTQYKYLVKIFTKHLQTKFEIESEKEINNVDELNKPIIDFLGKSDIKWEQNDMQYTSTAN
Ga0208903_10941812	3300025502	Saline Lake	MTKHKYIVNIFTKYLQTSFEIESEKEINNMEELNKPIIDFLGKSDIKWEKNDLQYHSTGNDF
Ga0209194_11565061	3300025632	Pelagic Marine	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEKNDLQYNSTI
Ga0208643_11674831	3300025645	Aqueous	MNKYLVKIFTKKLQTQFEIESDKEINNADELNKPIIDFLGKSDINWEVNDLEYH
Ga0208160_10505411	3300025647	Aqueous	MNKYLVKIFTKYLQTQFELESDIEINTVEELHKPIIDFLGKSDINWEQND
Ga0209196_10749742	3300025654	Pelagic Marine	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEK
Ga0208019_10818041	3300025687	Aqueous	MRKYLVQIFTKYLQTKFEIESNKDINTIEELHPHIIDFLGKSDIKWEKNDLQY
Ga0209137_11121451	3300025767	Marine	MNKYLVKIFTKKLQTQFEIESDKEINNADELNKPIIDFLGKSDIKWEQNDLEY
Ga0208767_11191393	3300025769	Aqueous	MTQYKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEKNDLQF
Ga0208767_11800232	3300025769	Aqueous	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQY
Ga0208543_10054026	3300025810	Aqueous	MNKYLVKIFTKNLQTKFEIESDKEINTADELNKPIIDFLGKSDIKWEQN
Ga0208543_11252412	3300025810	Aqueous	MTKKYLVKIFTKHLQTKFEIESNKEINTADDLNQPIIDFIGKSDIQWEKNDLQFTSTGNDFY
Ga0208917_12868821	3300025840	Aqueous	MTKHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYTST
Ga0209534_100903191	3300025880	Pelagic Marine	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWE
Ga0209929_10522231	3300026187	Pond Water	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEENDLQYTSTVND
Ga0209273_102290182	3300027790	Marine Sediment	MTQYKYLVKIFTKHLQTKFEIESEKEINNADELNKPIIDFLGKSDIKWEKNDLQYNS
Ga0209536_1002290455	3300027917	Marine Sediment	MTQYKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEQNDLQF
Ga0209536_1013311281	3300027917	Marine Sediment	MNKYLVKIFTKHLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEENDLQYTSTVNDF
Ga0316198_102483012	3300032251	Sediment	MTEHKYIVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYH
Ga0314858_074912_1_177	3300033742	Sea-Ice Brine	MTHKYLVKIFTKYLQTSFEIESEKEINNTEELNKPIIDFLGKSDIKWEKNDLQYHGTGN
Ga0348336_092360_3_167	3300034375	Aqueous	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQYSS
Ga0348336_211328_1_162	3300034375	Aqueous	MNKYLVKIFTKNLQTKFEIESDKEINNADELNKPIIDFLGKSDIKWEKNDLQFT
Ga0348337_080600_966_1139	3300034418	Aqueous	MNKYLVKIFTKHLQTQFEIESDKEINDADELNKPIIDFLGKSDIKWEQNDLQFTSTGN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters