Metagenome / Metatranscriptome Family F089474

Basic Information
Family ID	F089474
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNP
Number of Associated Samples	96
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.50 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	96
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.42

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (99.083 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (39.450 % of family members)
Environment Ontology (ENVO)	Unclassified (45.872 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (67.890 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 1A21PFW6_10369791 2A2065W1_110105511 3Ga0063454_1019601881 4Ga0062591_1002297761 5Ga0070705_1010571841 6Ga0070681_110055541 7Ga0070672_1011391352 8Ga0066701_107408562 9Ga0066699_111877521 10Ga0081455_106573782 11Ga0070715_101275462 12Ga0097621_1018289132 13Ga0066659_118704741 14Ga0066660_114056032 15Ga0075434_1020768181 16Ga0066709_1000070331 17Ga0105249_113523612 18Ga0127461_10752451 19Ga0127496_10047441 20Ga0127492_10798832 21Ga0127468_11011042 22Ga0127490_10123481 23Ga0127475_10246431 24Ga0127450_10652451 25Ga0127446_11051682 26Ga0127458_11081232 27Ga0127449_11420212 28Ga0127452_11075552 29Ga0127488_11649102 30Ga0127486_10131522 31Ga0127456_12209432 32Ga0127483_11442982 33Ga0126321_12451842 34Ga0126376_105426871 35Ga0151489_12747282 36Ga0120114_10476342 37Ga0137388_106831671 38Ga0137364_113182382 39Ga0137377_100047601 40Ga0134028_10356751 41Ga0134028_11791341 42Ga0137368_102458152 43Ga0137385_114221911 44Ga0134039_10348912 45Ga0134058_11475491 46Ga0134033_12384432 47Ga0134023_10382161 48Ga0134023_11207802 49Ga0134046_12481342 50Ga0134040_11076681 51Ga0134054_12323251 52Ga0134035_11125091 53Ga0134052_11872862 54Ga0134044_10016841 55Ga0134044_10690571 56Ga0134044_10768382 57Ga0134051_13562492 58Ga0134061_10689222 59Ga0134061_13471422 60Ga0134048_12801582 61Ga0134059_12032221 62Ga0134059_12241942 63Ga0134059_13703482 64Ga0134049_10709681 65Ga0134050_10173382 66Ga0134050_10623471 67Ga0134060_13584282 68Ga0150984_1041081641 69Ga0150984_1085770991 70Ga0157293_100949432 71Ga0137396_107786711 72Ga0137404_107969142 73Ga0134077_104582872 74Ga0164308_104796271 75Ga0134085_104532682 76Ga0132258_106675604 77Ga0184643_11294212 78Ga0184644_10241592 79Ga0184642_10972321 80Ga0184642_17247382 81Ga0193701_10129451 82Ga0193692_11166121 83Ga0193731_11178392 84Ga0210382_103562402 85Ga0207654_110080581 86Ga0207663_109261182 87Ga0207676_104294803 88Ga0209689_13460952 89Ga0307293_102826141 90Ga0307303_101853501 91Ga0307307_103070061 92Ga0307290_103458791 93Ga0307299_102743032 94Ga0307287_101920571 95Ga0307503_106096292 96Ga0307305_102752051 97Ga0307305_104104172 98Ga0307292_100750331 99Ga0307292_102040061 100Ga0307302_101201721 101Ga0307302_106238972 102Ga0307277_102492602 103Ga0307308_104348972 104Ga0102757_112803842 105Ga0308206_10249422 106Ga0308190_10228921 107Ga0308189_104145732 108Ga0308199_11293811 109Ga0307506_102762652
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56 1A21PFW6_10369791 2A2065W1_110105511 3Ga0063454_1019601881 4Ga0070705_1010571841 5Ga0066701_107408562 6Ga0081455_106573782 7Ga0066660_114056032 8Ga0105249_113523612 9Ga0127458_11081232 10Ga0127488_11649102 11Ga0126376_105426871 12Ga0134028_11791341 13Ga0134046_12481342 14Ga0134061_10689222 15Ga0150984_1041081641 16Ga0132258_106675604 17Ga0207676_104294803
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0102757_112803842 2A2065W1_110105511 3Ga0070681_110055541 4Ga0081455_106573782 5Ga0097621_1018289132 6Ga0066659_118704741 7Ga0066660_114056032 8Ga0075434_1020768181 9Ga0066709_1000070331 10Ga0127458_11081232 11Ga0127488_11649102 12Ga0127486_10131522 13Ga0127456_12209432 14Ga0126321_12451842 15Ga0126376_105426871 16Ga0151489_12747282 17Ga0120114_10476342 18Ga0137364_113182382 19Ga0137368_102458152 20Ga0134023_10382161 21Ga0134046_12481342 22Ga0134052_11872862 23Ga0134061_10689222 24Ga0134059_12032221 25Ga0150984_1041081641 26Ga0137396_107786711 27Ga0132258_106675604 28Ga0307287_101920571
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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 55.56% β-sheet: 0.00% Coil/Unstructured: 44.44%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.42
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.42
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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF16363	GDP_Man_Dehyd	87.16
PF01370	Epimerase	10.09
PF02655	ATP-grasp_3	0.92
PF09913	DUF2142	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.08 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	5.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	5.50 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5.50 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	5.50 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.83 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	5.50 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	5.50 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5.50 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples	5.50 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	1.83 %
Unclassified	root	N/A	0.92 %

Name	Rank	Taxonomy	Distribution
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples	1.83 %
Unclassified	root	N/A	0.92 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	5.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	0.92 %
uncultured Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	5.50 %
uncultured Nocardioides sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → environmental samples → uncultured Nocardioides sp.	1.83 %

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001333\|A21PFW6_1036979	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300001537\|A2065W1_11010551	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300004081\|Ga0063454_101960188	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300004643\|Ga0062591_100229776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1394	Open in IMG/M
3300005440\|Ga0070705_101057184	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005458\|Ga0070681_11005554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	754	Open in IMG/M
3300005543\|Ga0070672_101139135	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005552\|Ga0066701_10740856	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → environmental samples → uncultured Gemmatimonadaceae bacterium	588	Open in IMG/M
3300005561\|Ga0066699_11187752	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300005937\|Ga0081455_10657378	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M

Showing 1 to 10 of 109 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.83%
Host-Associated	Host-Associated	9.17%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	5.50%
Plants	Host-Associated → Plants	9.17%
Terrestrial	Environmental → Terrestrial	85.32%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	5.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.50%
Roots	Host-Associated → Plants → Roots	0.92%
Soil	Environmental → Terrestrial → Soil	85.32%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Loam	Environmental → Terrestrial → Soil → Loam	4.59%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.75%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	70.64%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	39.45%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.59%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	22.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.42%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001333	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A21-PF)- 6 month illumina	Environmental	Open in IMG/M
3300001537	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A20-65 cm-11A)- 1 week illumina	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M

Showing 1 to 10 of 96 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
A21PFW6_10369791	3300001333	Permafrost	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDSMTLHGN
A2065W1_110105511	3300001537	Permafrost	LPRRIGVAAAIVFVAAVLCVPAAEAKAHMLIGIQDDAMTLRGNPTFTFPTLKQLR
Ga0063454_1019601881	3300004081	Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQDDAMTLFGN
Ga0062591_1002297761	3300004643	Soil	LFRRIGVAAAIILVAAGLAVPAAQAKAHMLVGLQDDAMTLRGNPTFTFSTLK
Ga0070705_1010571841	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LPRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPTFTFST
Ga0070681_110055541	3300005458	Corn Rhizosphere	LRRRMGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNPQFTFSTLKS
Ga0070672_1011391352	3300005543	Miscanthus Rhizosphere	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPS
Ga0066701_107408562	3300005552	Soil	LHRRFGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAM
Ga0066699_111877521	3300005561	Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPIFTF
Ga0081455_106573782	3300005937	Tabebuia Heterophylla Rhizosphere	LRRRIGVIVATALVAVGLCVPTAQAQRRLLVGMQDDAMVLRGDPTFTFR
Ga0070715_101275462	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFTFST
Ga0097621_1018289132	3300006237	Miscanthus Rhizosphere	LHRRLGVLAAIVFLAAALSVPAAQAKRHMLIGLQDDAMTLFGNPTFTFR
Ga0066659_118704741	3300006797	Soil	LPRRLGVLAAIVFAAAGLCVPAASAKAHMLVGIQDDALT
Ga0066660_114056032	3300006800	Soil	VALLVAAGLSAPAATASRHMLVGIQDEANTLYGNPDQ
Ga0075434_1020768181	3300006871	Populus Rhizosphere	LHRRIGVVAATVLVAAGLCVPAATAARHLLVGIQDDAMVLRGNPTFTFGMLKQLR
Ga0066709_1000070331	3300009137	Grasslands Soil	LHRRFGVFAAIVLVSAGLSVPAAQAQRHLLVGIQDDAM
Ga0105249_113523612	3300009553	Switchgrass Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFTFSTLKSL
Ga0127461_10752451	3300010084	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFT
Ga0127496_10047441	3300010086	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGN
Ga0127492_10798832	3300010087	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTVTFQ
Ga0127468_11011042	3300010092	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFT
Ga0127490_10123481	3300010093	Grasslands Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQDD
Ga0127475_10246431	3300010095	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNP
Ga0127450_10652451	3300010099	Grasslands Soil	LAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPQFTFST
Ga0127446_11051682	3300010104	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDP
Ga0127458_11081232	3300010112	Grasslands Soil	LRRSLGVLAAIILFAAGLSVPAAQAKQHMLVGLQDDAMVLY
Ga0127449_11420212	3300010117	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQDDAMTLHGNPT
Ga0127452_11075552	3300010119	Grasslands Soil	LFRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTVTF
Ga0127488_11649102	3300010122	Grasslands Soil	LAAIVLVAAGFAVPAAQAQRHLLVGIQDDAMVLRGNPQ
Ga0127486_10131522	3300010128	Grasslands Soil	LPRRLGVFAAIVLVVAGLSVPAAQAKRHLLVGIQDDSMTLRGNP
Ga0127456_12209432	3300010140	Grasslands Soil	LPRRIGVAAAIVFVAAVLYVPVAQAKAHMLVGIQDDAMTLHGNPTFTFPTLK
Ga0127483_11442982	3300010142	Grasslands Soil	LHKRVGVFAAIVFLAAALSVPAAQAKRHMLIGLQD
Ga0126321_12451842	3300010145	Soil	LPKRLGVLAAIVLLAAGLSVPAAQAKRGMLIGIQDDAMVLFGN
Ga0126376_105426871	3300010359	Tropical Forest Soil	LPKNIGVFAATVFLAAALAVPAAQAKNHMLVGMQDD
Ga0151489_12747282	3300011106	Soil	LRRRIGVAAAIVLVAASLAEPAAQAKQHMLVGIQDDAMTL
Ga0120114_10476342	3300011998	Permafrost	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDSMTLHGNPTFTFPTL
Ga0137388_106831671	3300012189	Vadose Zone Soil	LPRRIGVAAAIVFVAAVLCVPAAEAKAHMLIGIQDDAMTLRGDPTFTFPTLKQLRT
Ga0137364_113182382	3300012198	Vadose Zone Soil	VVAAAIVLIAAGLAVPAAQAKAHMLVGIQDDSMTLHGNPTFTFTTLK
Ga0137377_100047601	3300012211	Vadose Zone Soil	LAAIVLVAAGLCVPAASAKAHMLVGIQDDALTLHGNPTFTFPTLKQ
Ga0134028_10356751	3300012224	Grasslands Soil	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTF
Ga0134028_11791341	3300012224	Grasslands Soil	LPRRIGVAAAIAFAAAGLCVPVASAKAHMLVGIQD
Ga0137368_102458152	3300012358	Vadose Zone Soil	LPRRIGVFAAIVLVAAGLCVPAAQAQRHLLVGMQDDSMA
Ga0137385_114221911	3300012359	Vadose Zone Soil	LPRRIGVAAAIVFVAAGLCVPVASAKAHMLVGIQDDAMTLRGNPTFTFPTLKQL
Ga0134039_10348912	3300012374	Grasslands Soil	LRRRVGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILK
Ga0134058_11475491	3300012379	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDA
Ga0134033_12384432	3300012383	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNP
Ga0134023_10382161	3300012385	Grasslands Soil	LHRRFGVFAAIVFVAAALSVPAAQAKNHMLIGMQDDA
Ga0134023_11207802	3300012385	Grasslands Soil	LAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMVLRGNPQFTFSTLKQLR
Ga0134046_12481342	3300012386	Grasslands Soil	LLRRTAFIAALVLVAAGLAIPAAQAKQHMLVGIQDDAMTLRGNPTV
Ga0134040_11076681	3300012389	Grasslands Soil	VVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGNPTFTFSTLK
Ga0134054_12323251	3300012390	Grasslands Soil	LFRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTL
Ga0134035_11125091	3300012391	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGNPTFTFSTLKQLR
Ga0134052_11872862	3300012393	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPQFT
Ga0134044_10016841	3300012395	Grasslands Soil	LRRSLGVLAAIILLAAGLSVPAAQAKQHMLVGLQDDAMVL
Ga0134044_10690571	3300012395	Grasslands Soil	LRKRIGVFAAIALLAAALSVPAAQAKRHMLIGLQDDAMVL
Ga0134044_10768382	3300012395	Grasslands Soil	LRRRIGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNPTFTFSTLKQ
Ga0134051_13562492	3300012398	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILKQLR
Ga0134061_10689222	3300012399	Grasslands Soil	LRRRIGVFAAIFFLAAGLSVPAAQAKRHMLIGIQDD
Ga0134061_13471422	3300012399	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQD
Ga0134048_12801582	3300012400	Grasslands Soil	LHRRFGVFAAIVFVAAALSVPAAQAKNHMLIGMQDD
Ga0134059_12032221	3300012402	Grasslands Soil	LHRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDATVLHGNPTFTF
Ga0134059_12241942	3300012402	Grasslands Soil	LRRQLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDD
Ga0134059_13703482	3300012402	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLIGIQDDAMTLRGNP
Ga0134049_10709681	3300012403	Grasslands Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLIGIQDDAM
Ga0134050_10173382	3300012407	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLRGDPTFTFPILKQL
Ga0134050_10623471	3300012407	Grasslands Soil	LPRRIGVAAAIVFVAAVLCVPVAQAKAHMLVGIQDDAMTLH
Ga0134060_13584282	3300012410	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGVQDDAMTLRGNSQFTFS
Ga0150984_1041081641	3300012469	Avena Fatua Rhizosphere	LLRRAGILTAIALVVVGLAVPAAQAKRHMLVGIQDD
Ga0150984_1085770991	3300012469	Avena Fatua Rhizosphere	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAM
Ga0157293_100949432	3300012898	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTL
Ga0137396_107786711	3300012918	Vadose Zone Soil	LPSRIGVAAAIVFVAASLCVPVASAKAHMLVGIQDDAMTLQGNPT
Ga0137404_107969142	3300012929	Vadose Zone Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGN
Ga0134077_104582872	3300012972	Grasslands Soil	LRRRLGVFAAIVLVAAGLAVPAAQAQRHLLVGIQDDAMTLR
Ga0164308_104796271	3300012985	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQ
Ga0134085_104532682	3300015359	Grasslands Soil	LAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPAFTFGTLK
Ga0132258_106675604	3300015371	Arabidopsis Rhizosphere	LPKRIGVILATALAAVGLCVPAAQAQRHLLVGLQDD
Ga0184643_11294212	3300019255	Groundwater Sediment	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQD
Ga0184644_10241592	3300019269	Groundwater Sediment	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNP
Ga0184642_10972321	3300019279	Groundwater Sediment	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLH
Ga0184642_17247382	3300019279	Groundwater Sediment	LRRRIGVAAAIVLVAAGLAVPAAQAKPHMLVGIQDDAMTLRGNPTFTFGTLK
Ga0193701_10129451	3300019875	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGTPTFTFQ
Ga0193692_11166121	3300020000	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHG
Ga0193731_11178392	3300020001	Soil	LPRRIGVAAAIVFVAASLCVPAASAKAHMLVGIQD
Ga0210382_103562402	3300021080	Groundwater Sediment	LLRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGN
Ga0207654_110080581	3300025911	Corn Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNP
Ga0207663_109261182	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNPQFTFST
Ga0207676_104294803	3300026095	Switchgrass Rhizosphere	MGVAAAIVLVAEGLAVPAAQAKQHMLVGIQDDAMTLHG
Ga0209689_13460952	3300027748	Soil	LPRRIGVAAAIVFVAAGLCVPVASAKAHMLVGIQDDAMTLHGNPTFTFPTLKQL
Ga0307293_102826141	3300028711	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTFSTLK
Ga0307303_101853501	3300028713	Soil	LLRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDSMTLRGNPTFTFSTLK
Ga0307307_103070061	3300028718	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTLT
Ga0307290_103458791	3300028791	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDD
Ga0307299_102743032	3300028793	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFTFQTLK
Ga0307287_101920571	3300028796	Soil	LRKRIGVFAAIALLAAALSVPAAQAKRHMLIGLQDDAMVLF
Ga0307503_106096292	3300028802	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPSFTFP
Ga0307305_102752051	3300028807	Soil	LFRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPTFTF
Ga0307305_104104172	3300028807	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAM
Ga0307292_100750331	3300028811	Soil	LFRRIGVAAAIVFVAAGLSVPAAQAKAHMLVGIQDDAMTL
Ga0307292_102040061	3300028811	Soil	LPRRIGVAAAIVLVAAGLAVPAASAKAHMLIGIQDDAMT
Ga0307302_101201721	3300028814	Soil	LPRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGLQDDAMTLRGNPTSTF
Ga0307302_106238972	3300028814	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNTTFTFQT
Ga0307277_102492602	3300028881	Soil	LPRRIGVAAAIVLVAAGLAVPAASAKAHMLVGIQDDA
Ga0307308_104348972	3300028884	Soil	LRRRIGVAAAIVFVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNPT
Ga0102757_112803842	3300030785	Soil	LHRRIGVAAAIVLVAAGLAVPAAQAKAHMLVGIQDDAMTLRGNP
Ga0308206_10249422	3300030903	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMTLHGNPQFT
Ga0308190_10228921	3300030993	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMALHGNP
Ga0308189_104145732	3300031058	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRG
Ga0308199_11293811	3300031094	Soil	LPRRIGVAAAIVFVAAGLCVPAASAKAHMLVGIQDDAMTLRGNPTFTF
Ga0307506_102762652	3300031366	Soil	LRRRIGVAAAIVLVAAGLAVPAAQAKQHMLVGIQDDAMT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089474

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences