Metagenome / Metatranscriptome Family F089547

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089547
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	97 residues
Representative Sequence	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Number of Associated Samples	83
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	73.39 %
% of genes near scaffold ends (potentially truncated)	26.61 %
% of genes from short scaffolds (< 2000 bps)	80.73 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.165 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (43.119 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.798 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 40.00% Coil/Unstructured: 60.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
b.60.1.1: Retinol binding protein-like	d1x8pa_	1x8p	0.72771
b.61.8.1: YdhA-like	d2f09a1	2f09	0.72609
b.60.1.6: Phenolic acid decarboxylase (PAD)	d2w2aa_	2w2a	0.70281
b.61.3.1: D-aminopeptidase, middle and C-terminal domains	d1ei5a1	1ei5	0.69079
b.61.7.1: Extracellular hemoglobin linker subunit, receptor domain	d2gtlo1	2gtl	0.67525

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13650	Asp_protease_2	5.50
PF00313	CSD	2.75
PF04408	HA2	2.75
PF00274	Glycolytic	2.75
PF02586	SRAP	1.83
PF01814	Hemerythrin	1.83
PF04828	GFA	1.83
PF00027	cNMP_binding	1.83
PF00521	DNA_topoisoIV	1.83
PF12680	SnoaL_2	1.83
PF01329	Pterin_4a	1.83
PF00196	GerE	1.83
PF02581	TMP-TENI	0.92
PF12833	HTH_18	0.92
PF00291	PALP	0.92
PF13676	TIR_2	0.92
PF14534	DUF4440	0.92
PF00144	Beta-lactamase	0.92
PF14696	Glyoxalase_5	0.92
PF10399	UCR_Fe-S_N	0.92
PF00011	HSP20	0.92
PF04024	PspC	0.92
PF13602	ADH_zinc_N_2	0.92
PF00351	Biopterin_H	0.92
PF04055	Radical_SAM	0.92
PF00072	Response_reg	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1643	HrpA-like RNA helicase	Translation, ribosomal structure and biogenesis [J]	2.75
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	2.75
COG0188	DNA gyrase/topoisomerase IV, subunit A	Replication, recombination and repair [L]	1.83
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.83
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	1.83
COG3791	Uncharacterized conserved protein	Function unknown [S]	1.83
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.92
COG0352	Thiamine monophosphate synthase	Coenzyme transport and metabolism [H]	0.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG3186	Phenylalanine-4-hydroxylase	Amino acid transport and metabolism [E]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.17 %
Unclassified	root	N/A	1.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.17 %
Unclassified	root	N/A	1.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.17 %
Unclassified	root	N/A	1.83 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	95.41 %
Unclassified	root	N/A	1.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	88.99 %
Unclassified	root	N/A	1.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	83.49 %
Unclassified	root	N/A	1.83 %
Vibrionales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales	0.92 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.92 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	81.65 %
Unclassified	root	N/A	1.83 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	61.47 %
Sphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium	2.75 %
Unclassified	root	N/A	1.83 %
Sphingomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium	0.92 %
Rhizorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Rhizorhabdus	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	4.59 %
unclassified Sphingobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium	2.75 %
Unclassified	root	N/A	1.83 %
Rhizorhabdus wittichii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Rhizorhabdus → Rhizorhabdus wittichii	0.92 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	0.92 %
Sphingomicrobium flavum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium → Sphingomicrobium flavum	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Sphingomonas sp. NFR15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NFR15	2.75 %
Sphingobium sp. AP49	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	2.75 %
Unclassified	root	N/A	1.83 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	0.92 %
Sphingomonas sp. G124	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. G124	0.92 %
Rhizorhabdus wittichii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Rhizorhabdus → Rhizorhabdus wittichii	0.92 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	0.92 %
Sphingomicrobium flavum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium → Sphingomicrobium flavum	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Vibrionaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_12276876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	841	Open in IMG/M
3300000559\|F14TC_100909976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Rhizorhabdus → Rhizorhabdus wittichii	1294	Open in IMG/M
3300001431\|F14TB_100256261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	671	Open in IMG/M
3300001431\|F14TB_101809381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	618	Open in IMG/M
3300001976\|JGI24752J21851_1057869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	532	Open in IMG/M
3300002128\|JGI24036J26619_10115039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	554	Open in IMG/M
3300002459\|JGI24751J29686_10066052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	745	Open in IMG/M
3300003267\|soilL1_10125274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1396	Open in IMG/M
3300003267\|soilL1_10144686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1546	Open in IMG/M
3300003316\|rootH1_10108854	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300004114\|Ga0062593_101227209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	789	Open in IMG/M
3300004157\|Ga0062590_100203795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1433	Open in IMG/M
3300004463\|Ga0063356_100140272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2730	Open in IMG/M
3300004463\|Ga0063356_100529805	All Organisms → cellular organisms → Bacteria → Proteobacteria	1568	Open in IMG/M
3300004463\|Ga0063356_106422269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	503	Open in IMG/M
3300004479\|Ga0062595_100053834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1862	Open in IMG/M
3300004479\|Ga0062595_102102010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingobium → unclassified Sphingobium → Sphingobium sp. AP49	549	Open in IMG/M
3300004643\|Ga0062591_100354926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1187	Open in IMG/M
3300005093\|Ga0062594_100511947	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1019	Open in IMG/M
3300005159\|Ga0066808_1018466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	672	Open in IMG/M
3300005168\|Ga0066809_10003784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2560	Open in IMG/M
3300005290\|Ga0065712_10128365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1579	Open in IMG/M
3300005293\|Ga0065715_10173432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1463	Open in IMG/M
3300005293\|Ga0065715_10754993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Vibrionales → Vibrionaceae	628	Open in IMG/M
3300005330\|Ga0070690_100184752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1442	Open in IMG/M
3300005331\|Ga0070670_100017006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	6242	Open in IMG/M
3300005333\|Ga0070677_10413980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	713	Open in IMG/M
3300005338\|Ga0068868_101570692	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300005347\|Ga0070668_100296493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1355	Open in IMG/M
3300005347\|Ga0070668_100928663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	779	Open in IMG/M
3300005347\|Ga0070668_100944647	All Organisms → cellular organisms → Bacteria → Proteobacteria	773	Open in IMG/M
3300005353\|Ga0070669_100963276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	731	Open in IMG/M
3300005356\|Ga0070674_100026625	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3780	Open in IMG/M
3300005364\|Ga0070673_100244797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1561	Open in IMG/M
3300005438\|Ga0070701_10106894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1558	Open in IMG/M
3300005441\|Ga0070700_100719459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	796	Open in IMG/M
3300005566\|Ga0066693_10136318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	913	Open in IMG/M
3300005617\|Ga0068859_103160666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	501	Open in IMG/M
3300005840\|Ga0068870_10487077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	819	Open in IMG/M
3300005843\|Ga0068860_100214734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1867	Open in IMG/M
3300005844\|Ga0068862_100051504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3521	Open in IMG/M
3300005844\|Ga0068862_100421666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1252	Open in IMG/M
3300005844\|Ga0068862_100600130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1057	Open in IMG/M
3300006576\|Ga0074047_11971376	All Organisms → cellular organisms → Bacteria → Proteobacteria	1280	Open in IMG/M
3300006581\|Ga0074048_13495411	All Organisms → cellular organisms → Bacteria → Proteobacteria	2203	Open in IMG/M
3300009092\|Ga0105250_10385479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	619	Open in IMG/M
3300009094\|Ga0111539_10360552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1692	Open in IMG/M
3300009156\|Ga0111538_10629166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1361	Open in IMG/M
3300009156\|Ga0111538_12400039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	662	Open in IMG/M
3300012901\|Ga0157288_10089581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	813	Open in IMG/M
3300012911\|Ga0157301_10212140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	659	Open in IMG/M
3300013100\|Ga0157373_11172582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	578	Open in IMG/M
3300014325\|Ga0163163_10105774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2840	Open in IMG/M
3300014326\|Ga0157380_10006995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	7987	Open in IMG/M
3300014326\|Ga0157380_10788575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	966	Open in IMG/M
3300015371\|Ga0132258_11336922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1811	Open in IMG/M
3300015371\|Ga0132258_11692442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	1596	Open in IMG/M
3300015372\|Ga0132256_100037872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4409	Open in IMG/M
3300015372\|Ga0132256_100114718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	2647	Open in IMG/M
3300015373\|Ga0132257_100418360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1632	Open in IMG/M
3300015373\|Ga0132257_101615274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	829	Open in IMG/M
3300015374\|Ga0132255_100045748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5663	Open in IMG/M
3300015374\|Ga0132255_102592100	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300018481\|Ga0190271_13507868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	525	Open in IMG/M
3300025271\|Ga0207666_1003347	Not Available	1969	Open in IMG/M
3300025290\|Ga0207673_1002606	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. G124	2067	Open in IMG/M
3300025893\|Ga0207682_10267455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	798	Open in IMG/M
3300025908\|Ga0207643_11143637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	502	Open in IMG/M
3300025923\|Ga0207681_10021868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	4072	Open in IMG/M
3300025923\|Ga0207681_10133564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1838	Open in IMG/M
3300025925\|Ga0207650_10048368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3137	Open in IMG/M
3300025933\|Ga0207706_10003048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	16146	Open in IMG/M
3300025960\|Ga0207651_10137038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1884	Open in IMG/M
3300025972\|Ga0207668_10006466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	6928	Open in IMG/M
3300025972\|Ga0207668_10191873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1620	Open in IMG/M
3300025972\|Ga0207668_10322514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1282	Open in IMG/M
3300025981\|Ga0207640_12015595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	523	Open in IMG/M
3300026075\|Ga0207708_10250237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1428	Open in IMG/M
3300026095\|Ga0207676_11322252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	716	Open in IMG/M
3300026118\|Ga0207675_100050388	All Organisms → cellular organisms → Bacteria → Proteobacteria	3885	Open in IMG/M
3300027560\|Ga0207981_1022649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1135	Open in IMG/M
3300027560\|Ga0207981_1094916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	549	Open in IMG/M
3300027907\|Ga0207428_10173984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1629	Open in IMG/M
3300028380\|Ga0268265_10246598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1579	Open in IMG/M
3300028380\|Ga0268265_10441281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1213	Open in IMG/M
3300028587\|Ga0247828_11084932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	529	Open in IMG/M
3300028590\|Ga0247823_10201066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1514	Open in IMG/M
3300028596\|Ga0247821_10091916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomicrobium → Sphingomicrobium flavum	1699	Open in IMG/M
3300028597\|Ga0247820_10066607	Not Available	2131	Open in IMG/M
3300031477\|Ga0314812_103077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1196	Open in IMG/M
3300031492\|Ga0314808_103960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1371	Open in IMG/M
3300031494\|Ga0314807_102367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1206	Open in IMG/M
3300031538\|Ga0310888_10025454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2543	Open in IMG/M
3300031562\|Ga0310886_10026501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2394	Open in IMG/M
3300031562\|Ga0310886_10549511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	703	Open in IMG/M
3300031854\|Ga0310904_11340055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	519	Open in IMG/M
3300031892\|Ga0310893_10307191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NFR15	673	Open in IMG/M
3300031892\|Ga0310893_10560784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	518	Open in IMG/M
3300031908\|Ga0310900_10629160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	852	Open in IMG/M
3300031908\|Ga0310900_11032538	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031913\|Ga0310891_10014769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1865	Open in IMG/M
3300031944\|Ga0310884_10426686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	766	Open in IMG/M
3300032003\|Ga0310897_10332120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NFR15	703	Open in IMG/M
3300032013\|Ga0310906_11313313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	529	Open in IMG/M
3300032075\|Ga0310890_10079271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1991	Open in IMG/M
3300032179\|Ga0310889_10033979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. NFR15	1896	Open in IMG/M
3300032179\|Ga0310889_10690446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	532	Open in IMG/M
3300032421\|Ga0310812_10021829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2269	Open in IMG/M
3300032421\|Ga0310812_10467391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.29%
Environmental	Environmental	47.71%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.29%
Terrestrial	Environmental → Terrestrial	44.95%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	44.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	25.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	24.77%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Roots	Host-Associated → Plants → Roots	0.92%
Rhizome	Host-Associated → Plants → Rhizome	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.61%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.43%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.26%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.34%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	2.75%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	17.43%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.43%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.01%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.34%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	2.75%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizome → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	17.43%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	11.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.92%
Sugarcane Root And Bulk Soil	Host-Associated → Plants → Rhizome → Unclassified → Unclassified → Sugarcane Root And Bulk Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002459	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6	Host-Associated	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300003316	Sugarcane root Sample L1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005159	Soil and rhizosphere microbial communities from Laval, Canada - mgLPB	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005566	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025290	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5	Host-Associated	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300031477	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031492	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031494	Metatranscriptome of soil surface biofilm microbial communities from soil inoculated with nitrogen-fixing consortium DG1, State College, Pennsylvania, United States - STER_N_R4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_122768761	3300000550	Soil	VNARLTALAVALATPVEFSTYRCLDNSVFTLSTSDEMAIVRFKDGEYRLPRRRSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP*
F14TC_1009099761	3300000559	Soil	VCLTALAVALATPVEFSTYRCLDDSVFTLSTSDEMAIVRFKDGEYRLPRRRSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP*
F14TB_1002562611	3300001431	Soil	VKVWPTALAIALTSSSQFSTYICLDNTVFTLSASDEMAIVRFKDGEYHLPRRRSALAIKYATKDATLYLDGQFAAFVANDRPLPGCYKTESGERRSR*
F14TB_1018093812	3300001431	Soil	MRRGVSVNARLTALAVALATPVEFSTYLCLDDSVFTLSTSDEMAIVRFKDGEYRLPRRRSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP*
JGI24752J21851_10578693	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	NPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
JGI24036J26619_101150391	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEXATLYLDGQFAAFAAXD
JGI24751J29686_100660522	3300002459	Corn, Switchgrass And Miscanthus Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEXATLYLDGQFAAFAAXDRPLPGCHKLESGERRSP*
soilL1_101252741	3300003267	Sugarcane Root And Bulk Soil	VAISLTAMTMSLMAAAPFSTYICLDDSVFTLSTTDEMAIVRFKDGEYRLPRRRSSLAVKYATEQATLFLDFDGEFAAFVADDRPLPGCHRKEAK
soilL1_101446863	3300003267	Sugarcane Root And Bulk Soil	VTLWLTAIALAVADPVEYSTYVCLDNSVFTLRTTEDLAIVRFRDGEYRLPRRSSSIAIKYATEEATLYVDGEFAAFVADDRPLPGCHKMKPGERRQP*
rootH1_101088542	3300003316	Sugarcane Root And Bulk Soil	VAISLTAMTVSLMAAAPFSTYICLDDSVFTLSTTDEMAIVRFKDGEYRLPRRRSSLAVKYATEQATLFLDFDGEFAAFVADDRPLPGCHRKEAKVGR*
Ga0062593_1012272092	3300004114	Soil	VETTTYVCLDDTTFTISASDTIAIVRFKDGEYRLPRRSSSLATKYASEEATLYLDGDFAAFVTDERALPGCCKKGTHVRRPQ*
Ga0062590_1002037952	3300004157	Soil	VGRGESVKIWLTALVLANPVETTTYVCLDDTTFTISASDTIAIVRFKDGEYRLPRRSSSLATKYASEEATLYLDGDFAASVTDERALPGCYKKGTHVRRPQ*
Ga0063356_1001402723	3300004463	Arabidopsis Thaliana Rhizosphere	VHFSLIVLAAALNGSSQFSTYVCLDDTVFTLSTSNEMAIVRFKDGEYRLPRRRSTLAIKYATEQATLYLDGEFAAFVADDRPLPGCHKLKSVAGGSR*
Ga0063356_1005298052	3300004463	Arabidopsis Thaliana Rhizosphere	MAWLIILAVASISQPQIATYQCLDDTVFTLSTTDEVAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSDKPPVP*
Ga0063356_1064222691	3300004463	Arabidopsis Thaliana Rhizosphere	VKVWLTALALVNPVETTTYVCLDETVFTISASDQLAIVRFNDGEYRLPRRSSSLATKYASEEATLYLDGDFAAFVTDERALPGCYKKGTRVR*
Ga0062595_1000538341	3300004479	Soil	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0062595_1021020101	3300004479	Soil	VKVSLTALAVALIGSTQNSTYVCLDNSVFTLSASDEMAIVRFKDGEYRLPRRKSALAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQESAKRRSP*
Ga0062591_1003549262	3300004643	Soil	VGRGESVKIWLTALVLANPVETTTYVCLDDTTFTISASDTIAIVRFKDGEYRLPRRSSSLATKYASEEATLYLDGDFAAFVTDERALPGCYKKGTHVRRPQ*
Ga0062594_1005119472	3300005093	Soil	VKIWLTALVLANPVETTTYVCLDDTTFTISASDTIAIVRFKDGEYRLPRRSSSLATKYASEEATLYLDGDFAAFVTDERALPGCYKKGTHVRRPQ*
Ga0066808_10184661	3300005159	Soil	VKFWLTIVAVASINPANFSTYLCLDDSIFTLSTSDEIAIVRFQDGEYRLPRRSSAFAIKYASKEATLYLDGEFAAFVADDRPLPGCYKLEPGERG*
Ga0066809_100037844	3300005168	Soil	VNVCLTVLAVALTYPVEFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRRSALAIKYATKDATLYLDGKFAAFVANDRPLPGCHKLESGERRSP*
Ga0065712_101283653	3300005290	Miscanthus Rhizosphere	VDVNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0065715_101734321	3300005293	Miscanthus Rhizosphere	VNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0065715_107549932	3300005293	Miscanthus Rhizosphere	VNLGLTALAMALANPAQFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRSSALAIKYATEDATLYLDDKFAAFVANDRPLPGCHKMEPGERKTR*
Ga0070690_1001847521	3300005330	Switchgrass Rhizosphere	ACLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0070670_1000170066	3300005331	Switchgrass Rhizosphere	VKVWLTALAVALTNPVEFSTYLCLDNSVFTLSTSDQMAIVRFSDGEYRLPRRRSSLAIKYATDDATLYLDGNFAAFVANDRPLPGCHRLDAGERRSP*
Ga0070677_104139802	3300005333	Miscanthus Rhizosphere	VNVCLTALALALTSPVELSTYICLDNTVFTLSTSAEMAIVRFKDGQYRLPRRQSAIAIKYATSDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP*
Ga0068868_1015706922	3300005338	Miscanthus Rhizosphere	INSGVRGVDVNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0070668_1002964932	3300005347	Switchgrass Rhizosphere	VKVSLTALAVALIGWTQNSTYVCLDNSVFTLSASDEMAIVRFKDGEYRLPRRKSALAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQEAAKRRAP*
Ga0070668_1009286631	3300005347	Switchgrass Rhizosphere	VKFWLTIVAVASINPANFSTYLCLDDSIFTLSTSDEIAIVRFQDGEYRLPRRSSAFAIKYASKEATLYLDGEFAAFVADDRPLPGCYKLE
Ga0070668_1009446471	3300005347	Switchgrass Rhizosphere	MAWLIILAVASVSQPQIATYQCLDDTVFTLSTTDEVAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSDKPPVP*
Ga0070669_1009632761	3300005353	Switchgrass Rhizosphere	VKFWLTIVAVASINPANFSTYLCLDDSIFTLSTSDEIAIVRFQDGEYRLPRRPSDVAIKYASKEATLYLDGEFAAFVAADRPLPGCYKLESGERG*
Ga0070674_1000266255	3300005356	Miscanthus Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDHMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0070673_1002447973	3300005364	Switchgrass Rhizosphere	VDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0070701_101068941	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	DVNACLTALVVALTNPVGFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0070700_1007194592	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VDVNVCLTALVVALTHPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYHKLESGERRSP*
Ga0066693_101363182	3300005566	Soil	VNVCLTALAVALTNPVGFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRQSALATKYATKEATLYLDGQFAAFVADDRPLPGCYKLESGERR
Ga0068859_1031606661	3300005617	Switchgrass Rhizosphere	VNACLTALVVALTNPVGFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0068870_104870771	3300005840	Miscanthus Rhizosphere	KRLNGLLISISEISGVNVGLTAFAIAIANPAPFATYVCLDHSVFTLSTSEAMAIVRFTDGEYRLPRRKSSLATKYATEEATLYLDGEFAAFVANDRPLPGCTKMDPGERG*
Ga0068860_1002147345	3300005843	Switchgrass Rhizosphere	VDVNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0068862_1000515045	3300005844	Switchgrass Rhizosphere	VNFWSIMLAVVPINPVNFSTYICLDNTTFTLSTSNEVAIVRFHDGLYRLPRRSSAIAIKYASEDATLYLDGEFAAFVADDRPLPGCHKLEAGERG*
Ga0068862_1004216662	3300005844	Switchgrass Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYHKLESGERRSP*
Ga0068862_1006001301	3300005844	Switchgrass Rhizosphere	VNVGLTAFAIAIANPAPFATYVCLDHSVFTLSTSEAMAIVRFTDGEYRLPRRKSSLATKYATEEATLYLDGEFAAFVANDRPLPGCTKMDPGERG*
Ga0074047_119713761	3300006576	Soil	MRRGAGVNVCLTALAVALINPVGFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRRSALAIKYATKDATLYLDGQFAAFVANDRPLPGCHKLESGERRSP*
Ga0074048_134954113	3300006581	Soil	MRRGAGVNVCLTVLAVALTYPVEFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRRSALAIKYATKDATLYLDGKFAAFVANDRPLPGCHKLESGERRSP*
Ga0105250_103854791	3300009092	Switchgrass Rhizosphere	VDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0111539_103605524	3300009094	Populus Rhizosphere	VTFWLAIIAAASVNPADFSTYLCLDNSIFTLSTSNEIAIVRFQDGEYRLPRRPSDVAIKYASKEATLYLDGEFAAFVADDRPLPGCYKLEAGERG*
Ga0111538_106291662	3300009156	Populus Rhizosphere	VTFWLAIIAAASVNPADFSTYLCLDNSIFTLSTSNEIAIVRFQDGEYRLPRRPSDLAIKYASNEATLYLDGEFAAFVADDRPLPGCYKLEAGERG*
Ga0111538_124000391	3300009156	Populus Rhizosphere	VKFWLTIVAVASINPANFSTYLCLDDSIFTLSTSDEIAIVRFQDGEYRLPRRSSAFAIKYASKEATLYLDGEFAAFVADDRPLPGCYKLESGERG*
Ga0157288_100895812	3300012901	Soil	VDVNACQTALVVALINPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0157301_102121401	3300012911	Soil	VDVNACLTALVVALTNPVGFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0157373_111725822	3300013100	Corn Rhizosphere	MAWLIILAVASISQPQIATYQCLDDTVFTLSTTDEIAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSDKPPVP*
Ga0163163_101057745	3300014325	Switchgrass Rhizosphere	VGVKVWLTALAVALTNPVEFSTYLCLDNSVFTLSTSDQMAIVRFSDGEYRLPRRRSSLAIKYATDDATLYLDGNFAAFVANDRPLPGCHRLDAGERRSP*
Ga0157380_100069957	3300014326	Switchgrass Rhizosphere	VSVNVCLTALALALTSPIELSTYICLDNTVFTLSTSAEMAIVRFKDGQYRLPRRQSAIAIKYATSDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP*
Ga0157380_107885752	3300014326	Switchgrass Rhizosphere	VKPWLIILAVAPINPVNFSTYMCLDDTMFTLSTSNDIAIVRFQDGEYRLPRRSSDIAIKYASKEATLYIDGEFAAFAADDRPLPGCYKLEPGERG*
Ga0132258_113369223	3300015371	Arabidopsis Rhizosphere	VEVWLAALAMALIDPVGFSTYMCLDDTVFTLSATNEMAIVRFQDGEYRLPRRSSSIATKDATEDATLYLDGDFAAFVANDRPLPGCYKMENSERG*
Ga0132258_116924422	3300015371	Arabidopsis Rhizosphere	VKIWLTALAVAPINPVGYSTYICLDDTVFTLSTSDEMAIVRFKDGEYRLQRRSSALAIKYASKQATLFLDGEFAAFVADDRPLPGCYKLEEGERG*
Ga0132256_1000378726	3300015372	Arabidopsis Rhizosphere	VDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDNMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP*
Ga0132256_1001147183	3300015372	Arabidopsis Rhizosphere	MRRGARVKVWLTALAVALTNPVEFSTYLCLDDSVFTLSTSDEMAIVRFKDGEYRLPRRRSSLATKYATDEATLYLDGNFAAFVANDRPLPGCHKMDASG
Ga0132257_1004183603	3300015373	Arabidopsis Rhizosphere	MRRGAGVKVWLTALAVALTNPVEFSTYLCLDDSVFTLSTSDEMAIVRFKDGEYRLPRRRSSLATKYATDEATLYLDGNFAAFVANDRPLPGCHKMDAGGSRSP*
Ga0132257_1016152742	3300015373	Arabidopsis Rhizosphere	VEVWLAALAMALAGPVGFSTYMCLDDTVFTLSTTNEMAIVRFQDGEYRLPRRSSSIATKDATEDATLYLDGDFAAFVANDRPLPGCYKMENSERG*
Ga0132255_1000457484	3300015374	Arabidopsis Rhizosphere	VKVWLTALAVALTNPVEFSTYLCLDDSVFTLSTSDEMAIVRFKDGEYRLPRRRSSLATKYATDEATLYLDGNFAAFVANDRPLPGCHKMDAGGSRSP*
Ga0132255_1025921002	3300015374	Arabidopsis Rhizosphere	VEVWLAALAMALTGPVGFSTYMCLDDTVFTLSATNEMAIVRFQDGEYRLPRRSSSIATKYATEDATLYLDGDFAAFVANDRPLPGCYKMENSERG*
Ga0190271_135078681	3300018481	Soil	VKLWLTIFAVAPINPVSFSTYMCLDNTIFTLSTTNEIAIVRFQDGEYRLPRRSSDIAIKYASKEATLYVDGEFAAFAADDRPLPGCYRLESGERG
Ga0207666_10033471	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	RGVDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207673_10026065	3300025290	Corn, Switchgrass And Miscanthus Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207682_102674551	3300025893	Miscanthus Rhizosphere	VNVCLTALALALTSPVELSTYICLDNTVFTLSTSAEMAIVRFKDGQYRLPRRQSAIAIKYATSDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP
Ga0207643_111436371	3300025908	Miscanthus Rhizosphere	VNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207681_100218685	3300025923	Switchgrass Rhizosphere	VKFWLTIVAVASINPANFSTYLCLDDSIFTLSTSDEIAIVRFQDGEYRLPRRPSDVAIKYASKEATLYLDGEFAAFVAADRPLPGCYKLESGERG
Ga0207681_101335643	3300025923	Switchgrass Rhizosphere	MAWLIILAVASISQPQIATYQCLDDTVFTLSTTDEVAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSDKPPVP
Ga0207650_100483685	3300025925	Switchgrass Rhizosphere	VKVWLTALAVALTNPVEFSTYLCLDNSVFTLSTSDQMAIVRFSDGEYRLPRRRSSLAIKYATDDATLYLDGNFAAFVANDRPLPGCHRLDAGERRSP
Ga0207706_1000304815	3300025933	Corn Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYHKLESG
Ga0207651_101370381	3300025960	Switchgrass Rhizosphere	VRGVDVNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDHMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207668_100064665	3300025972	Switchgrass Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207668_101918732	3300025972	Switchgrass Rhizosphere	MAWLIILAVASISQPQIATYQCLDDTVFTLSTTDEIAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSHKPPVP
Ga0207668_103225143	3300025972	Switchgrass Rhizosphere	VKVSLTALAVALIGWTQNSTYVCLDNSVFTLSASDEMAIVRFKDGEYRLPRRKSALAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQEAAKRRAP
Ga0207640_120155952	3300025981	Corn Rhizosphere	VDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207708_102502372	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYHKLESGERRSP
Ga0207676_113222522	3300026095	Switchgrass Rhizosphere	RGVGVKVWLTALAVALTNPVEFSTYLCLDNSVFTLSTSDQMAIVRFSDGEYRLPRRRSSLAIKYATDDATLYLDGNFAAFVANDRPLPGCHRLDAGERRSP
Ga0207675_1000503885	3300026118	Switchgrass Rhizosphere	VNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0207981_10226492	3300027560	Soil	MRRGAGVNVCLTVLAVALTYPVEFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRRSALAIKYATKDATLYLDGKFAAFVANDRPLPGCHKLESGERRSP
Ga0207981_10949161	3300027560	Soil	VNVCLTALAVALINPVGFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRQSALAIKYATKEATLYLDGQFAAFVADDRPLPGCYKLESGERQSP
Ga0207428_101739844	3300027907	Populus Rhizosphere	VTFWLAIIAAASVNPADFSTYLCLDNSIFTLSTSNEIAIVRFQDGEYRLPRRPSDVAIKYASKEATLYLDGEFAAFVADDRPLPGCYKLEAGERG
Ga0268265_102465983	3300028380	Switchgrass Rhizosphere	VNFWSIMLAVVPINPVNFSTYICLDNTTFTLSTSNEVAIVRFHDGLYRLPRRSSAIAIKYASEDATLYLDGEFAAFVADDRPLPGCHKLEAGERG
Ga0268265_104412813	3300028380	Switchgrass Rhizosphere	VNLGLTALAMALANPAQFSTYLCLDDTVFTLSTSDEMAIVRFKDGEYRLPRRSSALAIKYATEDATLYLDDKFAAFVANDRPLPGCHKMEPGERKTR
Ga0247828_110849321	3300028587	Soil	VKPWLIILAVAPINPVNFSTYMCLDDTMFTLSTSNDIAIVRFQDGEYRLPRRSSDIAIKYASKEATLYIDGEFAAFAADDRPLPGCYKLEPGERG
Ga0247823_102010661	3300028590	Soil	PVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0247821_100919165	3300028596	Soil	RGVDVNACLTALVVALTNPVEFSTYICLDDTVFTLSTSDDMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0247820_100666071	3300028597	Soil	VRGVDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLESGERRSP
Ga0314812_1030772	3300031477	Soil	ERVEIALTALSVALTSSIHVSTYVCLDDTVFALSTSDQMAIVRFKDREYRLPRRQSSIAIKYATEEATLYLDGDFAAFVAEDRWPPGCQRLESGESRSP
Ga0314808_1039601	3300031492	Soil	VEIALTALSVALTSSIHVSTYVCLDDTVFALSTSDQMAIVRFKDREYRLPRRQSSIAIKYATEEATLYLDGDFAAFVAEDRWPPGCQRLESGESR
Ga0314807_1023674	3300031494	Soil	VEIALTALSVALTSSIHVSTYVCLDDTVFALSTSDQMAIVRFKDREYRLPRRQSSIAIKYATEEATLYLDGDFAAFVAEDRWPP
Ga0310888_100254541	3300031538	Soil	VEFSLTVLAAALIGSSHYSTYVCLDNSVFTLSLSDQMAIVRFRDGEYRLPRRGSAIAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQGAGERQSH
Ga0310886_100265013	3300031562	Soil	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYH
Ga0310886_105495111	3300031562	Soil	VNVCLTALALALANPVEFSTYLCLDDSVFTLSTSDQMAIVRFKDGEYRLPRRQSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESSKRRSP
Ga0310904_113400552	3300031854	Soil	VEFSLTVLAAALIGSSHYSTYVCLDNSVFTLSLSDQMAIVRFRDGEYRLPRRGSAIAIKYATDQATLYLDGEFAAFVADDRPLPG
Ga0310893_103071912	3300031892	Soil	LTVLAAALIGSSHYSTYVCLDNSVFTLSLSDQMAIVRFRDGEYRLPRRGSAIAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQGAGERQSR
Ga0310893_105607841	3300031892	Soil	VEFSTYLCLDDSVFTLSTSDQMAIVRFKDGEYRLPRRQSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGKRRSP
Ga0310900_106291602	3300031908	Soil	MAWLIILAVASISQPQIATYQCLDDTVFTLSTTDEIAIVRFRDGEYRLPRRRSSIAIKYATEEATLYLDGDFAAFASNERPLPGCYKLGSDKPPVP
Ga0310900_110325381	3300031908	Soil	MDRGESVKIWLTALLLANPVETTTYVCLDDTVFTISASGTIAIVRFKDGEYRLPRRSSSLATKYASEEATLYLDGDFAAFVTDERALPGCYKKGIHVRRPQ
Ga0310891_100147692	3300031913	Soil	VDVNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGYHKLESGERRSP
Ga0310884_104266861	3300031944	Soil	LTALAVALTNPVEFSTYLCLDDTVFTLSTSKEMAIVRFKDGEYRLPRRQSALAIKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGERRSP
Ga0310897_103321202	3300032003	Soil	RKEERVEFSLTVLAAALIGSSHYSTYVCLDNSVFTLSLSDQMAIVRFRDGEYRLPRRGSAIAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQGAGERQSH
Ga0310906_113133131	3300032013	Soil	MHRGVSVNVCLTALALALANPVEFSTYLCLDDSVFTLSTSDQMAIVRFKDGEYRLPRRQSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGKRRSP
Ga0310890_100792712	3300032075	Soil	MHRGVSVNVCLTALALALANPVEFSTYLCLDESVFTLSISDQMAIVRFKDGEYRLPRRQSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGKRRSP
Ga0310889_100339794	3300032179	Soil	VEFSLTVLAAALIGSSYSTYVCLDNSMFTLSLSDQMAIVRFRDGEYRLPRRGSAIAIKYATDQATLYLDGEFAAFVADDRPLPGCHKQGAGERQSH
Ga0310889_106904461	3300032179	Soil	VNVCLTALALALANPVEFSTYLCLDESVFTLSTSDQMAIVRFKDGEYRLPRRQSALATKYATEDATLYLDGEFAAFVANDRPLPGCHKLESGKRRSP
Ga0310812_100218291	3300032421	Soil	MRRGVGVKVWLTALAVALTNPVEFSTYLCLDNSVFTLSTSDQMAIVRFSDGEYRLPRRRSSLAIKYATDDATLYLDGNFAAFVANDRPLPGCHRLDAGERRSP
Ga0310812_104673912	3300032421	Soil	VNVCLTALVVALTNPVEFSTYICLDDTVFTLSTSDVMAIVRFKDGEYRLPRRRSALAIKYATEDATLYLDGQFAAFAANDRPLPGCHKLE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089547

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences